Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 18

1.

Summary of the DREAM8 Parameter Estimation Challenge: Toward Parameter Identification for Whole-Cell Models.

Karr JR, Williams AH, Zucker JD, Raue A, Steiert B, Timmer J, Kreutz C; DREAM8 Parameter Estimation Challenge Consortium, Wilkinson S, Allgood BA, Bot BM, Hoff BR, Kellen MR, Covert MW, Stolovitzky GA, Meyer P.

PLoS Comput Biol. 2015 May 28;11(5):e1004096. doi: 10.1371/journal.pcbi.1004096. eCollection 2015 May.

2.

Improving breast cancer survival analysis through competition-based multidimensional modeling.

Bilal E, Dutkowski J, Guinney J, Jang IS, Logsdon BA, Pandey G, Sauerwine BA, Shimoni Y, Moen Vollan HK, Mecham BH, Rueda OM, Tost J, Curtis C, Alvarez MJ, Kristensen VN, Aparicio S, Børresen-Dale AL, Caldas C, Califano A, Friend SH, Ideker T, Schadt EE, Stolovitzky GA, Margolin AA.

PLoS Comput Biol. 2013;9(5):e1003047. doi: 10.1371/journal.pcbi.1003047. Epub 2013 May 9.

3.

Quantitative modeling of the terminal differentiation of B cells and mechanisms of lymphomagenesis.

Martínez MR, Corradin A, Klein U, Álvarez MJ, Toffolo GM, di Camillo B, Califano A, Stolovitzky GA.

Proc Natl Acad Sci U S A. 2012 Feb 14;109(7):2672-7. doi: 10.1073/pnas.1113019109. Epub 2012 Jan 30.

4.

Electrochemical protection of thin film electrodes in solid state nanopores.

Harrer S, Waggoner PS, Luan B, Afzali-Ardakani A, Goldfarb DL, Peng H, Martyna G, Rossnagel SM, Stolovitzky GA.

Nanotechnology. 2011 Jul 8;22(27):275304. doi: 10.1088/0957-4484/22/27/275304. Epub 2011 May 20.

5.

Electrochemical characterization of thin film electrodes toward developing a DNA transistor.

Harrer S, Ahmed S, Afzali-Ardakani A, Luan B, Waggoner PS, Shao X, Peng H, Goldfarb DL, Martyna GJ, Rossnagel SM, Deligianni L, Stolovitzky GA.

Langmuir. 2010 Dec 21;26(24):19191-8. doi: 10.1021/la102671g. Epub 2010 Nov 22.

PMID:
21090688
6.

Transcription factor expression in lipopolysaccharide-activated peripheral-blood-derived mononuclear cells.

Roach JC, Smith KD, Strobe KL, Nissen SM, Haudenschild CD, Zhou D, Vasicek TJ, Held GA, Stolovitzky GA, Hood LE, Aderem A.

Proc Natl Acad Sci U S A. 2007 Oct 9;104(41):16245-50. Epub 2007 Oct 3.

7.

p53-Mdm2 loop controlled by a balance of its feedback strength and effective dampening using ATM and delayed feedback.

Wagner J, Ma L, Rice JJ, Hu W, Levine AJ, Stolovitzky GA.

Syst Biol (Stevenage). 2005 Sep;152(3):109-18.

PMID:
16986275
8.

A plausible model for the digital response of p53 to DNA damage.

Ma L, Wagner J, Rice JJ, Hu W, Levine AJ, Stolovitzky GA.

Proc Natl Acad Sci U S A. 2005 Oct 4;102(40):14266-71. Epub 2005 Sep 26.

9.

Formation of regulatory patterns during signal propagation in a Mammalian cellular network.

Ma'ayan A, Jenkins SL, Neves S, Hasseldine A, Grace E, Dubin-Thaler B, Eungdamrong NJ, Weng G, Ram PT, Rice JJ, Kershenbaum A, Stolovitzky GA, Blitzer RD, Iyengar R.

Science. 2005 Aug 12;309(5737):1078-83.

10.

Report: workshop on mediastinal grey zone lymphoma.

Poppema S, Kluiver JL, Atayar C, van den Berg A, Rosenwald A, Hummel M, Lenze D, Lammert H, Stein H, Joos S, Barth T, Dyer M, Lichter P, Klein U, Cattoretti G, Gloghini A, Tu Y, Stolovitzky GA, Califano A, Carbone A, Dalla-Favera R, Melzner I, Bucur AJ, Brüderlein S, Dorsch K, Hasel C, Barth TF, Leithäuser F, Möller P.

Eur J Haematol Suppl. 2005 Jul;(66):45-52.

PMID:
16007868
11.

Statistical analysis of MPSS measurements: application to the study of LPS-activated macrophage gene expression.

Stolovitzky GA, Kundaje A, Held GA, Duggar KH, Haudenschild CD, Zhou D, Vasicek TJ, Smith KD, Aderem A, Roach JC.

Proc Natl Acad Sci U S A. 2005 Feb 1;102(5):1402-7. Epub 2005 Jan 24.

12.

Tracking CD40 signaling during germinal center development.

Basso K, Klein U, Niu H, Stolovitzky GA, Tu Y, Califano A, Cattoretti G, Dalla-Favera R.

Blood. 2004 Dec 15;104(13):4088-96. Epub 2004 Aug 26.

PMID:
15331443
13.

Gene expression dynamics during germinal center transit in B cells.

Klein U, Tu Y, Stolovitzky GA, Keller JL, Haddad J Jr, Miljkovic V, Cattoretti G, Califano A, Dalla-Favera R.

Ann N Y Acad Sci. 2003 Apr;987:166-72. Review.

PMID:
12727636
14.

Motif-based construction of a functional map for mammalian olfactory receptors.

Liu AH, Zhang X, Stolovitzky GA, Califano A, Firestein SJ.

Genomics. 2003 May;81(5):443-56.

PMID:
12706103
15.

Identification of a global gene expression signature of B-chronic lymphocytic leukemia.

Jelinek DF, Tschumper RC, Stolovitzky GA, Iturria SJ, Tu Y, Lepre J, Shah N, Kay NE.

Mol Cancer Res. 2003 Mar;1(5):346-61.

16.

Transcriptional analysis of the B cell germinal center reaction.

Klein U, Tu Y, Stolovitzky GA, Keller JL, Haddad J Jr, Miljkovic V, Cattoretti G, Califano A, Dalla-Favera R.

Proc Natl Acad Sci U S A. 2003 Mar 4;100(5):2639-44. Epub 2003 Feb 25.

17.

Identification of Hodgkin and Reed-Sternberg cell-specific genes by gene expression profiling.

Küppers R, Klein U, Schwering I, Distler V, Bräuninger A, Cattoretti G, Tu Y, Stolovitzky GA, Califano A, Hansmann ML, Dalla-Favera R.

J Clin Invest. 2003 Feb;111(4):529-37.

18.

Gene expression profiling of B cell chronic lymphocytic leukemia reveals a homogeneous phenotype related to memory B cells.

Klein U, Tu Y, Stolovitzky GA, Mattioli M, Cattoretti G, Husson H, Freedman A, Inghirami G, Cro L, Baldini L, Neri A, Califano A, Dalla-Favera R.

J Exp Med. 2001 Dec 3;194(11):1625-38.

Supplemental Content

Loading ...
Support Center