Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 15

1.

xenoGI: reconstructing the history of genomic island insertions in clades of closely related bacteria.

Bush EC, Clark AE, DeRanek CA, Eng A, Forman J, Heath K, Lee AB, Stoebel DM, Wang Z, Wilber M, Wu H.

BMC Bioinformatics. 2018 Feb 5;19(1):32. doi: 10.1186/s12859-018-2038-0.

2.

Diminishing-returns epistasis decreases adaptability along an evolutionary trajectory.

Wünsche A, Dinh DM, Satterwhite RS, Arenas CD, Stoebel DM, Cooper TF.

Nat Ecol Evol. 2017 Mar 1;1(4):61. doi: 10.1038/s41559-016-0061.

PMID:
28812657
3.

Selecting between-sample RNA-Seq normalization methods from the perspective of their assumptions.

Evans C, Hardin J, Stoebel DM.

Brief Bioinform. 2018 Sep 28;19(5):776-792. doi: 10.1093/bib/bbx008.

4.

Genome-Wide Transcriptional Response to Varying RpoS Levels in Escherichia coli K-12.

Wong GT, Bonocora RP, Schep AN, Beeler SM, Lee Fong AJ, Shull LM, Batachari LE, Dillon M, Evans C, Becker CJ, Bush EC, Hardin J, Wade JT, Stoebel DM.

J Bacteriol. 2017 Mar 14;199(7). pii: e00755-16. doi: 10.1128/JB.00755-16. Print 2017 Apr 1.

5.

Benefit of transferred mutations is better predicted by the fitness of recipients than by their ecological or genetic relatedness.

Wang Y, Diaz Arenas C, Stoebel DM, Flynn K, Knapp E, Dillon MM, Wünsche A, Hatcher PJ, Moore FB, Cooper VS, Cooper TF.

Proc Natl Acad Sci U S A. 2016 May 3;113(18):5047-52. doi: 10.1073/pnas.1524988113. Epub 2016 Apr 18.

6.

Escherichia coli lacking RpoS are rare in natural populations of non-pathogens.

Snyder E, Gordon DM, Stoebel DM.

G3 (Bethesda). 2012 Nov;2(11):1341-4. doi: 10.1534/g3.112.003855. Epub 2012 Nov 1.

7.

Genetic background affects epistatic interactions between two beneficial mutations.

Wang Y, Arenas CD, Stoebel DM, Cooper TF.

Biol Lett. 2013 Feb 23;9(1):20120328. doi: 10.1098/rsbl.2012.0328. Epub 2012 Aug 15.

8.

DNA supercoiling is differentially regulated by environmental factors and FIS in Escherichia coli and Salmonella enterica.

Cameron AD, Stoebel DM, Dorman CJ.

Mol Microbiol. 2011 Apr;80(1):85-101. doi: 10.1111/j.1365-2958.2011.07560.x. Epub 2011 Feb 15.

9.

Waste and yet want not.

Stoebel DM, Dykhuizen DE.

Mol Cell. 2010 Jun 11;38(5):625-6. doi: 10.1016/j.molcel.2010.05.028.

10.

The effect of mobile element IS10 on experimental regulatory evolution in Escherichia coli.

Stoebel DM, Dorman CJ.

Mol Biol Evol. 2010 Sep;27(9):2105-12. doi: 10.1093/molbev/msq101. Epub 2010 Apr 16.

11.

Compensatory evolution of gene regulation in response to stress by Escherichia coli lacking RpoS.

Stoebel DM, Hokamp K, Last MS, Dorman CJ.

PLoS Genet. 2009 Oct;5(10):e1000671. doi: 10.1371/journal.pgen.1000671. Epub 2009 Oct 2.

12.

Anti-silencing: overcoming H-NS-mediated repression of transcription in Gram-negative enteric bacteria.

Stoebel DM, Free A, Dorman CJ.

Microbiology. 2008 Sep;154(Pt 9):2533-45. doi: 10.1099/mic.0.2008/020693-0. Review.

PMID:
18757787
13.

The cost of expression of Escherichia coli lac operon proteins is in the process, not in the products.

Stoebel DM, Dean AM, Dykhuizen DE.

Genetics. 2008 Mar;178(3):1653-60. doi: 10.1534/genetics.107.085399. Epub 2008 Feb 3.

14.

Lack of evidence for horizontal transfer of the lac operon into Escherichia coli.

Stoebel DM.

Mol Biol Evol. 2005 Mar;22(3):683-90. Epub 2004 Nov 24. Erratum in: Mol Biol Evol. 2005 Apr;22(4):1159.

PMID:
15563718
15.

SIZE DOESN'T MATTER: MICROBIAL SELECTION EXPERIMENTS ADDRESS ECOLOGICAL PHENOMENA.

Feldgarden M, Stoebel DM, Brisson D, Dykhuizen DE.

Ecology. 2003 Jul;84(7):1679-1687.

Supplemental Content

Loading ...
Support Center