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Metabolic profiles of six African cultivars of cassava (Manihot esculenta Crantz) highlight bottlenecks of root yield.

Obata T, Klemens PAW, Rosado-Souza L, Schlereth A, Gisel A, Stavolone L, Zierer W, Morales N, Mueller LA, Zeeman SC, Ludewig F, Stitt M, Sonnewald U, Ekkehard Neuhaus H, Fernie AR.

Plant J. 2020 Jan 17. doi: 10.1111/tpj.14693. [Epub ahead of print]


Cassava Metabolomics and Starch Quality.

Rosado-Souza L, David LC, Drapal M, Fraser PD, Hofmann J, Klemens PAW, Ludewig F, Neuhaus HE, Obata T, Perez-Fons L, Schlereth A, Sonnewald U, Stitt M, Zeeman SC, Zierer W, Fernie AR.

Curr Protoc Plant Biol. 2019 Dec;4(4):e20102. doi: 10.1002/cppb.20102.


Relationship between irradiance and levels of Calvin-Benson cycle and other intermediates in the model eudicot Arabidopsis and the model monocot rice.

Borghi GL, Moraes TA, Günther M, Feil R, Mengin V, Lunn JE, Stitt M, Arrivault S.

J Exp Bot. 2019 Oct 24;70(20):5809-5825. doi: 10.1093/jxb/erz346.


Feedback regulation by trehalose 6-phosphate slows down starch mobilization below the rate that would exhaust starch reserves at dawn in Arabidopsis leaves.

Dos Anjos L, Pandey PK, Moraes TA, Feil R, Lunn JE, Stitt M.

Plant Direct. 2018 Aug 13;2(8):e00078. doi: 10.1002/pld3.78. eCollection 2018 Aug.


Modeling Protein Destiny in Developing Fruit.

Belouah I, Nazaret C, Pétriacq P, Prigent S, Bénard C, Mengin V, Blein-Nicolas M, Denton AK, Balliau T, Augé S, Bouchez O, Mazat JP, Stitt M, Usadel B, Zivy M, Beauvoit B, Gibon Y, Colombié S.

Plant Physiol. 2019 Jul;180(3):1709-1724. doi: 10.1104/pp.19.00086. Epub 2019 Apr 23.


Metabolite profiles reveal interspecific variation in operation of the Calvin-Benson cycle in both C4 and C3 plants.

Arrivault S, Alexandre Moraes T, Obata T, Medeiros DB, Fernie AR, Boulouis A, Ludwig M, Lunn JE, Borghi GL, Schlereth A, Guenther M, Stitt M.

J Exp Bot. 2019 Mar 27;70(6):1843-1858. doi: 10.1093/jxb/erz051.


Kingdom-wide comparison reveals the evolution of diurnal gene expression in Archaeplastida.

Ferrari C, Proost S, Janowski M, Becker J, Nikoloski Z, Bhattacharya D, Price D, Tohge T, Bar-Even A, Fernie A, Stitt M, Mutwil M.

Nat Commun. 2019 Feb 13;10(1):737. doi: 10.1038/s41467-019-08703-2.


Response of the Circadian Clock and Diel Starch Turnover to One Day of Low Light or Low CO2.

Moraes TA, Mengin V, Annunziata MG, Encke B, Krohn N, Höhne M, Stitt M.

Plant Physiol. 2019 Apr;179(4):1457-1478. doi: 10.1104/pp.18.01418. Epub 2019 Jan 22.


Engineering Strategies to Boost Crop Productivity by Cutting Respiratory Carbon Loss.

Amthor JS, Bar-Even A, Hanson AD, Millar AH, Stitt M, Sweetlove LJ, Tyerman SD.

Plant Cell. 2019 Feb;31(2):297-314. doi: 10.1105/tpc.18.00743. Epub 2019 Jan 22. Review.


MapMan4: A Refined Protein Classification and Annotation Framework Applicable to Multi-Omics Data Analysis.

Schwacke R, Ponce-Soto GY, Krause K, Bolger AM, Arsova B, Hallab A, Gruden K, Stitt M, Bolger ME, Usadel B.

Mol Plant. 2019 Jun 3;12(6):879-892. doi: 10.1016/j.molp.2019.01.003. Epub 2019 Jan 9.


Effects of microcompartmentation on flux distribution and metabolic pools in Chlamydomonas reinhardtii chloroplasts.

Küken A, Sommer F, Yaneva-Roder L, Mackinder LC, Höhne M, Geimer S, Jonikas MC, Schroda M, Stitt M, Nikoloski Z, Mettler-Altmann T.

Elife. 2018 Oct 11;7. pii: e37960. doi: 10.7554/eLife.37960.


Multiple circadian clock outputs regulate diel turnover of carbon and nitrogen reserves.

Flis A, Mengin V, Ivakov AA, Mugford ST, Hubberten HM, Encke B, Krohn N, Höhne M, Feil R, Hoefgen R, Lunn JE, Millar AJ, Smith AM, Sulpice R, Stitt M.

Plant Cell Environ. 2019 Feb;42(2):549-573. doi: 10.1111/pce.13440.


Response of Arabidopsis primary metabolism and circadian clock to low night temperature in a natural light environment.

Annunziata MG, Apelt F, Carillo P, Krause U, Feil R, Koehl K, Lunn JE, Stitt M.

J Exp Bot. 2018 Sep 14;69(20):4881-4895. doi: 10.1093/jxb/ery276.


Corrigendum: Spatially resolved metabolic analysis reveals a central role for transcriptional control in carbon allocation to wood.

Roach M, Arrivault S, Mahboubi A, Krohn N, Sulpice R, Stitt M, Niittylä T.

J Exp Bot. 2018 Jul 18;69(16):4143-4144. doi: 10.1093/jxb/ery202. No abstract available.


Photoperiodic control of the Arabidopsis proteome reveals a translational coincidence mechanism.

Seaton DD, Graf A, Baerenfaller K, Stitt M, Millar AJ, Gruissem W.

Mol Syst Biol. 2018 Mar 1;14(3):e7962. doi: 10.15252/msb.20177962.


Carbon Supply and the Regulation of Cell Wall Synthesis.

Verbančič J, Lunn JE, Stitt M, Persson S.

Mol Plant. 2018 Jan 8;11(1):75-94. doi: 10.1016/j.molp.2017.10.004. Epub 2017 Oct 17. Review.


Genome-Wide Association Mapping Reveals That Specific and Pleiotropic Regulatory Mechanisms Fine-Tune Central Metabolism and Growth in Arabidopsis.

Fusari CM, Kooke R, Lauxmann MA, Annunziata MG, Enke B, Hoehne M, Krohn N, Becker FFM, Schlereth A, Sulpice R, Stitt M, Keurentjes JJB.

Plant Cell. 2017 Oct;29(10):2349-2373. doi: 10.1105/tpc.17.00232. Epub 2017 Sep 27.


The Photorespiratory Metabolite 2-Phosphoglycolate Regulates Photosynthesis and Starch Accumulation in Arabidopsis.

Flügel F, Timm S, Arrivault S, Florian A, Stitt M, Fernie AR, Bauwe H.

Plant Cell. 2017 Oct;29(10):2537-2551. doi: 10.1105/tpc.17.00256. Epub 2017 Sep 25.


Trehalose 6-phosphate is involved in triggering axillary bud outgrowth in garden pea (Pisum sativum L.).

Fichtner F, Barbier FF, Feil R, Watanabe M, Annunziata MG, Chabikwa TG, Höfgen R, Stitt M, Beveridge CA, Lunn JE.

Plant J. 2017 Nov;92(4):611-623. doi: 10.1111/tpj.13705. Epub 2017 Oct 6.


Getting back to nature: a reality check for experiments in controlled environments.

Annunziata MG, Apelt F, Carillo P, Krause U, Feil R, Mengin V, Lauxmann MA, Köhl K, Nikoloski Z, Stitt M, Lunn JE, Raines C.

J Exp Bot. 2017 Jul 20;68(16):4463-4477. doi: 10.1093/jxb/erx220.


Leaf Starch Turnover Occurs in Long Days and in Falling Light at the End of the Day.

Fernandez O, Ishihara H, George GM, Mengin V, Flis A, Sumner D, Arrivault S, Feil R, Lunn JE, Zeeman SC, Smith AM, Stitt M.

Plant Physiol. 2017 Aug;174(4):2199-2212. doi: 10.1104/pp.17.00601. Epub 2017 Jun 29.


Omics-based hybrid prediction in maize.

Westhues M, Schrag TA, Heuer C, Thaller G, Utz HF, Schipprack W, Thiemann A, Seifert F, Ehret A, Schlereth A, Stitt M, Nikoloski Z, Willmitzer L, Schön CC, Scholten S, Melchinger AE.

Theor Appl Genet. 2017 Sep;130(9):1927-1939. doi: 10.1007/s00122-017-2934-0. Epub 2017 Jun 24.


Spatially resolved metabolic analysis reveals a central role for transcriptional control in carbon allocation to wood.

Roach M, Arrivault S, Mahboubi A, Krohn N, Sulpice R, Stitt M, Niittylä T.

J Exp Bot. 2017 Jun 15;68(13):3529-3539. doi: 10.1093/jxb/erx200. Erratum in: J Exp Bot. 2018 Jul 18;69(16):4143-4144.


Photosynthate partitioning to starch in Arabidopsis thaliana is insensitive to light intensity but sensitive to photoperiod due to a restriction on growth in the light in short photoperiods.

Mengin V, Pyl ET, Alexandre Moraes T, Sulpice R, Krohn N, Encke B, Stitt M.

Plant Cell Environ. 2017 Nov;40(11):2608-2627. doi: 10.1111/pce.13000. Epub 2017 Aug 17.


Circadian, Carbon, and Light Control of Expansion Growth and Leaf Movement.

Apelt F, Breuer D, Olas JJ, Annunziata MG, Flis A, Nikoloski Z, Kragler F, Stitt M.

Plant Physiol. 2017 Jul;174(3):1949-1968. doi: 10.1104/pp.17.00503. Epub 2017 May 30.


Crops In Silico: Generating Virtual Crops Using an Integrative and Multi-scale Modeling Platform.

Marshall-Colon A, Long SP, Allen DK, Allen G, Beard DA, Benes B, von Caemmerer S, Christensen AJ, Cox DJ, Hart JC, Hirst PM, Kannan K, Katz DS, Lynch JP, Millar AJ, Panneerselvam B, Price ND, Prusinkiewicz P, Raila D, Shekar RG, Shrivastava S, Shukla D, Srinivasan V, Stitt M, Turk MJ, Voit EO, Wang Y, Yin X, Zhu XG.

Front Plant Sci. 2017 May 15;8:786. doi: 10.3389/fpls.2017.00786. eCollection 2017.


Cellulose Synthesis and Cell Expansion Are Regulated by Different Mechanisms in Growing Arabidopsis Hypocotyls.

Ivakov A, Flis A, Apelt F, Fünfgeld M, Scherer U, Stitt M, Kragler F, Vissenberg K, Persson S, Suslov D.

Plant Cell. 2017 Jun;29(6):1305-1315. doi: 10.1105/tpc.16.00782. Epub 2017 May 26.


Growth rate correlates negatively with protein turnover in Arabidopsis accessions.

Ishihara H, Moraes TA, Pyl ET, Schulze WX, Obata T, Scheffel A, Fernie AR, Sulpice R, Stitt M.

Plant J. 2017 Aug;91(3):416-429. doi: 10.1111/tpj.13576. Epub 2017 Jun 13.


The role of Tre6P and SnRK1 in maize early kernel development and events leading to stress-induced kernel abortion.

Bledsoe SW, Henry C, Griffiths CA, Paul MJ, Feil R, Lunn JE, Stitt M, Lagrimini LM.

BMC Plant Biol. 2017 Apr 12;17(1):74. doi: 10.1186/s12870-017-1018-2.


Parallel analysis of Arabidopsis circadian clock mutants reveals different scales of transcriptome and proteome regulation.

Graf A, Coman D, Uhrig RG, Walsh S, Flis A, Stitt M, Gruissem W.

Open Biol. 2017 Mar;7(3). pii: 160333. doi: 10.1098/rsob.160333.


Metabolite pools and carbon flow during C4 photosynthesis in maize: 13CO2 labeling kinetics and cell type fractionation.

Arrivault S, Obata T, Szecówka M, Mengin V, Guenther M, Hoehne M, Fernie AR, Stitt M.

J Exp Bot. 2017 Jan;68(2):283-298. doi: 10.1093/jxb/erw414. Epub 2016 Nov 7.


The Interplay between Carbon Availability and Growth in Different Zones of the Growing Maize Leaf.

Czedik-Eysenberg A, Arrivault S, Lohse MA, Feil R, Krohn N, Encke B, Nunes-Nesi A, Fernie AR, Lunn JE, Sulpice R, Stitt M.

Plant Physiol. 2016 Oct;172(2):943-967. Epub 2016 Aug 31.


Characterization of a recently evolved flavonol-phenylacyltransferase gene provides signatures of natural light selection in Brassicaceae.

Tohge T, Wendenburg R, Ishihara H, Nakabayashi R, Watanabe M, Sulpice R, Hoefgen R, Takayama H, Saito K, Stitt M, Fernie AR.

Nat Commun. 2016 Aug 22;7:12399. doi: 10.1038/ncomms12399.


Correlation-Based Network Analysis of Metabolite and Enzyme Profiles Reveals a Role of Citrate Biosynthesis in Modulating N and C Metabolism in Zea mays.

Toubiana D, Xue W, Zhang N, Kremling K, Gur A, Pilosof S, Gibon Y, Stitt M, Buckler ES, Fernie AR, Fait A.

Front Plant Sci. 2016 Jul 12;7:1022. doi: 10.3389/fpls.2016.01022. eCollection 2016.


Metabolic and Transcriptional Analysis of Durum Wheat Responses to Elevated CO2 at Low and High Nitrate Supply.

Vicente R, Pérez P, Martínez-Carrasco R, Feil R, Lunn JE, Watanabe M, Arrivault S, Stitt M, Hoefgen R, Morcuende R.

Plant Cell Physiol. 2016 Oct;57(10):2133-2146. Epub 2016 Jul 20.


Allelic differences in a vacuolar invertase affect Arabidopsis growth at early plant development.

Leskow CC, Kamenetzky L, Dominguez PG, Díaz Zirpolo JA, Obata T, Costa H, Martí M, Taboga O, Keurentjes J, Sulpice R, Ishihara H, Stitt M, Fernie AR, Carrari F.

J Exp Bot. 2016 Jul;67(14):4091-103. doi: 10.1093/jxb/erw185. Epub 2016 May 18.


A repeat protein links Rubisco to form the eukaryotic carbon-concentrating organelle.

Mackinder LC, Meyer MT, Mettler-Altmann T, Chen VK, Mitchell MC, Caspari O, Freeman Rosenzweig ES, Pallesen L, Reeves G, Itakura A, Roth R, Sommer F, Geimer S, Mühlhaus T, Schroda M, Goodenough U, Stitt M, Griffiths H, Jonikas MC.

Proc Natl Acad Sci U S A. 2016 May 24;113(21):5958-63. doi: 10.1073/pnas.1522866113. Epub 2016 May 10.


Photoperiod-dependent changes in the phase of core clock transcripts and global transcriptional outputs at dawn and dusk in Arabidopsis.

Flis A, Sulpice R, Seaton DD, Ivakov AA, Liput M, Abel C, Millar AJ, Stitt M.

Plant Cell Environ. 2016 Sep;39(9):1955-81. doi: 10.1111/pce.12754. Epub 2016 Jul 15.


Trehalose 6-phosphate coordinates organic and amino acid metabolism with carbon availability.

Figueroa CM, Feil R, Ishihara H, Watanabe M, Kölling K, Krause U, Höhne M, Encke B, Plaxton WC, Zeeman SC, Li Z, Schulze WX, Hoefgen R, Stitt M, Lunn JE.

Plant J. 2016 Feb;85(3):410-23. doi: 10.1111/tpj.13114.


Plants in silico: why, why now and what?--an integrative platform for plant systems biology research.

Zhu XG, Lynch JP, LeBauer DS, Millar AJ, Stitt M, Long SP.

Plant Cell Environ. 2016 May;39(5):1049-57. doi: 10.1111/pce.12673. Epub 2015 Dec 21. Review.


Defining the robust behaviour of the plant clock gene circuit with absolute RNA timeseries and open infrastructure.

Flis A, Fernández AP, Zielinski T, Mengin V, Sulpice R, Stratford K, Hume A, Pokhilko A, Southern MM, Seaton DD, McWatters HG, Stitt M, Halliday KJ, Millar AJ.

Open Biol. 2015 Oct;5(10). pii: 150042. doi: 10.1098/rsob.150042.


50 years of Arabidopsis research: highlights and future directions.

Provart NJ, Alonso J, Assmann SM, Bergmann D, Brady SM, Brkljacic J, Browse J, Chapple C, Colot V, Cutler S, Dangl J, Ehrhardt D, Friesner JD, Frommer WB, Grotewold E, Meyerowitz E, Nemhauser J, Nordborg M, Pikaard C, Shanklin J, Somerville C, Stitt M, Torii KU, Waese J, Wagner D, McCourt P.

New Phytol. 2016 Feb;209(3):921-44. doi: 10.1111/nph.13687. Epub 2015 Oct 14. Review.


Analysis of knockout mutants reveals non-redundant functions of poly(ADP-ribose)polymerase isoforms in Arabidopsis.

Pham PA, Wahl V, Tohge T, de Souza LR, Zhang Y, Do PT, Olas JJ, Stitt M, Araújo WL, Fernie AR.

Plant Mol Biol. 2015 Nov;89(4-5):319-38. doi: 10.1007/s11103-015-0363-5. Epub 2015 Oct 1.


Temporal kinetics of the transcriptional response to carbon depletion and sucrose readdition in Arabidopsis seedlings.

Cookson SJ, Yadav UP, Klie S, Morcuende R, Usadel B, Lunn JE, Stitt M.

Plant Cell Environ. 2016 Apr;39(4):768-86. doi: 10.1111/pce.12642. Epub 2015 Dec 1.


Reproductive failure in Arabidopsis thaliana under transient carbohydrate limitation: flowers and very young siliques are jettisoned and the meristem is maintained to allow successful resumption of reproductive growth.

Lauxmann MA, Annunziata MG, Brunoud G, Wahl V, Koczut A, Burgos A, Olas JJ, Maximova E, Abel C, Schlereth A, Soja AM, Bläsing OE, Lunn JE, Vernoux T, Stitt M.

Plant Cell Environ. 2016 Apr;39(4):745-67. doi: 10.1111/pce.12634. Epub 2016 Jan 21.


Pool size measurements facilitate the determination of fluxes at branching points in non-stationary metabolic flux analysis: the case of Arabidopsis thaliana.

Heise R, Fernie AR, Stitt M, Nikoloski Z.

Front Plant Sci. 2015 Jun 2;6:386. doi: 10.3389/fpls.2015.00386. eCollection 2015.


Comparative transcriptional profiling analysis of developing melon (Cucumis melo L.) fruit from climacteric and non-climacteric varieties.

Saladié M, Cañizares J, Phillips MA, Rodriguez-Concepcion M, Larrigaudière C, Gibon Y, Stitt M, Lunn JE, Garcia-Mas J.

BMC Genomics. 2015 Jun 9;16:440. doi: 10.1186/s12864-015-1649-3.


Synthesis and Use of Stable-Isotope-Labeled Internal Standards for Quantification of Phosphorylated Metabolites by LC-MS/MS.

Arrivault S, Guenther M, Fry SC, Fuenfgeld MM, Veyel D, Mettler-Altmann T, Stitt M, Lunn JE.

Anal Chem. 2015 Jul 7;87(13):6896-904. doi: 10.1021/acs.analchem.5b01387. Epub 2015 Jun 9.


Genome-wide association of carbon and nitrogen metabolism in the maize nested association mapping population.

Zhang N, Gibon Y, Wallace JG, Lepak N, Li P, Dedow L, Chen C, So YS, Kremling K, Bradbury PJ, Brutnell T, Stitt M, Buckler ES.

Plant Physiol. 2015 Jun;168(2):575-83. doi: 10.1104/pp.15.00025. Epub 2015 Apr 27.


Reduced levels of NADH-dependent glutamate dehydrogenase decrease the glutamate content of ripe tomato fruit but have no effect on green fruit or leaves.

Ferraro G, D'Angelo M, Sulpice R, Stitt M, Valle EM.

J Exp Bot. 2015 Jun;66(11):3381-9. doi: 10.1093/jxb/erv150. Epub 2015 Apr 15.


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