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Items: 1 to 50 of 128

1.

The changing landscape of vancomycin-resistant Enterococcus faecium in Australia: a population-level genomic study.

Lee RS, Gonçalves da Silva A, Baines SL, Strachan J, Ballard S, Carter GP, Kwong JC, Schultz MB, Bulach DM, Seemann T, Stinear TP, Howden BP.

J Antimicrob Chemother. 2018 Sep 4. doi: 10.1093/jac/dky331. [Epub ahead of print]

PMID:
30189014
2.

Global spread of three multidrug-resistant lineages of Staphylococcus epidermidis.

Lee JYH, Monk IR, Gonçalves da Silva A, Seemann T, Chua KYL, Kearns A, Hill R, Woodford N, Bartels MD, Strommenger B, Laurent F, Dodémont M, Deplano A, Patel R, Larsen AR, Korman TM, Stinear TP, Howden BP.

Nat Microbiol. 2018 Sep 3. doi: 10.1038/s41564-018-0230-7. [Epub ahead of print]

PMID:
30177740
3.

Comprehensive antibiotic-linked mutation assessment by resistance mutation sequencing (RM-seq).

Guérillot R, Li L, Baines S, Howden B, Schultz MB, Seemann T, Monk I, Pidot SJ, Gao W, Giulieri S, Gonçalves da Silva A, D'Agata A, Tomita T, Peleg AY, Stinear TP, Howden BP.

Genome Med. 2018 Aug 31;10(1):63. doi: 10.1186/s13073-018-0572-z.

4.

Genomic analysis of multi-resistant Staphylococcus capitis associated with neonatal sepsis.

Carter GP, Ussher JE, Gonçalves Da Silva A, Baines SL, Heffernan H, Riley TV, Broadbent R, van der Linden A, Lee J, Monk IR, Stinear TP, Howden BP, Williamson DA.

Antimicrob Agents Chemother. 2018 Aug 27. pii: AAC.00898-18. doi: 10.1128/AAC.00898-18. [Epub ahead of print]

5.

Genomic exploration of sequential clinical isolates reveals a distinctive molecular signature of persistent Staphylococcus aureus bacteraemia.

Giulieri SG, Baines SL, Guerillot R, Seemann T, Gonçalves da Silva A, Schultz M, Massey RC, Holmes NE, Stinear TP, Howden BP.

Genome Med. 2018 Aug 23;10(1):65. doi: 10.1186/s13073-018-0574-x.

6.

Low incidence of recurrent Buruli ulcers in treated Australian patients living in an endemic region.

Wynne JW, Stinear TP, Athan E, Michalski WP, O'Brien DP.

PLoS Negl Trop Dis. 2018 Aug 13;12(8):e0006724. doi: 10.1371/journal.pntd.0006724. eCollection 2018 Aug.

7.

IFN-γ and IL-5 whole blood response directed against mycolactone polyketide synthase domains in patients with Mycobacterium ulcerans infection.

Loglo AD, Frimpong M, Sarpong Duah M, Sarfo F, Sarpong FN, Agbavor B, Boakye-Appiah JK, Abass KM, Dongyele M, Frempong M, Pidot S, Wansbrough-Jones M, Stinear TP, Roupie V, Huygen K, Phillips RO.

PeerJ. 2018 Jul 31;6:e5294. doi: 10.7717/peerj.5294. eCollection 2018.

8.

Increasing tolerance of hospital Enterococcus faecium to handwash alcohols.

Pidot SJ, Gao W, Buultjens AH, Monk IR, Guerillot R, Carter GP, Lee JYH, Lam MMC, Grayson ML, Ballard SA, Mahony AA, Grabsch EA, Kotsanas D, Korman TM, Coombs GW, Robinson JO, Gonçalves da Silva A, Seemann T, Howden BP, Johnson PDR, Stinear TP.

Sci Transl Med. 2018 Aug 1;10(452). pii: eaar6115. doi: 10.1126/scitranslmed.aar6115.

PMID:
30068573
9.

The First Isolation and Whole Genome Sequencing of Murray Valley Encephalitis Virus from Cerebrospinal Fluid of a Patient with Encephalitis.

Russell JS, Caly L, Kostecki R, McGuinness SL, Carter G, Bulach D, Seemann T, Stinear TP, Baird R, Catton M, Druce J.

Viruses. 2018 Jun 11;10(6). pii: E319. doi: 10.3390/v10060319.

10.

The ΦBT1 large serine recombinase catalyzes DNA integration at pseudo-attB sites in the genus Nocardia.

Herisse M, Porter JL, Guerillot R, Tomita T, Goncalves Da Silva A, Seemann T, Howden BP, Stinear TP, Pidot SJ.

PeerJ. 2018 May 4;6:e4784. doi: 10.7717/peerj.4784. eCollection 2018.

11.

Analysis of a Novel pncA Mutation for Susceptibility to Pyrazinamide Therapy.

Karmakar M, Globan M, Fyfe JAM, Stinear TP, Johnson PDR, Holmes NE, Denholm JT, Ascher DB.

Am J Respir Crit Care Med. 2018 Aug 15;198(4):541-544. doi: 10.1164/rccm.201712-2572LE. No abstract available.

PMID:
29694240
12.

Vancomycin-resistant Enterococcus faecium sequence type 796 - rapid international dissemination of a new epidemic clone.

Mahony AA, Buultjens AH, Ballard SA, Grabsch EA, Xie S, Seemann T, Stuart RL, Kotsanas D, Cheng A, Heffernan H, Roberts SA, Coombs GW, Bak N, Ferguson JK, Carter GC, Howden BP, Stinear TP, Johnson PDR.

Antimicrob Resist Infect Control. 2018 Mar 22;7:44. doi: 10.1186/s13756-018-0335-z. eCollection 2018.

13.

1,2,4-Oxadiazole antimicrobials act synergistically with daptomycin and display rapid kill kinetics against MDR Enterococcus faecium.

Carter GP, Harjani JR, Li L, Pitcher NP, Nong Y, Riley TV, Williamson DA, Stinear TP, Baell JB, Howden BP.

J Antimicrob Chemother. 2018 Jun 1;73(6):1562-1569. doi: 10.1093/jac/dky064.

PMID:
29518208
14.

Comparative Genomics Shows That Mycobacterium ulcerans Migration and Expansion Preceded the Rise of Buruli Ulcer in Southeastern Australia.

Buultjens AH, Vandelannoote K, Meehan CJ, Eddyani M, de Jong BC, Fyfe JAM, Globan M, Tobias NJ, Porter JL, Tomita T, Tay EL, Seemann T, Howden BP, Johnson PDR, Stinear TP.

Appl Environ Microbiol. 2018 Apr 2;84(8). pii: e02612-17. doi: 10.1128/AEM.02612-17. Print 2018 Apr 15.

PMID:
29439984
15.

Human blood MAIT cell subsets defined using MR1 tetramers.

Gherardin NA, Souter MN, Koay HF, Mangas KM, Seemann T, Stinear TP, Eckle SB, Berzins SP, d'Udekem Y, Konstantinov IE, Fairlie DP, Ritchie DS, Neeson PJ, Pellicci DG, Uldrich AP, McCluskey J, Godfrey DI.

Immunol Cell Biol. 2018 May;96(5):507-525. doi: 10.1111/imcb.12021. Epub 2018 Mar 25.

PMID:
29437263
16.

Convergent Evolution Driven by Rifampin Exacerbates the Global Burden of Drug-Resistant Staphylococcus aureus.

Guérillot R, Gonçalves da Silva A, Monk I, Giulieri S, Tomita T, Alison E, Porter J, Pidot S, Gao W, Peleg AY, Seemann T, Stinear TP, Howden BP.

mSphere. 2018 Jan 24;3(1). pii: e00550-17. doi: 10.1128/mSphere.00550-17. eCollection 2018 Jan-Feb.

17.

Translating genomics into practice for real-time surveillance and response to carbapenemase-producing Enterobacteriaceae: evidence from a complex multi-institutional KPC outbreak.

Kwong JC, Lane CR, Romanes F, Gonçalves da Silva A, Easton M, Cronin K, Waters MJ, Tomita T, Stevens K, Schultz MB, Baines SL, Sherry NL, Carter GP, Mu A, Sait M, Ballard SA, Seemann T, Stinear TP, Howden BP.

PeerJ. 2018 Jan 3;6:e4210. doi: 10.7717/peerj.4210. eCollection 2018.

18.

Whole-genome sequencing reveals transmission of gonococcal antibiotic resistance among men who have sex with men: an observational study.

Kwong JC, Chow EPF, Stevens K, Stinear TP, Seemann T, Fairley CK, Chen MY, Howden BP.

Sex Transm Infect. 2018 Mar;94(2):151-157. doi: 10.1136/sextrans-2017-053287. Epub 2017 Dec 15.

19.

Topical Antibiotic Use Coselects for the Carriage of Mobile Genetic Elements Conferring Resistance to Unrelated Antimicrobials in Staphylococcus aureus.

Carter GP, Schultz MB, Baines SL, Gonçalves da Silva A, Heffernan H, Tiong A, Pham PH, Monk IR, Stinear TP, Howden BP, Williamson DA.

Antimicrob Agents Chemother. 2018 Jan 25;62(2). pii: e02000-17. doi: 10.1128/AAC.02000-17. Print 2018 Feb.

20.

Evolution of virulence in Enterococcus faecium, a hospital-adapted opportunistic pathogen.

Gao W, Howden BP, Stinear TP.

Curr Opin Microbiol. 2018 Feb;41:76-82. doi: 10.1016/j.mib.2017.11.030. Epub 2017 Dec 9. Review.

PMID:
29227922
21.

Genomic epidemiology and antimicrobial resistance of Neisseria gonorrhoeae in New Zealand.

Lee RS, Seemann T, Heffernan H, Kwong JC, Gonçalves da Silva A, Carter GP, Woodhouse R, Dyet KH, Bulach DM, Stinear TP, Howden BP, Williamson DA.

J Antimicrob Chemother. 2018 Feb 1;73(2):353-364. doi: 10.1093/jac/dkx405.

22.

Methicillin Resistant Staphylococcus aureus Transmission in a Ghanaian Burn Unit: The Importance of Active Surveillance in Resource-Limited Settings.

Amissah NA, Buultjens AH, Ablordey A, van Dam L, Opoku-Ware A, Baines SL, Bulach D, Tetteh CS, Prah I, van der Werf TS, Friedrich AW, Seemann T, van Dijl JM, Stienstra Y, Stinear TP, Rossen JW.

Front Microbiol. 2017 Oct 6;8:1906. doi: 10.3389/fmicb.2017.01906. eCollection 2017.

23.

Natural product diversity associated with the nematode symbionts Photorhabdus and Xenorhabdus.

Tobias NJ, Wolff H, Djahanschiri B, Grundmann F, Kronenwerth M, Shi YM, Simonyi S, Grün P, Shapiro-Ilan D, Pidot SJ, Stinear TP, Ebersberger I, Bode HB.

Nat Microbiol. 2017 Dec;2(12):1676-1685. doi: 10.1038/s41564-017-0039-9. Epub 2017 Oct 9.

PMID:
28993611
24.

A Supervised Statistical Learning Approach for Accurate Legionella pneumophila Source Attribution during Outbreaks.

Buultjens AH, Chua KYL, Baines SL, Kwong J, Gao W, Cutcher Z, Adcock S, Ballard S, Schultz MB, Tomita T, Subasinghe N, Carter GP, Pidot SJ, Franklin L, Seemann T, Gonçalves Da Silva A, Howden BP, Stinear TP.

Appl Environ Microbiol. 2017 Oct 17;83(21). pii: e01482-17. doi: 10.1128/AEM.01482-17. Print 2017 Nov 1.

25.

Functional analysis of the first complete genome sequence of a multidrug resistant sequence type 2 Staphylococcus epidermidis.

Lee JYH, Monk IR, Pidot SJ, Singh S, Chua KYL, Seemann T, Stinear TP, Howden BP.

Microb Genom. 2016 Sep 20;2(9):e000077. doi: 10.1099/mgen.0.000077. eCollection 2016 Sep.

26.

Bacterial membrane vesicles transport their DNA cargo into host cells.

Bitto NJ, Chapman R, Pidot S, Costin A, Lo C, Choi J, D'Cruze T, Reynolds EC, Dashper SG, Turnbull L, Whitchurch CB, Stinear TP, Stacey KJ, Ferrero RL.

Sci Rep. 2017 Aug 1;7(1):7072. doi: 10.1038/s41598-017-07288-4.

27.

Emergence of multidrug resistance in locally-acquired human infections with Salmonella Typhimurium in Australia owing to a new clade harbouring blaCTX-M-9.

Sparham SJ, Kwong JC, Valcanis M, Easton M, Trott DJ, Seemann T, Stinear TP, Howden BP.

Int J Antimicrob Agents. 2017 Jul;50(1):101-105. doi: 10.1016/j.ijantimicag.2017.02.014. Epub 2017 May 2.

PMID:
28476613
28.

Exposure Risk for Infection and Lack of Human-to-Human Transmission of Mycobacterium ulcerans Disease, Australia.

O'Brien DP, Wynne JW, Buultjens AH, Michalski WP, Stinear TP, Friedman ND, Hughes A, Athan E.

Emerg Infect Dis. 2017 May;23(5):837-840. doi: 10.3201/eid2305.160809.

29.

Mycobacterium ulcerans low infectious dose and mechanical transmission support insect bites and puncturing injuries in the spread of Buruli ulcer.

Wallace JR, Mangas KM, Porter JL, Marcsisin R, Pidot SJ, Howden B, Omansen TF, Zeng W, Axford JK, Johnson PDR, Stinear TP.

PLoS Negl Trop Dis. 2017 Apr 14;11(4):e0005553. doi: 10.1371/journal.pntd.0005553. eCollection 2017 Apr.

30.

Vancomycin-intermediate Staphylococcus aureus isolates are attenuated for virulence when compared with susceptible progenitors.

Cameron DR, Lin YH, Trouillet-Assant S, Tafani V, Kostoulias X, Mouhtouris E, Skinner N, Visvanathan K, Baines SL, Howden B, Monk IR, Laurent F, Stinear TP, Howden BP, Peleg AY.

Clin Microbiol Infect. 2017 Oct;23(10):767-773. doi: 10.1016/j.cmi.2017.03.027. Epub 2017 Apr 7.

31.

Target-Specific Assay for Rapid and Quantitative Detection of Mycobacterium chimaera DNA.

Zozaya-Valdés E, Porter JL, Coventry J, Fyfe JAM, Carter GP, Gonçalves da Silva A, Schultz MB, Seemann T, Johnson PDR, Stewardson AJ, Bastian I, Roberts SA, Howden BP, Williamson DA, Stinear TP.

J Clin Microbiol. 2017 Jun;55(6):1847-1856. doi: 10.1128/JCM.00197-17. Epub 2017 Apr 5.

32.

Structure and Biosynthesis of Isatropolones, Bioactive Amine-Scavenging Fluorescent Natural Products from Streptomyces Gö66.

Cai X, Shi YM, Pöhlmann N, Revermann O, Bahner I, Pidot SJ, Wesche F, Lackner H, Büchel C, Kaiser M, Richter C, Schwalbe H, Stinear TP, Zeeck A, Bode HB.

Angew Chem Int Ed Engl. 2017 Apr 24;56(18):4945-4949. doi: 10.1002/anie.201701223. Epub 2017 Mar 30.

PMID:
28371116
33.

A phylogenomic framework for assessing the global emergence and evolution of clonal complex 398 methicillin-resistant Staphylococcus aureus.

Gonçalves da Silva A, Baines SL, Carter GP, Heffernan H, French NP, Ren X, Seemann T, Bulach D, Kwong J, Stinear TP, Howden BP, Williamson DA.

Microb Genom. 2017 Jan 31;3(1):e000105. doi: 10.1099/mgen.0.000105. eCollection 2017 Jan.

34.

NGMASTER:in silico multi-antigen sequence typing for Neisseria gonorrhoeae.

Kwong JC, Gonçalves da Silva A, Dyet K, Williamson DA, Stinear TP, Howden BP, Seemann T.

Microb Genom. 2016 Aug 25;2(8):e000076. doi: 10.1099/mgen.0.000076. eCollection 2016 Aug.

35.

Genomic Insights into a Sustained National Outbreak of Yersinia pseudotuberculosis.

Williamson DA, Baines SL, Carter GP, da Silva AG, Ren X, Sherwood J, Dufour M, Schultz MB, French NP, Seemann T, Stinear TP, Howden BP.

Genome Biol Evol. 2016 Dec 1;8(12):3806-3814. doi: 10.1093/gbe/evw285.

36.

Correspondence: Spontaneous secondary mutations confound analysis of the essential two-component system WalKR in Staphylococcus aureus.

Monk IR, Howden BP, Seemann T, Stinear TP.

Nat Commun. 2017 Feb 6;8:14403. doi: 10.1038/ncomms14403. No abstract available.

37.

Evolutionary origins of the emergent ST796 clone of vancomycin resistant Enterococcus faecium.

Buultjens AH, Lam MM, Ballard S, Monk IR, Mahony AA, Grabsch EA, Grayson ML, Pang S, Coombs GW, Robinson JO, Seemann T, Johnson PD, Howden BP, Stinear TP.

PeerJ. 2017 Jan 24;5:e2916. doi: 10.7717/peerj.2916. eCollection 2017.

38.

Multiple Introductions and Recent Spread of the Emerging Human Pathogen Mycobacterium ulcerans across Africa.

Vandelannoote K, Meehan CJ, Eddyani M, Affolabi D, Phanzu DM, Eyangoh S, Jordaens K, Portaels F, Mangas K, Seemann T, Marsollier L, Marion E, Chauty A, Landier J, Fontanet A, Leirs H, Stinear TP, de Jong BC.

Genome Biol Evol. 2017 Mar 1;9(3):414-426. doi: 10.1093/gbe/evx003.

39.

Comment on: Benchmarking of methods for identification of antimicrobial resistance genes in bacterial whole genome data.

Kwong JC, Schultz MB, Williamson DA, Stinear TP, Seemann T, Howden BP.

J Antimicrob Chemother. 2017 Feb;72(2):635-636. doi: 10.1093/jac/dkw473. Epub 2016 Dec 20. No abstract available.

PMID:
27999008
40.

Leprosy in red squirrels.

Stinear TP, Brosch R.

Science. 2016 Nov 11;354(6313):702-703. No abstract available.

PMID:
27846589
41.

Use of bacterial whole-genome sequencing to understand and improve the management of invasive Staphylococcus aureus infections.

Giulieri SG, Holmes NE, Stinear TP, Howden BP.

Expert Rev Anti Infect Ther. 2016 Nov;14(11):1023-1036. Epub 2016 Sep 21. Review.

PMID:
27626511
42.

pks5-recombination-mediated surface remodelling in Mycobacterium tuberculosis emergence.

Boritsch EC, Frigui W, Cascioferro A, Malaga W, Etienne G, Laval F, Pawlik A, Le Chevalier F, Orgeur M, Ma L, Bouchier C, Stinear TP, Supply P, Majlessi L, Daffé M, Guilhot C, Brosch R.

Nat Microbiol. 2016 Jan 27;1:15019. doi: 10.1038/nmicrobiol.2015.19.

PMID:
27571976
43.

Possible healthcare-associated transmission as a cause of secondary infection and population structure of Staphylococcus aureus isolates from two wound treatment centres in Ghana.

Kpeli G, Darko Otchere I, Lamelas A, Buultjens AL, Bulach D, Baines SL, Seemann T, Giulieri S, Nakobu Z, Aboagye SY, Owusu-Mireku E, Pluschke G, Stinear TP, Yeboah-Manu D.

New Microbes New Infect. 2016 Jul 12;13:92-101. doi: 10.1016/j.nmni.2016.07.001. eCollection 2016 Sep.

44.

Emergence of endemic MLST non-typeable vancomycin-resistant Enterococcus faecium.

Carter GP, Buultjens AH, Ballard SA, Baines SL, Tomita T, Strachan J, Johnson PD, Ferguson JK, Seemann T, Stinear TP, Howden BP.

J Antimicrob Chemother. 2016 Dec;71(12):3367-3371. Epub 2016 Aug 15.

PMID:
27530751
45.

Key experimental evidence of chromosomal DNA transfer among selected tuberculosis-causing mycobacteria.

Boritsch EC, Khanna V, Pawlik A, Honoré N, Navas VH, Ma L, Bouchier C, Seemann T, Supply P, Stinear TP, Brosch R.

Proc Natl Acad Sci U S A. 2016 Aug 30;113(35):9876-81. doi: 10.1073/pnas.1604921113. Epub 2016 Aug 15.

46.

Genome comparisons provide insights into the role of secondary metabolites in the pathogenic phase of the Photorhabdus life cycle.

Tobias NJ, Mishra B, Gupta DK, Sharma R, Thines M, Stinear TP, Bode HB.

BMC Genomics. 2016 Aug 3;17:537. doi: 10.1186/s12864-016-2862-4.

47.

Sharing Is Caring: International Sharing of Data Enhances Genomic Surveillance of Listeria monocytogenes.

Kwong JC, Stafford R, Strain E, Stinear TP, Seemann T, Howden BP.

Clin Infect Dis. 2016 Sep 15;63(6):846-8. doi: 10.1093/cid/ciw359. Epub 2016 Jun 9. No abstract available.

PMID:
27282712
48.

Snapshot fecal survey of domestic animals in rural Ghana for Mycobacterium ulcerans.

Tobias NJ, Ammisah NA, Ahortor EK, Wallace JR, Ablordey A, Stinear TP.

PeerJ. 2016 Jun 1;4:e2065. doi: 10.7717/peerj.2065. eCollection 2016.

49.

Erratum for Monk et al., Complete Bypass of Restriction Systems for Major Staphylococcus aureus Lineages.

Monk IR, Tree JJ, Howden BP, Stinear TP, Foster TJ.

MBio. 2016 Mar 1;7(2):e00171. doi: 10.1128/mBio.00171-16. No abstract available.

50.

Rapid Emergence and Evolution of Staphylococcus aureus Clones Harboring fusC-Containing Staphylococcal Cassette Chromosome Elements.

Baines SL, Howden BP, Heffernan H, Stinear TP, Carter GP, Seemann T, Kwong JC, Ritchie SR, Williamson DA.

Antimicrob Agents Chemother. 2016 Mar 25;60(4):2359-65. doi: 10.1128/AAC.03020-15. Print 2016 Apr.

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