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Establishment and multi drug resistance evolution of ST235 Pseudomonas aeruginosa strains in the intensive care unit of a Colombian hospital.

Martinez E, Pérez JE, Buelvas F, Tovar C, Vanegas N, Stokes HW.

Res Microbiol. 2014 Dec;165(10):852-6. doi: 10.1016/j.resmic.2014.10.011. Epub 2014 Nov 1.


The purifying trend in the chromosomal integron in Vibrio cholerae strains during the seventh pandemic.

Zhang C, Pang B, Zhou Z, Wang H, Zhou H, Lu X, Du P, Zhang L, Li J, Cui Z, Chen C, Stokes HW, Kan B.

Infect Genet Evol. 2014 Aug;26:241-9. doi: 10.1016/j.meegid.2014.05.019. Epub 2014 Jun 3.


A genomic island integrated into recA of Vibrio cholerae contains a divergent recA and provides multi-pathway protection from DNA damage.

Rapa RA, Islam A, Monahan LG, Mutreja A, Thomson N, Charles IG, Stokes HW, Labbate M.

Environ Microbiol. 2015 Apr;17(4):1090-102. doi: 10.1111/1462-2920.12512. Epub 2014 Jun 26.


Novel integrons and gene cassettes from a Cascadian submarine gas-hydrate-bearing core.

Elsaied H, Stokes HW, Yoshioka H, Mitani Y, Maruyama A.

FEMS Microbiol Ecol. 2014 Feb;87(2):343-56. doi: 10.1111/1574-6941.12227. Epub 2013 Oct 23.


Emerging and existing mechanisms co-operate in generating diverse β-lactam resistance phenotypes in geographically dispersed and genetically disparate Pseudomonas aeruginosa strains.

Martinez E, Pérez JE, Márquez C, Vilacoba E, Centrón D, Leal AL, Saavedra C, Saavedra SY, Tovar C, Vanegas N, Stokes HW.

J Glob Antimicrob Resist. 2013 Sep;1(3):135-142. doi: 10.1016/j.jgar.2013.03.013. Epub 2013 May 14.


Mobile elements, zoonotic pathogens and commensal bacteria: conduits for the delivery of resistance genes into humans, production animals and soil microbiota.

Djordjevic SP, Stokes HW, Roy Chowdhury P.

Front Microbiol. 2013 Apr 30;4:86. doi: 10.3389/fmicb.2013.00086. eCollection 2013.


Deletion of integron-associated gene cassettes impact on the surface properties of Vibrio rotiferianus DAT722.

Rapa RA, Shimmon R, Djordjevic SP, Stokes HW, Labbate M.

PLoS One. 2013;8(3):e58430. doi: 10.1371/journal.pone.0058430. Epub 2013 Mar 6.


Indigenous Vibrio cholerae strains from a non-endemic region are pathogenic.

Islam A, Labbate M, Djordjevic SP, Alam M, Darling A, Melvold J, Holmes AJ, Johura FT, Cravioto A, Charles IG, Stokes HW.

Open Biol. 2013 Feb 13;3(2):120181. doi: 10.1098/rsob.120181.


Integron gene cassettes: a repository of novel protein folds with distinct interaction sites.

Sureshan V, Deshpande CN, Boucher Y, Koenig JE; Midwest Center for Structural Genomics, Stokes HW, Harrop SJ, Curmi PM, Mabbutt BC.

PLoS One. 2013;8(1):e52934. doi: 10.1371/journal.pone.0052934. Epub 2013 Jan 18.


Plasmids and bacterial strains mediating multidrug-resistant hospital-acquired infections are coresidents of the hospital environment.

Betteridge T, Merlino J, Natoli J, Cheong EY, Gottlieb T, Stokes HW.

Microb Drug Resist. 2013 Apr;19(2):104-9. doi: 10.1089/mdr.2012.0104. Epub 2012 Oct 15.


Integron associated mobile genes: Just a collection of plug in apps or essential components of cell network hardware?

Labbate M, Boucher Y, Luu I, Chowdhury PR, Stokes HW.

Mob Genet Elements. 2012 Jan 1;2(1):13-18.


Are humans increasing bacterial evolvability?

Gillings MR, Stokes HW.

Trends Ecol Evol. 2012 Jun;27(6):346-52. doi: 10.1016/j.tree.2012.02.006. Epub 2012 Mar 27. Review.


Class 1 integron-associated spread of resistance regions in Pseudomonas aeruginosa: plasmid or chromosomal platforms?

Stokes HW, Martinez E, Roy Chowdhury P, Djordjevic S.

J Antimicrob Chemother. 2012 Jul;67(7):1799-800. doi: 10.1093/jac/dks116. Epub 2012 Mar 28. No abstract available.


Diverse mobilized class 1 integrons are common in the chromosomes of pathogenic Pseudomonas aeruginosa clinical isolates.

Martinez E, Marquez C, Ingold A, Merlino J, Djordjevic SP, Stokes HW, Chowdhury PR.

Antimicrob Agents Chemother. 2012 Apr;56(4):2169-72. doi: 10.1128/AAC.06048-11. Epub 2012 Jan 23.


Integration of a laterally acquired gene into a cell network important for growth in a strain of Vibrio rotiferianus.

Labbate M, Boucher Y, Chowdhury PR, Stokes HW.

BMC Microbiol. 2011 Nov 18;11:253. doi: 10.1186/1471-2180-11-253.


Genetic context and structural diversity of class 1 integrons from human commensal bacteria in a hospital intensive care unit.

Betteridge T, Partridge SR, Iredell JR, Stokes HW.

Antimicrob Agents Chemother. 2011 Aug;55(8):3939-43. doi: 10.1128/AAC.01831-10. Epub 2011 May 31.


Genome sequence of Vibrio rotiferianus strain DAT722.

Roy Chowdhury P, Boucher Y, Hassan KA, Paulsen IT, Stokes HW, Labbate M.

J Bacteriol. 2011 Jul;193(13):3381-2. doi: 10.1128/JB.05089-11. Epub 2011 May 6.


Dissemination of multiple drug resistance genes by class 1 integrons in Klebsiella pneumoniae isolates from four countries: a comparative study.

Roy Chowdhury P, Ingold A, Vanegas N, Martínez E, Merlino J, Merkier AK, Castro M, González Rocha G, Borthagaray G, Centrón D, Bello Toledo H, Márquez CM, Stokes HW.

Antimicrob Agents Chemother. 2011 Jul;55(7):3140-9. doi: 10.1128/AAC.01529-10. Epub 2011 Apr 25.


Gene flow, mobile genetic elements and the recruitment of antibiotic resistance genes into Gram-negative pathogens.

Stokes HW, Gillings MR.

FEMS Microbiol Rev. 2011 Sep;35(5):790-819. doi: 10.1111/j.1574-6976.2011.00273.x. Epub 2011 May 20. Review.


Crystal structure of an integron gene cassette-associated protein from Vibrio cholerae identifies a cationic drug-binding module.

Deshpande CN, Harrop SJ, Boucher Y, Hassan KA, Di Leo R, Xu X, Cui H, Savchenko A, Chang C, Labbate M, Paulsen IT, Stokes HW, Curmi PM, Mabbutt BC.

PLoS One. 2011 Mar 3;6(3):e16934. doi: 10.1371/journal.pone.0016934.


Coral-mucus-associated Vibrio integrons in the Great Barrier Reef: genomic hotspots for environmental adaptation.

Koenig JE, Bourne DG, Curtis B, Dlutek M, Stokes HW, Doolittle WF, Boucher Y.

ISME J. 2011 Jun;5(6):962-72. doi: 10.1038/ismej.2010.193. Epub 2011 Jan 27.


Marine integrons containing novel integrase genes, attachment sites, attI, and associated gene cassettes in polluted sediments from Suez and Tokyo Bays.

Elsaied H, Stokes HW, Kitamura K, Kurusu Y, Kamagata Y, Maruyama A.

ISME J. 2011 Jul;5(7):1162-77. doi: 10.1038/ismej.2010.208. Epub 2011 Jan 20.


Preclinical class 1 integron with a complete Tn402-like transposition module.

Sajjad A, Holley MP, Labbate M, Stokes HW, Gillings MR.

Appl Environ Microbiol. 2011 Jan;77(1):335-7. doi: 10.1128/AEM.02142-10. Epub 2010 Oct 29.


Class 1 integrons in benthic bacterial communities: abundance, association with Tn402-like transposition modules and evidence for coselection with heavy-metal resistance.

Rosewarne CP, Pettigrove V, Stokes HW, Parsons YM.

FEMS Microbiol Ecol. 2010 Apr;72(1):35-46. doi: 10.1111/j.1574-6941.2009.00823.x. Epub 2009 Dec 2.


Tn6060, a transposon from a genomic island in a Pseudomonas aeruginosa clinical isolate that includes two class 1 integrons.

Roy Chowdhury P, Merlino J, Labbate M, Cheong EY, Gottlieb T, Stokes HW.

Antimicrob Agents Chemother. 2009 Dec;53(12):5294-6. doi: 10.1128/AAC.00687-09. Epub 2009 Sep 14.


First clinical case of a locally acquired carbapenem-resistant VIM-1 metallo-beta-lactamase in Pseudomonas aeruginosa in Australia.

Merlino J, Stokes HW, Cheong EY, Gottlieb T.

Med J Aust. 2009 Sep 7;191(5):289. No abstract available.


Mobilization of a Tn402-like class 1 integron with a novel cassette array via flanking miniature inverted-repeat transposable element-like structures.

Gillings MR, Labbate M, Sajjad A, Giguère NJ, Holley MP, Stokes HW.

Appl Environ Microbiol. 2009 Sep;75(18):6002-4. doi: 10.1128/AEM.01033-09. Epub 2009 Jul 31.


Evidence for dynamic exchange of qac gene cassettes between class 1 integrons and other integrons in freshwater biofilms.

Gillings MR, Holley MP, Stokes HW.

FEMS Microbiol Lett. 2009 Jun;296(2):282-8. doi: 10.1111/j.1574-6968.2009.01646.x. Epub 2009 May 8.


ACID: annotation of cassette and integron data.

Joss MJ, Koenig JE, Labbate M, Polz MF, Gillings MR, Stokes HW, Doolittle WF, Boucher Y.

BMC Bioinformatics. 2009 Apr 21;10:118. doi: 10.1186/1471-2105-10-118.


The integron/gene cassette system: an active player in bacterial adaptation.

Labbate M, Case RJ, Stokes HW.

Methods Mol Biol. 2009;532:103-25. doi: 10.1007/978-1-60327-853-9_6. Review.


Gene cassettes encoding resistance to quaternary ammonium compounds: a role in the origin of clinical class 1 integrons?

Gillings MR, Xuejun D, Hardwick SA, Holley MP, Stokes HW.

ISME J. 2009 Feb;3(2):209-15. doi: 10.1038/ismej.2008.98. Epub 2008 Oct 16.


Recovery of a functional class 2 integron from an Escherichia coli strain mediating a urinary tract infection.

Márquez C, Labbate M, Ingold AJ, Roy Chowdhury P, Ramírez MS, Centrón D, Borthagaray G, Stokes HW.

Antimicrob Agents Chemother. 2008 Nov;52(11):4153-4. doi: 10.1128/AAC.00710-08. Epub 2008 Sep 15.


Urinary tract infections in a South American population: dynamic spread of class 1 integrons and multidrug resistance by homologous and site-specific recombination.

Márquez C, Labbate M, Raymondo C, Fernández J, Gestal AM, Holley M, Borthagaray G, Stokes HW.

J Clin Microbiol. 2008 Oct;46(10):3417-25. doi: 10.1128/JCM.00835-08. Epub 2008 Aug 27.


Structural genomics of the bacterial mobile metagenome: an overview.

Robinson A, Guilfoyle AP, Sureshan V, Howell M, Harrop SJ, Boucher Y, Stokes HW, Curmi PM, Mabbutt BC.

Methods Mol Biol. 2008;426:589-95. doi: 10.1007/978-1-60327-058-8_39.


A class 1 integron present in a human commensal has a hybrid transposition module compared to Tn402: evidence of interaction with mobile DNA from natural environments.

Labbate M, Roy Chowdhury P, Stokes HW.

J Bacteriol. 2008 Aug;190(15):5318-27. doi: 10.1128/JB.00199-08. Epub 2008 May 23.


The evolution of class 1 integrons and the rise of antibiotic resistance.

Gillings M, Boucher Y, Labbate M, Holmes A, Krishnan S, Holley M, Stokes HW.

J Bacteriol. 2008 Jul;190(14):5095-100. doi: 10.1128/JB.00152-08. Epub 2008 May 16.


Influence of industrial contamination on mobile genetic elements: class 1 integron abundance and gene cassette structure in aquatic bacterial communities.

Wright MS, Baker-Austin C, Lindell AH, Stepanauskas R, Stokes HW, McArthur JV.

ISME J. 2008 Apr;2(4):417-28. doi: 10.1038/ismej.2008.8. Epub 2008 Feb 14.


Integron-associated gene cassettes in Halifax Harbour: assessment of a mobile gene pool in marine sediments.

Koenig JE, Boucher Y, Charlebois RL, Nesbø C, Zhaxybayeva O, Bapteste E, Spencer M, Joss MJ, Stokes HW, Doolittle WF.

Environ Microbiol. 2008 Apr;10(4):1024-38. doi: 10.1111/j.1462-2920.2007.01524.x. Epub 2008 Jan 7.


Quantification of class 1 integron abundance in natural environments using real-time quantitative PCR.

Hardwick SA, Stokes HW, Findlay S, Taylor M, Gillings MR.

FEMS Microbiol Lett. 2008 Jan;278(2):207-12. Epub 2007 Nov 26.


A putative house-cleaning enzyme encoded within an integron array: 1.8 A crystal structure defines a new MazG subtype.

Robinson A, Guilfoyle AP, Harrop SJ, Boucher Y, Stokes HW, Curmi PM, Mabbutt BC.

Mol Microbiol. 2007 Nov;66(3):610-21. Epub 2007 Sep 24.


Novel and diverse integron integrase genes and integron-like gene cassettes are prevalent in deep-sea hydrothermal vents.

Elsaied H, Stokes HW, Nakamura T, Kitamura K, Fuse H, Maruyama A.

Environ Microbiol. 2007 Sep;9(9):2298-312.


Integrons: mobilizable platforms that promote genetic diversity in bacteria.

Boucher Y, Labbate M, Koenig JE, Stokes HW.

Trends Microbiol. 2007 Jul;15(7):301-9. Epub 2007 Jun 12.


Use of chromosomal integron arrays as a phylogenetic typing system for Vibrio cholerae pandemic strains.

Labbate M, Boucher Y, Joss MJ, Michael CA, Gillings MR, Stokes HW.

Microbiology. 2007 May;153(Pt 5):1488-98.


Tn1403, a multiple-antibiotic resistance transposon made up of three distinct transposons.

Stokes HW, Elbourne LD, Hall RM.

Antimicrob Agents Chemother. 2007 May;51(5):1827-9. Epub 2007 Jan 29.


What are superintegrons?

Hall RM, Holmes AJ, Roy PH, Stokes HW.

Nat Rev Microbiol. 2007 Feb;5(2):C1; author reply C2. No abstract available.


Class 1 integrons potentially predating the association with tn402-like transposition genes are present in a sediment microbial community.

Stokes HW, Nesbø CL, Holley M, Bahl MI, Gillings MR, Boucher Y.

J Bacteriol. 2006 Aug;188(16):5722-30.


In vitro transposon mutagenesis of an equine herpesvirus 1 genome cloned as a bacterial artificial chromosome.

Hansen K, Napier I, Koen M, Bradford S, Messerle M, Bell E, Seshadri L, Stokes HW, Birch D, Whalley JM.

Arch Virol. 2006 Dec;151(12):2389-405. Epub 2006 Jul 21.


Identification of bla(CMY-7) and associated plasmid-mediated resistance genes in multidrug-resistant Escherichia coli isolated from dogs at a veterinary teaching hospital in Australia.

Sidjabat HE, Townsend KM, Hanson ND, Bell JM, Stokes HW, Gobius KS, Moss SM, Trott DJ.

J Antimicrob Chemother. 2006 May;57(5):840-8. Epub 2006 Mar 8.


Recovery and evolutionary analysis of complete integron gene cassette arrays from Vibrio.

Boucher Y, Nesbø CL, Joss MJ, Robinson A, Mabbutt BC, Gillings MR, Doolittle WF, Stokes HW.

BMC Evol Biol. 2006 Jan 18;6:3.


Improving protein solubility: the use of the Escherichia coli dihydrofolate reductase gene as a fusion reporter.

Liu JW, Boucher Y, Stokes HW, Ollis DL.

Protein Expr Purif. 2006 May;47(1):258-63. Epub 2005 Dec 19.


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