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Items: 1 to 50 of 110

1.

Methods and Strategies to Examine the Human Breastmilk Microbiome.

LeMay-Nedjelski L, Copeland J, Wang PW, Butcher J, Unger S, Stintzi A, O'Connor DL.

Methods Mol Biol. 2018;1849:63-86. doi: 10.1007/978-1-4939-8728-3_5.

PMID:
30298248
2.

Metaproteomics reveals associations between microbiome and intestinal extracellular vesicle proteins in pediatric inflammatory bowel disease.

Zhang X, Deeke SA, Ning Z, Starr AE, Butcher J, Li J, Mayne J, Cheng K, Liao B, Li L, Singleton R, Mack D, Stintzi A, Figeys D.

Nat Commun. 2018 Jul 20;9(1):2873. doi: 10.1038/s41467-018-05357-4.

3.

Variation on a theme: investigating the structural repertoires used by ferric uptake regulators to control gene expression.

Sarvan S, Butcher J, Stintzi A, Couture JF.

Biometals. 2018 Oct;31(5):681-704. doi: 10.1007/s10534-018-0120-8. Epub 2018 Jul 16. Review.

PMID:
30014354
4.

The tomato subtilase family includes several cell death-related proteinases with caspase specificity.

Reichardt S, Repper D, Tuzhikov AI, Galiullina RA, Planas-Marquès M, Chichkova NV, Vartapetian AB, Stintzi A, Schaller A.

Sci Rep. 2018 Jul 12;8(1):10531. doi: 10.1038/s41598-018-28769-0.

5.

Disruption of maternal gut microbiota during gestation alters offspring microbiota and immunity.

Nyangahu DD, Lennard KS, Brown BP, Darby MG, Wendoh JM, Havyarimana E, Smith P, Butcher J, Stintzi A, Mulder N, Horsnell W, Jaspan HB.

Microbiome. 2018 Jul 7;6(1):124. doi: 10.1186/s40168-018-0511-7.

6.

Transcriptomic Analysis of the Campylobacter jejuni Response to T4-Like Phage NCTC 12673 Infection.

Sacher JC, Flint A, Butcher J, Blasdel B, Reynolds HM, Lavigne R, Stintzi A, Szymanski CM.

Viruses. 2018 Jun 16;10(6). pii: E332. doi: 10.3390/v10060332.

7.

Crystal structure of Campylobacter jejuni peroxide regulator.

Sarvan S, Charih F, Butcher J, Brunzelle JS, Stintzi A, Couture JF.

FEBS Lett. 2018 Jul;592(13):2351-2360. doi: 10.1002/1873-3468.13120. Epub 2018 Jun 14.

PMID:
29856899
8.

Functional insights into the interplay between DNA interaction and metal coordination in ferric uptake regulators.

Sarvan S, Charih F, Askoura M, Butcher J, Brunzelle JS, Stintzi A, Couture JF.

Sci Rep. 2018 May 8;8(1):7140. doi: 10.1038/s41598-018-25157-6.

9.

Independent of Birth Mode or Gestational Age, Very-Low-Birth-Weight Infants Fed Their Mothers' Milk Rapidly Develop Personalized Microbiotas Low in Bifidobacterium.

Butcher J, Unger S, Li J, Bando N, Romain G, Francis J, Mottawea W, Mack D, Stintzi A, O'Connor DL.

J Nutr. 2018 Mar 1;148(3):326-335. doi: 10.1093/jn/nxx071.

PMID:
29546315
10.

Mucosal-luminal interface proteomics reveals biomarkers of pediatric inflammatory bowel disease-associated colitis.

Deeke SA, Starr AE, Ning Z, Ahmadi S, Zhang X, Mayne J, Chiang CK, Singleton R, Benchimol EI, Mack DR, Stintzi A, Figeys D.

Am J Gastroenterol. 2018 May;113(5):713-724. doi: 10.1038/s41395-018-0024-9. Epub 2018 Mar 12.

PMID:
29531307
11.

Children's perspectives on the benefits and burdens of research participation.

Barned C, Dobson J, Stintzi A, Mack D, O'Doherty KC.

AJOB Empir Bioeth. 2018 Jan-Mar;9(1):19-28. doi: 10.1080/23294515.2018.1430709. Epub 2018 Feb 16.

PMID:
29369013
12.

Blenderized Enteral Nutrition Diet Study: Feasibility, Clinical, and Microbiome Outcomes of Providing Blenderized Feeds Through a Gastric Tube in a Medically Complex Pediatric Population.

Gallagher K, Flint A, Mouzaki M, Carpenter A, Haliburton B, Bannister L, Norgrove H, Hoffman L, Mack D, Stintzi A, Marcon M.

JPEN J Parenter Enteral Nutr. 2018 Aug;42(6):1046-1060. doi: 10.1002/jpen.1049. Epub 2018 Jan 16.

PMID:
29338077
13.

An OPR3-independent pathway uses 4,5-didehydrojasmonate for jasmonate synthesis.

Chini A, Monte I, Zamarreño AM, Hamberg M, Lassueur S, Reymond P, Weiss S, Stintzi A, Schaller A, Porzel A, García-Mina JM, Solano R.

Nat Chem Biol. 2018 Feb;14(2):171-178. doi: 10.1038/nchembio.2540. Epub 2018 Jan 1.

PMID:
29291349
14.

MetaLab: an automated pipeline for metaproteomic data analysis.

Cheng K, Ning Z, Zhang X, Li L, Liao B, Mayne J, Stintzi A, Figeys D.

Microbiome. 2017 Dec 2;5(1):157. doi: 10.1186/s40168-017-0375-2.

15.

Evaluating in Vitro Culture Medium of Gut Microbiome with Orthogonal Experimental Design and a Metaproteomics Approach.

Li L, Zhang X, Ning Z, Mayne J, Moore JI, Butcher J, Chiang CK, Mack D, Stintzi A, Figeys D.

J Proteome Res. 2018 Jan 5;17(1):154-163. doi: 10.1021/acs.jproteome.7b00461. Epub 2017 Nov 22.

PMID:
29130306
16.

Deep Metaproteomics Approach for the Study of Human Microbiomes.

Zhang X, Chen W, Ning Z, Mayne J, Mack D, Stintzi A, Tian R, Figeys D.

Anal Chem. 2017 Sep 5;89(17):9407-9415. doi: 10.1021/acs.analchem.7b02224. Epub 2017 Aug 11.

PMID:
28749657
17.

A Toolbox for the Analysis of Peptide Signal Biogenesis.

Stührwohldt N, Schardon K, Stintzi A, Schaller A.

Mol Plant. 2017 Aug 7;10(8):1023-1025. doi: 10.1016/j.molp.2017.07.005. Epub 2017 Jul 20. No abstract available.

18.

Assessing the impact of protein extraction methods for human gut metaproteomics.

Zhang X, Li L, Mayne J, Ning Z, Stintzi A, Figeys D.

J Proteomics. 2018 May 30;180:120-127. doi: 10.1016/j.jprot.2017.07.001. Epub 2017 Jul 10.

PMID:
28705725
19.

Post carbon removal nitrifying MBBR operation at high loading and exposure to starvation conditions.

Young B, Delatolla R, Kennedy K, LaFlamme E, Stintzi A.

Bioresour Technol. 2017 Sep;239:318-325. doi: 10.1016/j.biortech.2017.05.024. Epub 2017 May 5.

PMID:
28531857
20.

From structure to function - a family portrait of plant subtilases.

Schaller A, Stintzi A, Rivas S, Serrano I, Chichkova NV, Vartapetian AB, Martínez D, Guiamét JJ, Sueldo DJ, van der Hoorn RAL, Ramírez V, Vera P.

New Phytol. 2018 May;218(3):901-915. doi: 10.1111/nph.14582. Epub 2017 May 3. Review.

PMID:
28467631
21.

NuA4 Lysine Acetyltransferase Complex Contributes to Phospholipid Homeostasis in Saccharomyces cerevisiae.

Dacquay L, Flint A, Butcher J, Salem D, Kennedy M, Kaern M, Stintzi A, Baetz K.

G3 (Bethesda). 2017 Jun 7;7(6):1799-1809. doi: 10.1534/g3.117.041053.

22.

Phytaspase-mediated precursor processing and maturation of the wound hormone systemin.

Beloshistov RE, Dreizler K, Galiullina RA, Tuzhikov AI, Serebryakova MV, Reichardt S, Shaw J, Taliansky ME, Pfannstiel J, Chichkova NV, Stintzi A, Schaller A, Vartapetian AB.

New Phytol. 2018 May;218(3):1167-1178. doi: 10.1111/nph.14568. Epub 2017 Apr 13.

PMID:
28407256
23.

Human Microbiome and Learning Healthcare Systems: Integrating Research and Precision Medicine for Inflammatory Bowel Disease.

Chuong KH, Mack DR, Stintzi A, O'Doherty KC.

OMICS. 2018 Feb;22(2):119-126. doi: 10.1089/omi.2016.0185. Epub 2017 Mar 10.

24.

A novel subtilase inhibitor in plants shows structural and functional similarities to protease propeptides.

Hohl M, Stintzi A, Schaller A.

J Biol Chem. 2017 Apr 14;292(15):6389-6401. doi: 10.1074/jbc.M117.775445. Epub 2017 Feb 21.

25.

Oxidative and nitrosative stress defences of Helicobacter and Campylobacter species that counteract mammalian immunity.

Flint A, Stintzi A, Saraiva LM.

FEMS Microbiol Rev. 2016 Nov 1;40(6):938-960. doi: 10.1093/femsre/fuw025.

26.

Rapid start-up of nitrifying MBBRs at low temperatures: nitrification, biofilm response and microbiome analysis.

Young B, Delatolla R, Abujamel T, Kennedy K, Laflamme E, Stintzi A.

Bioprocess Biosyst Eng. 2017 May;40(5):731-739. doi: 10.1007/s00449-017-1739-5. Epub 2017 Feb 6.

PMID:
28168528
27.

Low temperature MBBR nitrification: Microbiome analysis.

Young B, Delatolla R, Kennedy K, Laflamme E, Stintzi A.

Water Res. 2017 Mar 15;111:224-233. doi: 10.1016/j.watres.2016.12.050. Epub 2017 Jan 5.

PMID:
28088719
28.

Precursor processing for plant peptide hormone maturation by subtilisin-like serine proteinases.

Schardon K, Hohl M, Graff L, Pfannstiel J, Schulze W, Stintzi A, Schaller A.

Science. 2016 Dec 23;354(6319):1594-1597. doi: 10.1126/science.aai8550. Epub 2016 Dec 8.

PMID:
27940581
29.

Analyzing Prokaryotic RNA-Seq Data: A Case Study Identifying Holo-Fur Regulated Genes in Campylobacter jejuni.

Bérubé S, Butcher J, Stintzi A.

Methods Mol Biol. 2017;1512:245-256.

PMID:
27885612
30.

Using Galleria mellonella as an Infection Model for Campylobacter jejuni Pathogenesis.

Askoura M, Stintzi A.

Methods Mol Biol. 2017;1512:163-169.

PMID:
27885606
31.

Altered intestinal microbiota-host mitochondria crosstalk in new onset Crohn's disease.

Mottawea W, Chiang CK, Mühlbauer M, Starr AE, Butcher J, Abujamel T, Deeke SA, Brandel A, Zhou H, Shokralla S, Hajibabaei M, Singleton R, Benchimol EI, Jobin C, Mack DR, Figeys D, Stintzi A.

Nat Commun. 2016 Nov 23;7:13419. doi: 10.1038/ncomms13419.

32.

MetaPro-IQ: a universal metaproteomic approach to studying human and mouse gut microbiota.

Zhang X, Ning Z, Mayne J, Moore JI, Li J, Butcher J, Deeke SA, Chen R, Chiang CK, Wen M, Mack D, Stintzi A, Figeys D.

Microbiome. 2016 Jun 24;4(1):31. doi: 10.1186/s40168-016-0176-z.

33.

Mucosa-Associated Ileal Microbiota in New-Onset Pediatric Crohn's Disease.

Assa A, Butcher J, Li J, Elkadri A, Sherman PM, Muise AM, Stintzi A, Mack D.

Inflamm Bowel Dis. 2016 Jul;22(7):1533-9. doi: 10.1097/MIB.0000000000000776.

PMID:
27271491
34.

The subtilisin-like protease SBT3 contributes to insect resistance in tomato.

Meyer M, Huttenlocher F, Cedzich A, Procopio S, Stroeder J, Pau-Roblot C, Lequart-Pillon M, Pelloux J, Stintzi A, Schaller A.

J Exp Bot. 2016 Jul;67(14):4325-38. doi: 10.1093/jxb/erw220. Epub 2016 Jun 3.

35.

In Vitro Metabolic Labeling of Intestinal Microbiota for Quantitative Metaproteomics.

Zhang X, Ning Z, Mayne J, Deeke SA, Li J, Starr AE, Chen R, Singleton R, Butcher J, Mack DR, Stintzi A, Figeys D.

Anal Chem. 2016 Jun 21;88(12):6120-5. doi: 10.1021/acs.analchem.6b01412. Epub 2016 Jun 3.

PMID:
27248155
36.

Stress Responses, Adaptation, and Virulence of Bacterial Pathogens During Host Gastrointestinal Colonization.

Flint A, Butcher J, Stintzi A.

Microbiol Spectr. 2016 Apr;4(2). doi: 10.1128/microbiolspec.VMBF-0007-2015. Review.

PMID:
27227312
37.

Proteomic analysis of ascending colon biopsies from a paediatric inflammatory bowel disease inception cohort identifies protein biomarkers that differentiate Crohn's disease from UC.

Starr AE, Deeke SA, Ning Z, Chiang CK, Zhang X, Mottawea W, Singleton R, Benchimol EI, Wen M, Mack DR, Stintzi A, Figeys D.

Gut. 2017 Sep;66(9):1573-1583. doi: 10.1136/gutjnl-2015-310705. Epub 2016 May 23.

38.

Cell Death Control by Matrix Metalloproteinases.

Zimmermann D, Gomez-Barrera JA, Pasule C, Brack-Frick UB, Sieferer E, Nicholson TM, Pfannstiel J, Stintzi A, Schaller A.

Plant Physiol. 2016 Jun;171(2):1456-69. doi: 10.1104/pp.16.00513. Epub 2016 May 2.

39.

L-fucose influences chemotaxis and biofilm formation in Campylobacter jejuni.

Dwivedi R, Nothaft H, Garber J, Xin Kin L, Stahl M, Flint A, van Vliet AH, Stintzi A, Szymanski CM.

Mol Microbiol. 2016 Aug;101(4):575-89. doi: 10.1111/mmi.13409. Epub 2016 Jun 10.

40.

The Campylobacter jejuni Ferric Uptake Regulator Promotes Acid Survival and Cross-Protection against Oxidative Stress.

Askoura M, Sarvan S, Couture JF, Stintzi A.

Infect Immun. 2016 Apr 22;84(5):1287-1300. doi: 10.1128/IAI.01377-15. Print 2016 May.

41.

Meso and micro-scale response of post carbon removal nitrifying MBBR biofilm across carrier type and loading.

Young B, Banihashemi B, Forrest D, Kennedy K, Stintzi A, Delatolla R.

Water Res. 2016 Mar 15;91:235-43. doi: 10.1016/j.watres.2016.01.006. Epub 2016 Jan 6.

PMID:
26802475
42.

Pilot-scale tertiary MBBR nitrification at 1°C: characterization of ammonia removal rate, solids settleability and biofilm characteristics.

Young B, Delatolla R, Ren B, Kennedy K, Laflamme E, Stintzi A.

Environ Technol. 2016 Aug;37(16):2124-32. doi: 10.1080/09593330.2016.1143037. Epub 2016 Feb 22.

PMID:
26789700
43.

Cathelicidin Antimicrobial Peptide: A Novel Regulator of Islet Function, Islet Regeneration, and Selected Gut Bacteria.

Pound LD, Patrick C, Eberhard CE, Mottawea W, Wang GS, Abujamel T, Vandenbeek R, Stintzi A, Scott FW.

Diabetes. 2015 Dec;64(12):4135-47. doi: 10.2337/db15-0788. Epub 2015 Sep 14.

44.

Biofilm spatial organization by the emerging pathogen Campylobacter jejuni: comparison between NCTC 11168 and 81-176 strains under microaerobic and oxygen-enriched conditions.

Turonova H, Briandet R, Rodrigues R, Hernould M, Hayek N, Stintzi A, Pazlarova J, Tresse O.

Front Microbiol. 2015 Jul 13;6:709. doi: 10.3389/fmicb.2015.00709. eCollection 2015.

45.

Refined analysis of the Campylobacter jejuni iron-dependent/independent Fur- and PerR-transcriptomes.

Butcher J, Handley RA, van Vliet AH, Stintzi A.

BMC Genomics. 2015 Jul 4;16:498. doi: 10.1186/s12864-015-1661-7.

46.

Microarray transposon tracking for the mapping of conditionally essential genes in Campylobacter jejuni.

Stahl M, Stintzi A.

Methods Mol Biol. 2015;1279:1-14. doi: 10.1007/978-1-4939-2398-4_1.

PMID:
25636609
47.

Cj1386, an atypical hemin-binding protein, mediates hemin trafficking to KatA in Campylobacter jejuni.

Flint A, Stintzi A.

J Bacteriol. 2015 Mar;197(5):1002-11. doi: 10.1128/JB.02346-14. Epub 2014 Dec 29.

48.

Gut microbiota of the very-low-birth-weight infant.

Unger S, Stintzi A, Shah P, Mack D, O'Connor DL.

Pediatr Res. 2015 Jan;77(1-2):205-13. doi: 10.1038/pr.2014.162. Epub 2014 Oct 13. Review.

PMID:
25310760
49.
50.

Functional impacts of the intestinal microbiome in the pathogenesis of inflammatory bowel disease.

Li J, Butcher J, Mack D, Stintzi A.

Inflamm Bowel Dis. 2015 Jan;21(1):139-53. doi: 10.1097/MIB.0000000000000215. Review.

PMID:
25248007

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