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Items: 31

1.

Detection of Coxiella burnetii in heart valve sections by fluorescence in situ hybridization.

Aistleitner K, Jeske R, Wölfel R, Wießner A, Kikhney J, Moter A, Stoecker K.

J Med Microbiol. 2018 Apr;67(4):537-542. doi: 10.1099/jmm.0.000704. Epub 2018 Feb 20.

PMID:
29461187
2.

Deep Sequencing of RNA from Blood and Oral Swab Samples Reveals the Presence of Nucleic Acid from a Number of Pathogens in Patients with Acute Ebola Virus Disease and Is Consistent with Bacterial Translocation across the Gut.

Carroll MW, Haldenby S, Rickett NY, Pályi B, Garcia-Dorival I, Liu X, Barker G, Bore JA, Koundouno FR, Williamson ED, Laws TR, Kerber R, Sissoko D, Magyar N, Di Caro A, Biava M, Fletcher TE, Sprecher A, Ng LFP, Rénia L, Magassouba N, Günther S, Wölfel R, Stoecker K, Matthews DA, Hiscox JA.

mSphere. 2017 Aug 23;2(4). pii: e00325-17. doi: 10.1128/mSphereDirect.00325-17. eCollection 2017 Jul-Aug.

3.

Virus genomes reveal factors that spread and sustained the Ebola epidemic.

Dudas G, Carvalho LM, Bedford T, Tatem AJ, Baele G, Faria NR, Park DJ, Ladner JT, Arias A, Asogun D, Bielejec F, Caddy SL, Cotten M, D'Ambrozio J, Dellicour S, Di Caro A, Diclaro JW, Duraffour S, Elmore MJ, Fakoli LS, Faye O, Gilbert ML, Gevao SM, Gire S, Gladden-Young A, Gnirke A, Goba A, Grant DS, Haagmans BL, Hiscox JA, Jah U, Kugelman JR, Liu D, Lu J, Malboeuf CM, Mate S, Matthews DA, Matranga CB, Meredith LW, Qu J, Quick J, Pas SD, Phan MVT, Pollakis G, Reusken CB, Sanchez-Lockhart M, Schaffner SF, Schieffelin JS, Sealfon RS, Simon-Loriere E, Smits SL, Stoecker K, Thorne L, Tobin EA, Vandi MA, Watson SJ, West K, Whitmer S, Wiley MR, Winnicki SM, Wohl S, Wölfel R, Yozwiak NL, Andersen KG, Blyden SO, Bolay F, Carroll MW, Dahn B, Diallo B, Formenty P, Fraser C, Gao GF, Garry RF, Goodfellow I, Günther S, Happi CT, Holmes EC, Kargbo B, Keïta S, Kellam P, Koopmans MPG, Kuhn JH, Loman NJ, Magassouba N, Naidoo D, Nichol ST, Nyenswah T, Palacios G, Pybus OG, Sabeti PC, Sall A, Ströher U, Wurie I, Suchard MA, Lemey P, Rambaut A.

Nature. 2017 Apr 20;544(7650):309-315. doi: 10.1038/nature22040. Epub 2017 Apr 12.

4.

MinION as part of a biomedical rapidly deployable laboratory.

Walter MC, Zwirglmaier K, Vette P, Holowachuk SA, Stoecker K, Genzel GH, Antwerpen MH.

J Biotechnol. 2017 May 20;250:16-22. doi: 10.1016/j.jbiotec.2016.12.006. Epub 2016 Dec 6.

PMID:
27939320
5.

Analysis of Diagnostic Findings From the European Mobile Laboratory in Guéckédou, Guinea, March 2014 Through March 2015.

Kerber R, Krumkamp R, Diallo B, Jaeger A, Rudolf M, Lanini S, Bore JA, Koundouno FR, Becker-Ziaja B, Fleischmann E, Stoecker K, Meschi S, Mély S, Newman EN, Carletti F, Portmann J, Korva M, Wolff S, Molkenthin P, Kis Z, Kelterbaum A, Bocquin A, Strecker T, Fizet A, Castilletti C, Schudt G, Ottowell L, Kurth A, Atkinson B, Badusche M, Cannas A, Pallasch E, Bosworth A, Yue C, Pályi B, Ellerbrok H, Kohl C, Oestereich L, Logue CH, Lüdtke A, Richter M, Ngabo D, Borremans B, Becker D, Gryseels S, Abdellati S, Vermoesen T, Kuisma E, Kraus A, Liedigk B, Maes P, Thom R, Duraffour S, Diederich S, Hinzmann J, Afrough B, Repits J, Mertens M, Vitoriano I, Bah A, Sachse A, Boettcher JP, Wurr S, Bockholt S, Nitsche A, Županc TA, Strasser M, Ippolito G, Becker S, Raoul H, Carroll MW, De Clerck H, Van Herp M, Sprecher A, Koivogui L, Magassouba N, Keïta S, Drury P, Gurry C, Formenty P, May J, Gabriel M, Wölfel R, Günther S, Di Caro A.

J Infect Dis. 2016 Oct 15;214(suppl 3):S250-S257. Epub 2016 Sep 16.

6.

Unique human immune signature of Ebola virus disease in Guinea.

Ruibal P, Oestereich L, Lüdtke A, Becker-Ziaja B, Wozniak DM, Kerber R, Korva M, Cabeza-Cabrerizo M, Bore JA, Koundouno FR, Duraffour S, Weller R, Thorenz A, Cimini E, Viola D, Agrati C, Repits J, Afrough B, Cowley LA, Ngabo D, Hinzmann J, Mertens M, Vitoriano I, Logue CH, Boettcher JP, Pallasch E, Sachse A, Bah A, Nitzsche K, Kuisma E, Michel J, Holm T, Zekeng EG, García-Dorival I, Wölfel R, Stoecker K, Fleischmann E, Strecker T, Di Caro A, Avšič-Županc T, Kurth A, Meschi S, Mély S, Newman E, Bocquin A, Kis Z, Kelterbaum A, Molkenthin P, Carletti F, Portmann J, Wolff S, Castilletti C, Schudt G, Fizet A, Ottowell LJ, Herker E, Jacobs T, Kretschmer B, Severi E, Ouedraogo N, Lago M, Negredo A, Franco L, Anda P, Schmiedel S, Kreuels B, Wichmann D, Addo MM, Lohse AW, De Clerck H, Nanclares C, Jonckheere S, Van Herp M, Sprecher A, Xiaojiang G, Carrington M, Miranda O, Castro CM, Gabriel M, Drury P, Formenty P, Diallo B, Koivogui L, Magassouba N, Carroll MW, Günther S, Muñoz-Fontela C.

Nature. 2016 May 5;533(7601):100-4. doi: 10.1038/nature17949.

7.

Real-time, portable genome sequencing for Ebola surveillance.

Quick J, Loman NJ, Duraffour S, Simpson JT, Severi E, Cowley L, Bore JA, Koundouno R, Dudas G, Mikhail A, Ouédraogo N, Afrough B, Bah A, Baum JH, Becker-Ziaja B, Boettcher JP, Cabeza-Cabrerizo M, Camino-Sanchez A, Carter LL, Doerrbecker J, Enkirch T, Dorival IGG, Hetzelt N, Hinzmann J, Holm T, Kafetzopoulou LE, Koropogui M, Kosgey A, Kuisma E, Logue CH, Mazzarelli A, Meisel S, Mertens M, Michel J, Ngabo D, Nitzsche K, Pallash E, Patrono LV, Portmann J, Repits JG, Rickett NY, Sachse A, Singethan K, Vitoriano I, Yemanaberhan RL, Zekeng EG, Trina R, Bello A, Sall AA, Faye O, Faye O, Magassouba N, Williams CV, Amburgey V, Winona L, Davis E, Gerlach J, Washington F, Monteil V, Jourdain M, Bererd M, Camara A, Somlare H, Camara A, Gerard M, Bado G, Baillet B, Delaune D, Nebie KY, Diarra A, Savane Y, Pallawo RB, Gutierrez GJ, Milhano N, Roger I, Williams CJ, Yattara F, Lewandowski K, Taylor J, Rachwal P, Turner D, Pollakis G, Hiscox JA, Matthews DA, O'Shea MK, Johnston AM, Wilson D, Hutley E, Smit E, Di Caro A, Woelfel R, Stoecker K, Fleischmann E, Gabriel M, Weller SA, Koivogui L, Diallo B, Keita S, Rambaut A, Formenty P, Gunther S, Carroll MW.

Nature. 2016 Feb 11;530(7589):228-232. doi: 10.1038/nature16996. Epub 2016 Feb 3.

8.

Inhibition of fat cell differentiation in 3T3-L1 pre-adipocytes by all-trans retinoic acid: Integrative analysis of transcriptomic and phenotypic data.

Stoecker K, Sass S, Theis FJ, Hauner H, Pfaffl MW.

Biomol Detect Quantif. 2016 Nov 21;11:31-44. doi: 10.1016/j.bdq.2016.11.001. eCollection 2017 Mar.

9.

Mobile diagnostics in outbreak response, not only for Ebola: a blueprint for a modular and robust field laboratory.

Wölfel R, Stoecker K, Fleischmann E, Gramsamer B, Wagner M, Molkenthin P, Di Caro A, Günther S, Ibrahim S, Genzel GH, Ozin-Hofsäss AJ, Formenty P, Zöller L.

Euro Surveill. 2015;20(44). doi: 10.2807/1560-7917.ES.2015.20.44.30055.

10.

Temporal and spatial analysis of the 2014-2015 Ebola virus outbreak in West Africa.

Carroll MW, Matthews DA, Hiscox JA, Elmore MJ, Pollakis G, Rambaut A, Hewson R, García-Dorival I, Bore JA, Koundouno R, Abdellati S, Afrough B, Aiyepada J, Akhilomen P, Asogun D, Atkinson B, Badusche M, Bah A, Bate S, Baumann J, Becker D, Becker-Ziaja B, Bocquin A, Borremans B, Bosworth A, Boettcher JP, Cannas A, Carletti F, Castilletti C, Clark S, Colavita F, Diederich S, Donatus A, Duraffour S, Ehichioya D, Ellerbrok H, Fernandez-Garcia MD, Fizet A, Fleischmann E, Gryseels S, Hermelink A, Hinzmann J, Hopf-Guevara U, Ighodalo Y, Jameson L, Kelterbaum A, Kis Z, Kloth S, Kohl C, Korva M, Kraus A, Kuisma E, Kurth A, Liedigk B, Logue CH, Lüdtke A, Maes P, McCowen J, Mély S, Mertens M, Meschi S, Meyer B, Michel J, Molkenthin P, Muñoz-Fontela C, Muth D, Newman EN, Ngabo D, Oestereich L, Okosun J, Olokor T, Omiunu R, Omomoh E, Pallasch E, Pályi B, Portmann J, Pottage T, Pratt C, Priesnitz S, Quartu S, Rappe J, Repits J, Richter M, Rudolf M, Sachse A, Schmidt KM, Schudt G, Strecker T, Thom R, Thomas S, Tobin E, Tolley H, Trautner J, Vermoesen T, Vitoriano I, Wagner M, Wolff S, Yue C, Capobianchi MR, Kretschmer B, Hall Y, Kenny JG, Rickett NY, Dudas G, Coltart CE, Kerber R, Steer D, Wright C, Senyah F, Keita S, Drury P, Diallo B, de Clerck H, Van Herp M, Sprecher A, Traore A, Diakite M, Konde MK, Koivogui L, Magassouba N, Avšič-Županc T, Nitsche A, Strasser M, Ippolito G, Becker S, Stoecker K, Gabriel M, Raoul H, Di Caro A, Wölfel R, Formenty P, Günther S.

Nature. 2015 Aug 6;524(7563):97-101. doi: 10.1038/nature14594. Epub 2015 Jun 17.

PMID:
26083749
11.

Field Evaluation of Capillary Blood Samples as a Collection Specimen for the Rapid Diagnosis of Ebola Virus Infection During an Outbreak Emergency.

Strecker T, Palyi B, Ellerbrok H, Jonckheere S, de Clerck H, Bore JA, Gabriel M, Stoecker K, Eickmann M, van Herp M, Formenty P, Di Caro A, Becker S.

Clin Infect Dis. 2015 Sep 1;61(5):669-75. doi: 10.1093/cid/civ397. Epub 2015 May 19.

12.

Whole-genome sequencing of a pandoravirus isolated from keratitis-inducing acanthamoeba.

Antwerpen MH, Georgi E, Zoeller L, Woelfel R, Stoecker K, Scheid P.

Genome Announc. 2015 Mar 26;3(2). pii: e00136-15. doi: 10.1128/genomeA.00136-15.

13.

Evidence for a decrease in transmission of Ebola virus--Lofa County, Liberia, June 8-November 1, 2014.

Sharma A, Heijenberg N, Peter C, Bolongei J, Reeder B, Alpha T, Sterk E, Robert H, Kurth A, Cannas A, Bocquin A, Strecker T, Logue C, Di Caro A, Pottage T, Yue C, Stoecker K, Wölfel R, Gabriel M, Günther S, Damon I; Centers for Disease Control and Prevention (CDC).

MMWR Morb Mortal Wkly Rep. 2014 Nov 21;63(46):1067-71.

14.

Posttranscriptional regulatory networks: from expression profiling to integrative analysis of mRNA and microRNA data.

Meyer SU, Stoecker K, Sass S, Theis FJ, Pfaffl MW.

Methods Mol Biol. 2014;1160:165-88. doi: 10.1007/978-1-4939-0733-5_15.

PMID:
24740230
15.

Response to comments on "Invasive harlequin ladybird carries biological weapons against native competitors".

Vilcinskas A, Stoecker K, Schmidtberg H, Röhrich CR, Vogel H.

Science. 2013 Sep 20;341(6152):1342. doi: 10.1126/science.1242484.

16.

Invasive harlequin ladybird carries biological weapons against native competitors.

Vilcinskas A, Stoecker K, Schmidtberg H, Röhrich CR, Vogel H.

Science. 2013 May 17;340(6134):862-3. doi: 10.1126/science.1234032.

17.

A straightforward DOPE (double labeling of oligonucleotide probes)-FISH (fluorescence in situ hybridization) method for simultaneous multicolor detection of six microbial populations.

Behnam F, Vilcinskas A, Wagner M, Stoecker K.

Appl Environ Microbiol. 2012 Aug;78(15):5138-42. doi: 10.1128/AEM.00977-12. Epub 2012 May 11.

18.

UV-inducible DNA exchange in hyperthermophilic archaea mediated by type IV pili.

Ajon M, Fröls S, van Wolferen M, Stoecker K, Teichmann D, Driessen AJ, Grogan DW, Albers SV, Schleper C.

Mol Microbiol. 2011 Nov;82(4):807-17. doi: 10.1111/j.1365-2958.2011.07861.x. Epub 2011 Oct 18.

19.

Cultivation of an obligate acidophilic ammonia oxidizer from a nitrifying acid soil.

Lehtovirta-Morley LE, Stoecker K, Vilcinskas A, Prosser JI, Nicol GW.

Proc Natl Acad Sci U S A. 2011 Sep 20;108(38):15892-7. doi: 10.1073/pnas.1107196108. Epub 2011 Sep 6.

20.

Paracatenula, an ancient symbiosis between thiotrophic Alphaproteobacteria and catenulid flatworms.

Gruber-Vodicka HR, Dirks U, Leisch N, Baranyi C, Stoecker K, Bulgheresi S, Heindl NR, Horn M, Lott C, Loy A, Wagner M, Ott J.

Proc Natl Acad Sci U S A. 2011 Jul 19;108(29):12078-83. doi: 10.1073/pnas.1105347108. Epub 2011 Jun 27.

21.

Double labeling of oligonucleotide probes for fluorescence in situ hybridization (DOPE-FISH) improves signal intensity and increases rRNA accessibility.

Stoecker K, Dorninger C, Daims H, Wagner M.

Appl Environ Microbiol. 2010 Feb;76(3):922-6. doi: 10.1128/AEM.02456-09. Epub 2009 Dec 4.

22.

Induction of STAP-1 promotes neurotoxic activation of microglia.

Stoecker K, Weigelt K, Ebert S, Karlstetter M, Walczak Y, Langmann T.

Biochem Biophys Res Commun. 2009 Jan 30;379(1):121-6. doi: 10.1016/j.bbrc.2008.12.021. Epub 2008 Dec 17.

PMID:
19100238
23.

Chondroitin sulfate disaccharide stimulates microglia to adopt a novel regulatory phenotype.

Ebert S, Schoeberl T, Walczak Y, Stoecker K, Stempfl T, Moehle C, Weber BH, Langmann T.

J Leukoc Biol. 2008 Sep;84(3):736-40. doi: 10.1189/jlb.0208138. Epub 2008 Jun 12.

PMID:
18550791
24.

A moderately thermophilic ammonia-oxidizing crenarchaeote from a hot spring.

Hatzenpichler R, Lebedeva EV, Spieck E, Stoecker K, Richter A, Daims H, Wagner M.

Proc Natl Acad Sci U S A. 2008 Feb 12;105(6):2134-9. doi: 10.1073/pnas.0708857105. Epub 2008 Feb 4.

25.

Raman-FISH: combining stable-isotope Raman spectroscopy and fluorescence in situ hybridization for the single cell analysis of identity and function.

Huang WE, Stoecker K, Griffiths R, Newbold L, Daims H, Whiteley AS, Wagner M.

Environ Microbiol. 2007 Aug;9(8):1878-89.

PMID:
17635536
26.

Ecophysiology and niche differentiation of Nitrospira-like bacteria, the key nitrite oxidizers in wastewater treatment plants.

Daims H, Maixner F, Lücker S, Stoecker K, Hace K, Wagner M.

Water Sci Technol. 2006;54(1):21-7.

PMID:
16898133
27.

Nitrite concentration influences the population structure of Nitrospira-like bacteria.

Maixner F, Noguera DR, Anneser B, Stoecker K, Wegl G, Wagner M, Daims H.

Environ Microbiol. 2006 Aug;8(8):1487-95.

PMID:
16872410
28.

"Candidatus Thiobios zoothamnicoli," an ectosymbiotic bacterium covering the giant marine ciliate Zoothamnium niveum.

Rinke C, Schmitz-Esser S, Stoecker K, Nussbaumer AD, Molnár DA, Vanura K, Wagner M, Horn M, Ott JA, Bright M.

Appl Environ Microbiol. 2006 Mar;72(3):2014-21.

29.

Cohn's Crenothrix is a filamentous methane oxidizer with an unusual methane monooxygenase.

Stoecker K, Bendinger B, Schöning B, Nielsen PH, Nielsen JL, Baranyi C, Toenshoff ER, Daims H, Wagner M.

Proc Natl Acad Sci U S A. 2006 Feb 14;103(7):2363-7. Epub 2006 Feb 1.

30.

16S rRNA gene-based oligonucleotide microarray for environmental monitoring of the betaproteobacterial order "Rhodocyclales".

Loy A, Schulz C, Lücker S, Schöpfer-Wendels A, Stoecker K, Baranyi C, Lehner A, Wagner M.

Appl Environ Microbiol. 2005 Mar;71(3):1373-86.

31.

Killing of Caenorhabditis elegans by Burkholderia cepacia is controlled by the cep quorum-sensing system.

Köthe M, Antl M, Huber B, Stoecker K, Ebrecht D, Steinmetz I, Eberl L.

Cell Microbiol. 2003 May;5(5):343-51.

PMID:
12713492

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