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Items: 12

1.

AutoTube: a novel software for the automated morphometric analysis of vascular networks in tissues.

Montoya-Zegarra JA, Russo E, Runge P, Jadhav M, Willrodt AH, Stoma S, Nørrelykke SF, Detmar M, Halin C.

Angiogenesis. 2019 May;22(2):223-236. doi: 10.1007/s10456-018-9652-3. Epub 2018 Oct 28.

2.

Quantitative spatial analysis of haematopoiesis-regulating stromal cells in the bone marrow microenvironment by 3D microscopy.

Gomariz A, Helbling PM, Isringhausen S, Suessbier U, Becker A, Boss A, Nagasawa T, Paul G, Goksel O, Székely G, Stoma S, Nørrelykke SF, Manz MG, Nombela-Arrieta C.

Nat Commun. 2018 Jun 28;9(1):2532. doi: 10.1038/s41467-018-04770-z.

3.

VEGF-A Regulates Cellular Localization of SR-BI as Well as Transendothelial Transport of HDL but Not LDL.

Velagapudi S, Yalcinkaya M, Piemontese A, Meier R, Nørrelykke SF, Perisa D, Rzepiela A, Stebler M, Stoma S, Zanoni P, Rohrer L, von Eckardstein A.

Arterioscler Thromb Vasc Biol. 2017 May;37(5):794-803. doi: 10.1161/ATVBAHA.117.309284. Epub 2017 Mar 30.

4.

Long-term tracking of budding yeast cells in brightfield microscopy: CellStar and the Evaluation Platform.

Versari C, Stoma S, Batmanov K, Llamosi A, Mroz F, Kaczmarek A, Deyell M, Lhoussaine C, Hersen P, Batt G.

J R Soc Interface. 2017 Feb;14(127). pii: 20160705. doi: 10.1098/rsif.2016.0705.

5.

Hypoxia Induces a HIF-1-Dependent Transition from Collective-to-Amoeboid Dissemination in Epithelial Cancer Cells.

Lehmann S, Te Boekhorst V, Odenthal J, Bianchi R, van Helvert S, Ikenberg K, Ilina O, Stoma S, Xandry J, Jiang L, Grenman R, Rudin M, Friedl P.

Curr Biol. 2017 Feb 6;27(3):392-400. doi: 10.1016/j.cub.2016.11.057. Epub 2017 Jan 12.

6.

CNV analysis in the Lithuanian population.

Urnikyte A, Domarkiene I, Stoma S, Ambrozaityte L, Uktveryte I, Meskiene R, Kasiulevičius V, Burokiene N, Kučinskas V.

BMC Genet. 2016 May 4;17(1):64. doi: 10.1186/s12863-016-0373-6.

7.

In Vivo Fluorescence Imaging of the Activity of CEA TCB, a Novel T-Cell Bispecific Antibody, Reveals Highly Specific Tumor Targeting and Fast Induction of T-Cell-Mediated Tumor Killing.

Lehmann S, Perera R, Grimm HP, Sam J, Colombetti S, Fauti T, Fahrni L, Schaller T, Freimoser-Grundschober A, Zielonka J, Stoma S, Rudin M, Klein C, Umana P, Gerdes C, Bacac M.

Clin Cancer Res. 2016 Sep 1;22(17):4417-27. doi: 10.1158/1078-0432.CCR-15-2622. Epub 2016 Apr 26.

8.

Modeling dynamics of cell-to-cell variability in TRAIL-induced apoptosis explains fractional killing and predicts reversible resistance.

Bertaux F, Stoma S, Drasdo D, Batt G.

PLoS Comput Biol. 2014 Oct 23;10(10):e1003893. doi: 10.1371/journal.pcbi.1003893. eCollection 2014 Oct.

9.

Bridging the gaps in systems biology.

Cvijovic M, Almquist J, Hagmar J, Hohmann S, Kaltenbach HM, Klipp E, Krantz M, Mendes P, Nelander S, Nielsen J, Pagnani A, Przulj N, Raue A, Stelling J, Stoma S, Tobin F, Wodke JA, Zecchina R, Jirstrand M.

Mol Genet Genomics. 2014 Oct;289(5):727-34. doi: 10.1007/s00438-014-0843-3. Epub 2014 Apr 13. Review.

PMID:
24728588
10.

STL-based analysis of TRAIL-induced apoptosis challenges the notion of type I/type II cell line classification.

Stoma S, Donzé A, Bertaux F, Maler O, Batt G.

PLoS Comput Biol. 2013;9(5):e1003056. doi: 10.1371/journal.pcbi.1003056. Epub 2013 May 9.

11.

STSE: Spatio-Temporal Simulation Environment Dedicated to Biology.

Stoma S, Fröhlich M, Gerber S, Klipp E.

BMC Bioinformatics. 2011 Apr 28;12:126. doi: 10.1186/1471-2105-12-126.

12.

Flux-based transport enhancement as a plausible unifying mechanism for auxin transport in meristem development.

Stoma S, Lucas M, Chopard J, Schaedel M, Traas J, Godin C.

PLoS Comput Biol. 2008 Oct;4(10):e1000207. doi: 10.1371/journal.pcbi.1000207. Epub 2008 Oct 31.

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