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Items: 12

1.

An empirical analysis of journal policy effectiveness for computational reproducibility.

Stodden V, Seiler J, Ma Z.

Proc Natl Acad Sci U S A. 2018 Mar 13;115(11):2584-2589. doi: 10.1073/pnas.1708290115. Epub 2018 Mar 12.

2.

Reproducibility of research: Issues and proposed remedies.

Allison DB, Shiffrin RM, Stodden V.

Proc Natl Acad Sci U S A. 2018 Mar 13;115(11):2561-2562. doi: 10.1073/pnas.1802324115. Epub 2018 Mar 12. No abstract available.

3.

Reproducibility and replicability of rodent phenotyping in preclinical studies.

Kafkafi N, Agassi J, Chesler EJ, Crabbe JC, Crusio WE, Eilam D, Gerlai R, Golani I, Gomez-Marin A, Heller R, Iraqi F, Jaljuli I, Karp NA, Morgan H, Nicholson G, Pfaff DW, Richter SH, Stark PB, Stiedl O, Stodden V, Tarantino LM, Tucci V, Valdar W, Williams RW, Würbel H, Benjamini Y.

Neurosci Biobehav Rev. 2018 Apr;87:218-232. doi: 10.1016/j.neubiorev.2018.01.003. Epub 2018 Jan 31. Review.

4.

Four simple recommendations to encourage best practices in research software.

Jiménez RC, Kuzak M, Alhamdoosh M, Barker M, Batut B, Borg M, Capella-Gutierrez S, Chue Hong N, Cook M, Corpas M, Flannery M, Garcia L, Gelpí JL, Gladman S, Goble C, González Ferreiro M, Gonzalez-Beltran A, Griffin PC, Grüning B, Hagberg J, Holub P, Hooft R, Ison J, Katz DS, Leskošek B, López Gómez F, Oliveira LJ, Mellor D, Mosbergen R, Mulder N, Perez-Riverol Y, Pergl R, Pichler H, Pope B, Sanz F, Schneider MV, Stodden V, Suchecki R, Svobodová Vařeková R, Talvik HA, Todorov I, Treloar A, Tyagi S, van Gompel M, Vaughan D, Via A, Wang X, Watson-Haigh NS, Crouch S.

F1000Res. 2017 Jun 13;6. pii: ELIXIR-876. doi: 10.12688/f1000research.11407.1. eCollection 2017.

5.

Structuring supplemental materials in support of reproducibility.

Greenbaum D, Rozowsky J, Stodden V, Gerstein M.

Genome Biol. 2017 Apr 5;18(1):64. doi: 10.1186/s13059-017-1205-3.

6.

Enhancing reproducibility for computational methods.

Stodden V, McNutt M, Bailey DH, Deelman E, Gil Y, Hanson B, Heroux MA, Ioannidis JP, Taufer M.

Science. 2016 Dec 9;354(6317):1240-1241. No abstract available.

PMID:
27940837
7.

SCIENTIFIC INTEGRITY. Self-correction in science at work.

Alberts B, Cicerone RJ, Fienberg SE, Kamb A, McNutt M, Nerem RM, Schekman R, Shiffrin R, Stodden V, Suresh S, Zuber MT, Pope BK, Jamieson KH.

Science. 2015 Jun 26;348(6242):1420-2. doi: 10.1126/science.aab3847. No abstract available.

8.

Toward Reproducible Computational Research: An Empirical Analysis of Data and Code Policy Adoption by Journals.

Stodden V, Guo P, Ma Z.

PLoS One. 2013 Jun 21;8(6):e67111. doi: 10.1371/journal.pone.0067111. Print 2013.

9.

Prepublication data sharing.

Toronto International Data Release Workshop Authors, Birney E, Hudson TJ, Green ED, Gunter C, Eddy S, Rogers J, Harris JR, Ehrlich SD, Apweiler R, Austin CP, Berglund L, Bobrow M, Bountra C, Brookes AJ, Cambon-Thomsen A, Carter NP, Chisholm RL, Contreras JL, Cooke RM, Crosby WL, Dewar K, Durbin R, Dyke SO, Ecker JR, El Emam K, Feuk L, Gabriel SB, Gallacher J, Gelbart WM, Granell A, Guarner F, Hubbard T, Jackson SA, Jennings JL, Joly Y, Jones SM, Kaye J, Kennedy KL, Knoppers BM, Kyrpides NC, Lowrance WW, Luo J, MacKay JJ, Martín-Rivera L, McCombie WR, McPherson JD, Miller L, Miller W, Moerman D, Mooser V, Morton CC, Ostell JM, Ouellette BF, Parkhill J, Raina PS, Rawlings C, Scherer SE, Scherer SW, Schofield PN, Sensen CW, Stodden VC, Sussman MR, Tanaka T, Thornton J, Tsunoda T, Valle D, Vuorio EI, Walker NM, Wallace S, Weinstock G, Whitman WB, Worley KC, Wu C, Wu J, Yu J.

Nature. 2009 Sep 10;461(7261):168-70. doi: 10.1038/461168a.

10.

Effects of written information material on help-seeking behavior in patients with erectile dysfunction: a longitudinal study.

Berner MM, Leiber C, Kriston L, Stodden V, Günzler C.

J Sex Med. 2008 Feb;5(2):436-47. Epub 2007 Nov 28.

PMID:
18047486
11.

Virtual Northern analysis of the human genome.

Hurowitz EH, Drori I, Stodden VC, Donoho DL, Brown PO.

PLoS One. 2007 May 23;2(5):e460.

12.

Can written information material help to increase treatment motivation in patients with erectile dysfunction? A survey of 1188 men.

Günzler C, Kriston L, Stodden V, Leiber C, Berner MM.

Int J Impot Res. 2007 May-Jun;19(3):330-5. Epub 2007 Feb 15. Erratum in: Int J Impot Res. 2007 Sep-Oct;19(5):531.

PMID:
17304205

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