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Items: 1 to 50 of 192

1.

Effects of Lyse-It on endonuclease fragmentation, function and activity.

Santaus TM, Zhang F, Li S, Stine OC, Geddes CD.

PLoS One. 2019 Sep 30;14(9):e0223008. doi: 10.1371/journal.pone.0223008. eCollection 2019.

2.

A comparison of Lyse-It to other cellular sample preparation, bacterial lysing, and DNA fragmentation technologies.

Santaus TM, Li S, Saha L, Chen WH, Bhagat S, Stine OC, Geddes CD.

PLoS One. 2019 Jul 23;14(7):e0220102. doi: 10.1371/journal.pone.0220102. eCollection 2019.

3.

Coli Surface Antigen 26 Acts as an Adherence Determinant of Enterotoxigenic Escherichia coli and Is Cross-Recognized by Anti-CS20 Antibodies.

Cádiz L, Torres A, Valdés R, Vera G, Gutiérrez D, Levine MM, Montero DA, O'Ryan M, Rasko DA, Stine OC, Vidal R, Del Canto F.

Front Microbiol. 2018 Oct 16;9:2463. doi: 10.3389/fmicb.2018.02463. eCollection 2018.

4.

Genetics of the thrombomodulin-endothelial cell protein C receptor system and the risk of early-onset ischemic stroke.

Cole JW, Xu H, Ryan K, Jaworek T, Dueker N, McArdle P, Gaynor B, Cheng YC, O'Connell J, Bevan S, Malik R, Ahmed NU, Amouyel P, Anjum S, Bis JC, Crosslin D, Danesh J, Engelter ST, Fornage M, Frossard P, Gieger C, Giese AK, Grond-Ginsbach C, Ho WK, Holliday E, Hopewell J, Hussain M, Iqbal W, Jabeen S, Jannes J, Kamal A, Kamatani Y, Kanse S, Kloss M, Lathrop M, Leys D, Lindgren A, Longstreth WT Jr, Mahmood K, Meisinger C, Metso TM, Mosley T Jr, Müller-Nurasyid M, Norrving B, Parati E, Peters A, Pezzini A, Quereshi I, Rasheed A, Rauf A, Salam T, Shen J, Słowik A, Stanne T, Strauch K, Tatlisumak T, Thijs VN, Tiedt S, Traylor M, Waldenberger M, Walters M, Zhao W, Boncoraglio G, Debette S, Jern C, Levi C, Markus H, Meschia J, Rolfs A, Rothwell P, Saleheen D, Seshadri S, Sharma P, Sudlow C, Worrall B; METASTROKE Consortium of the ISGC; WTCCC-2 Consortium, Stine OC, Kittner SJ, Mitchell BD.

PLoS One. 2018 Nov 1;13(11):e0206554. doi: 10.1371/journal.pone.0206554. eCollection 2018.

5.

Detection of Uncommon Enteric Bacterial Pathogens from Acute Diarrheal Specimens Using SYBR-Green Real Time PCR.

Chowdhury G, Stine OC, Rajendran K, Mukhopadhyay AK, Okamoto K, Ramamurthy T.

Jpn J Infect Dis. 2019 Mar 25;72(2):88-93. doi: 10.7883/yoken.JJID.2018.142. Epub 2018 Oct 31.

6.

A prospective cohort study comparing household contact and water Vibrio cholerae isolates in households of cholera patients in rural Bangladesh.

George CM, Hasan K, Monira S, Rahman Z, Saif-Ur-Rahman KM, Rashid MU, Zohura F, Parvin T, Islam Bhuyian MS, Mahmud MT, Li S, Perin J, Morgan C, Mustafiz M, Sack RB, Sack DA, Stine OC, Alam M.

PLoS Negl Trop Dis. 2018 Jul 27;12(7):e0006641. doi: 10.1371/journal.pntd.0006641. eCollection 2018 Jul.

7.

Rapid sample preparation with Lyse-It® for Listeria monocytogenes and Vibrio cholerae.

Santaus TM, Li S, Ladd P, Harvey A, Cole S, Stine OC, Geddes CD.

PLoS One. 2018 Jul 25;13(7):e0201070. doi: 10.1371/journal.pone.0201070. eCollection 2018.

8.

Molecular characterization of Vibrio cholerae responsible for cholera epidemics in Uganda by PCR, MLVA and WGS.

Bwire G, Sack DA, Almeida M, Li S, Voeglein JB, Debes AK, Kagirita A, Buyinza AW, Orach CG, Stine OC.

PLoS Negl Trop Dis. 2018 Jun 4;12(6):e0006492. doi: 10.1371/journal.pntd.0006492. eCollection 2018 Jun.

9.

Meta-analysis of the lung microbiota in pulmonary tuberculosis.

Hong BY, Paulson JN, Stine OC, Weinstock GM, Cervantes JL.

Tuberculosis (Edinb). 2018 Mar;109:102-108. doi: 10.1016/j.tube.2018.02.006. Epub 2018 Feb 22.

PMID:
29559113
10.

Genetic relatedness of Vibrio cholerae isolates within and between households during outbreaks in Dhaka, Bangladesh.

George CM, Rashid M, Almeida M, Saif-Ur-Rahman KM, Monira S, Bhuyian MSI, Hasan K, Mahmud TT, Li S, Brubaker J, Perin J, Rahman Z, Mustafiz M, Sack DA, Sack RB, Alam M, Stine OC.

BMC Genomics. 2017 Nov 25;18(1):903. doi: 10.1186/s12864-017-4254-9.

11.

Enteric Infections in Young Children are Associated with Environmental Enteropathy and Impaired Growth.

George CM, Burrowes V, Perin J, Oldja L, Biswas S, Sack D, Ahmed S, Haque R, Bhuiyan NA, Parvin T, Bhuyian SI, Akter M, Li S, Natarajan G, Shahnaij M, Faruque AG, Stine OC.

Trop Med Int Health. 2018 Jan;23(1):26-33. doi: 10.1111/tmi.13002. Epub 2017 Dec 11.

12.

Direct Detection of Shigella in Stool Specimens by Use of a Metagenomic Approach.

Liu J, Almeida M, Kabir F, Shakoor S, Qureshi S, Zaidi A, Li S, Tamboura B, Sow SO, Mandomando I, Alonso PL, Ramamurthy T, Sur D, Kotloff K, Nataro J, Levine MM, Stine OC, Houpt E.

J Clin Microbiol. 2018 Jan 24;56(2). pii: e01374-17. doi: 10.1128/JCM.01374-17. Print 2018 Feb.

13.

Minimal genetic change in Vibrio cholerae in Mozambique over time: Multilocus variable number tandem repeat analysis and whole genome sequencing.

Garrine M, Mandomando I, Vubil D, Nhampossa T, Acacio S, Li S, Paulson JN, Almeida M, Domman D, Thomson NR, Alonso P, Stine OC.

PLoS Negl Trop Dis. 2017 Jun 16;11(6):e0005671. doi: 10.1371/journal.pntd.0005671. eCollection 2017 Jun.

14.

Genetic Characterization of Vibrio cholerae O1 isolates from outbreaks between 2011 and 2015 in Tanzania.

Kachwamba Y, Mohammed AA, Lukupulo H, Urio L, Majigo M, Mosha F, Matonya M, Kishimba R, Mghamba J, Lusekelo J, Nyanga S, Almeida M, Li S, Domman D, Massele SY, Stine OC.

BMC Infect Dis. 2017 Feb 20;17(1):157. doi: 10.1186/s12879-017-2252-9.

15.

Chaperone-Usher Pili Loci of Colonization Factor-Negative Human Enterotoxigenic Escherichia coli.

Del Canto F, O'Ryan M, Pardo M, Torres A, Gutiérrez D, Cádiz L, Valdés R, Mansilla A, Martínez R, Hernández D, Caro B, Levine MM, Rasko DA, Hill CM, Pop M, Stine OC, Vidal R.

Front Cell Infect Microbiol. 2017 Jan 6;6:200. doi: 10.3389/fcimb.2016.00200. eCollection 2016.

16.

Analysis of Aichi virus and Saffold virus association with pediatric acute gastroenteritis.

Li LL, Liu N, Yu JM, Ao YY, Li S, Stine OC, Duan ZJ.

J Clin Virol. 2017 Feb;87:37-42. doi: 10.1016/j.jcv.2016.12.003. Epub 2016 Dec 12.

PMID:
27992789
17.

Comparison of molecular typing methods for the analyses of Acinetobacter baumannii from ICU patients.

Johnson JK, Robinson GL, Zhao L, Harris AD, Stine OC, Thom KA.

Diagn Microbiol Infect Dis. 2016 Dec;86(4):345-350. doi: 10.1016/j.diagmicrobio.2016.08.024. Epub 2016 Aug 27.

18.

Individual-specific changes in the human gut microbiota after challenge with enterotoxigenic Escherichia coli and subsequent ciprofloxacin treatment.

Pop M, Paulson JN, Chakraborty S, Astrovskaya I, Lindsay BR, Li S, Bravo HC, Harro C, Parkhill J, Walker AW, Walker RI, Sack DA, Stine OC.

BMC Genomics. 2016 Jun 8;17:440. doi: 10.1186/s12864-016-2777-0.

19.

Comparison of inferred relatedness based on multilocus variable-number tandem-repeat analysis and whole genome sequencing of Vibrio cholerae O1.

Rashid MU, Almeida M, Azman AS, Lindsay BR, Sack DA, Colwell RR, Huq A, Morris JG Jr, Alam M, Stine OC.

FEMS Microbiol Lett. 2016 Jun;363(12). pii: fnw116. doi: 10.1093/femsle/fnw116. Epub 2016 Apr 28.

20.

Correction: Evaluation in Cameroon of a Novel, Simplified Methodology to Assist Molecular Microbiological Analysis of V. cholerae in Resource-Limited Settings.

Debes AK, Ateudjieu J, Guenou E, Lopez AL, Bugayong MP, Retiban PJ, Garrine M, Mandomando I, Li S, Stine OC, Sack DA.

PLoS Negl Trop Dis. 2016 Mar 21;10(3):e0004573. doi: 10.1371/journal.pntd.0004573. eCollection 2016 Mar. No abstract available.

21.

Correction: Evaluation in Cameroon of a Novel, Simplified Methodology to Assist Molecular Microbiological Analysis of V. cholerae in Resource-Limited Settings.

Debes AK, Ateudjieu J, Guenou E, Lopez AL, Bugayong MP, Retiban PJ, Garrine M, Mandomando I, Li S, Stine OC, Sack DA.

PLoS Negl Trop Dis. 2016 Mar 8;10(3):e0004537. doi: 10.1371/journal.pntd.0004537. eCollection 2016 Mar. No abstract available.

22.

Transmission Clusters of Methicillin-Resistant Staphylococcus Aureus in Long-Term Care Facilities Based on Whole-Genome Sequencing.

Stine OC, Burrowes S, David S, Johnson JK, Roghmann MC.

Infect Control Hosp Epidemiol. 2016 Jun;37(6):685-91. doi: 10.1017/ice.2016.41. Epub 2016 Mar 4.

PMID:
26941060
23.

In Response.

Nataro J, Stine OC.

Am J Trop Med Hyg. 2016 Feb;94(2):482. doi: 10.4269/ajtmh.15-0777b. No abstract available.

24.

Evaluation in Cameroon of a Novel, Simplified Methodology to Assist Molecular Microbiological Analysis of V. cholerae in Resource-Limited Settings.

Debes AK, Ateudjieu J, Guenou E, Lopez AL, Bugayong MP, Retiban PJ, Garrine M, Mandomando I, Li S, Stine OC, Sack DA.

PLoS Negl Trop Dis. 2016 Jan 6;10(1):e0004307. doi: 10.1371/journal.pntd.0004307. eCollection 2016 Jan. Erratum in: PLoS Negl Trop Dis. 2016 Mar 08;10(3):e0004537. PLoS Negl Trop Dis. 2016 Mar;10(3):e0004573. Guenou, Etiene [corrected to Guenou, Etienne].

25.

Aetiology of diarrhoeal disease and evaluation of viral-bacterial coinfection in children under 5 years old in China: a matched case-control study.

Li LL, Liu N, Humphries EM, Yu JM, Li S, Lindsay BR, Stine OC, Duan ZJ.

Clin Microbiol Infect. 2016 Apr;22(4):381.e9-381.e16. doi: 10.1016/j.cmi.2015.12.018. Epub 2015 Dec 25.

26.

Shigella Infections in Household Contacts of Pediatric Shigellosis Patients in Rural Bangladesh.

George CM, Ahmed S, Talukder KA, Azmi IJ, Perin J, Sack RB, Sack DA, Stine OC, Oldja L, Shahnaij M, Chakraborty S, Parvin T, Bhuyian SI, Bouwer E, Zhang X, Hasan TN, Luna SJ, Akter F, Faruque AS.

Emerg Infect Dis. 2015 Nov;21(11):2006-13. doi: 10.3201/eid2111.150333.

27.

Association Between Shigella Infection and Diarrhea Varies Based on Location and Age of Children.

Lindsay B, Saha D, Sanogo D, Das SK, Omore R, Farag TH, Nasrin D, Li S, Panchalingam S, Levine MM, Kotloff K, Nataro JP, Magder L, Hungerford L, Faruque AS, Oundo J, Hossain MA, Adeyemi M, Stine OC.

Am J Trop Med Hyg. 2015 Nov;93(5):918-24. doi: 10.4269/ajtmh.14-0319. Epub 2015 Aug 31.

28.

Genetic relatedness of selected clinical and environmental non-O1/O139 Vibrio cholerae.

Aydanian A, Tang L, Chen Y, Morris JG Jr, Olsen P, Johnson JA, Nair GB, Stine OC.

Int J Infect Dis. 2015 Aug;37:152-8. doi: 10.1016/j.ijid.2015.07.001. Epub 2015 Jul 8.

29.

Prevalence of classic, MLB-clade and VA-clade Astroviruses in Kenya and The Gambia.

Meyer CT, Bauer IK, Antonio M, Adeyemi M, Saha D, Oundo JO, Ochieng JB, Omore R, Stine OC, Wang D, Holtz LR.

Virol J. 2015 May 15;12:78. doi: 10.1186/s12985-015-0299-z.

30.

Bowel preparation for colonoscopy: relevant for the gut's microbiota?

Mai V, Stine OC.

Gut. 2015 Oct;64(10):1504-5. doi: 10.1136/gutjnl-2014-308937. Epub 2015 Feb 13. No abstract available.

PMID:
25681401
31.

Microbiota that affect risk for shigellosis in children in low-income countries.

Lindsay B, Oundo J, Hossain MA, Antonio M, Tamboura B, Walker AW, Paulson JN, Parkhill J, Omore R, Faruque AS, Das SK, Ikumapayi UN, Adeyemi M, Sanogo D, Saha D, Sow S, Farag TH, Nasrin D, Li S, Panchalingam S, Levine MM, Kotloff K, Magder LS, Hungerford L, Sommerfelt H, Pop M, Nataro JP, Stine OC.

Emerg Infect Dis. 2015 Feb;21(2):242-50. doi: 10.3201/eid2101.140795.

32.

Serratia marcescens is injurious to intestinal epithelial cells.

Ochieng JB, Boisen N, Lindsay B, Santiago A, Ouma C, Ombok M, Fields B, Stine OC, Nataro JP.

Gut Microbes. 2014;5(6):729-36. doi: 10.4161/19490976.2014.972223.

34.

Geographic variation in the eukaryotic virome of human diarrhea.

Holtz LR, Cao S, Zhao G, Bauer IK, Denno DM, Klein EJ, Antonio M, Stine OC, Snelling TL, Kirkwood CD, Wang D.

Virology. 2014 Nov;468-470:556-564. doi: 10.1016/j.virol.2014.09.012. Epub 2014 Sep 28.

35.

Diarrhea in young children from low-income countries leads to large-scale alterations in intestinal microbiota composition.

Pop M, Walker AW, Paulson J, Lindsay B, Antonio M, Hossain MA, Oundo J, Tamboura B, Mai V, Astrovskaya I, Corrada Bravo H, Rance R, Stares M, Levine MM, Panchalingam S, Kotloff K, Ikumapayi UN, Ebruke C, Adeyemi M, Ahmed D, Ahmed F, Alam MT, Amin R, Siddiqui S, Ochieng JB, Ouma E, Juma J, Mailu E, Omore R, Morris JG, Breiman RF, Saha D, Parkhill J, Nataro JP, Stine OC.

Genome Biol. 2014 Jun 27;15(6):R76. doi: 10.1186/gb-2014-15-6-r76.

36.

Discovery of rosavirus 2, a novel variant of a rodent-associated picornavirus, in children from The Gambia.

Lim ES, Cao S, Holtz LR, Antonio M, Stine OC, Wang D.

Virology. 2014 Apr;454-455:25-33. doi: 10.1016/j.virol.2014.01.018. Epub 2014 Feb 20.

37.

Prothrombin G20210A mutation is associated with young-onset stroke: the genetics of early-onset stroke study and meta-analysis.

Jiang B, Ryan KA, Hamedani A, Cheng Y, Sparks MJ, Koontz D, Bean CJ, Gallagher M, Hooper WC, McArdle PF, O'Connell JR, Stine OC, Wozniak MA, Stern BJ, Mitchell BD, Kittner SJ, Cole JW.

Stroke. 2014 Apr;45(4):961-7. doi: 10.1161/STROKEAHA.113.004063. Epub 2014 Mar 11.

38.

Circulation and transmission of clones of Vibrio cholerae during cholera outbreaks.

Stine OC, Morris JG Jr.

Curr Top Microbiol Immunol. 2014;379:181-93. doi: 10.1007/82_2013_360. Review.

39.

Genetic variation of Vibrio cholerae during outbreaks, Bangladesh, 2010-2011.

Rashed SM, Azman AS, Alam M, Li S, Sack DA, Morris JG Jr, Longini I, Siddique AK, Iqbal A, Huq A, Colwell RR, Sack RB, Stine OC.

Emerg Infect Dis. 2014 Jan;20(1):54-60. doi: 10.3201/eid2001.130796.

40.

Molecular epidemiology of Staphyloccocus aureus colonization in the Old Order of Amish of Lancaster County, Pennsylvania, USA.

Roghmann MC, Longinaker N, Croft L, Johnson JK, Lydecker AD, Stine OC.

Epidemiol Infect. 2014 Aug;142(8):1722-6. doi: 10.1017/S0950268813002872. Epub 2013 Nov 11.

41.

Differential abundance analysis for microbial marker-gene surveys.

Paulson JN, Stine OC, Bravo HC, Pop M.

Nat Methods. 2013 Dec;10(12):1200-2. doi: 10.1038/nmeth.2658. Epub 2013 Sep 29.

42.

Vibrio cholerae O1 El Tor and O139 Bengal strains carrying ctxB(ET), Bangladesh.

Rashed SM, Iqbal A, Mannan SB, Islam T, Rashid MU, Johura FT, Watanabe H, Hasan NA, Huq A, Stine OC, Sack RB, Colwell RR, Alam M.

Emerg Infect Dis. 2013 Oct;19(10):1713-5. doi: 10.3201/eid1910.130626. No abstract available.

43.

Survey of culture, goldengate assay, universal biosensor assay, and 16S rRNA Gene sequencing as alternative methods of bacterial pathogen detection.

Lindsay B, Pop M, Antonio M, Walker AW, Mai V, Ahmed D, Oundo J, Tamboura B, Panchalingam S, Levine MM, Kotloff K, Li S, Magder LS, Paulson JN, Liu B, Ikumapayi U, Ebruke C, Dione M, Adeyemi M, Rance R, Stares MD, Ukhanova M, Barnes B, Lewis I, Ahmed F, Alam MT, Amin R, Siddiqui S, Ochieng JB, Ouma E, Juma J, Mailu E, Omore R, O'Reilly CE, Hannis J, Manalili S, Deleon J, Yasuda I, Blyn L, Ranken R, Li F, Housley R, Ecker DJ, Hossain MA, Breiman RF, Morris JG, McDaniel TK, Parkhill J, Saha D, Sampath R, Stine OC, Nataro JP.

J Clin Microbiol. 2013 Oct;51(10):3263-9. doi: 10.1128/JCM.01342-13. Epub 2013 Jul 24.

44.

Quantitative PCR for detection of Shigella improves ascertainment of Shigella burden in children with moderate-to-severe diarrhea in low-income countries.

Lindsay B, Ochieng JB, Ikumapayi UN, Toure A, Ahmed D, Li S, Panchalingam S, Levine MM, Kotloff K, Rasko DA, Morris CR, Juma J, Fields BS, Dione M, Malle D, Becker SM, Houpt ER, Nataro JP, Sommerfelt H, Pop M, Oundo J, Antonio M, Hossain A, Tamboura B, Stine OC.

J Clin Microbiol. 2013 Jun;51(6):1740-6. doi: 10.1128/JCM.02713-12. Epub 2013 Mar 27.

45.

Niche partition of Bacteriovorax operational taxonomic units along salinity and temporal gradients in the Chesapeake Bay reveals distinct estuarine strains.

Pineiro S, Chauhan A, Berhane TK, Athar R, Zheng G, Wang C, Dickerson T, Liang X, Lymperopoulou DS, Chen H, Christman M, Louime C, Babiker W, Stine OC, Williams HN.

Microb Ecol. 2013 Apr;65(3):652-60. doi: 10.1007/s00248-013-0186-3. Epub 2013 Mar 6.

PMID:
23463183
46.

Polymorphisms in migraine-associated gene, atp1a2, and ischemic stroke risk in a biracial population: the genetics of early onset stroke study.

Harriott AM, Dueker N, Cheng YC, Ryan KA, O'Connell JR, Stine OC, McArdle PF, Wozniak MA, Stern BJ, Mitchell BD, Kittner SJ, Cole JW.

Springerplus. 2013 Dec;2(1):46. doi: 10.1186/2193-1801-2-46. Epub 2013 Feb 11.

47.

Discovery of STL polyomavirus, a polyomavirus of ancestral recombinant origin that encodes a unique T antigen by alternative splicing.

Lim ES, Reyes A, Antonio M, Saha D, Ikumapayi UN, Adeyemi M, Stine OC, Skelton R, Brennan DC, Mkakosya RS, Manary MJ, Gordon JI, Wang D.

Virology. 2013 Feb 20;436(2):295-303. doi: 10.1016/j.virol.2012.12.005. Epub 2012 Dec 29. Erratum in: Virology. 2013 May 10;439(2):163-4.

48.

A small predatory core genome in the divergent marine Bacteriovorax marinus SJ and the terrestrial Bdellovibrio bacteriovorus.

Crossman LC, Chen H, Cerdeño-Tárraga AM, Brooks K, Quail MA, Pineiro SA, Hobley L, Sockett RE, Bentley SD, Parkhill J, Williams HN, Stine OC.

ISME J. 2013 Jan;7(1):148-60. doi: 10.1038/ismej.2012.90. Epub 2012 Sep 6.

49.

Deep sequencing of the oral microbiome reveals signatures of periodontal disease.

Liu B, Faller LL, Klitgord N, Mazumdar V, Ghodsi M, Sommer DD, Gibbons TR, Treangen TJ, Chang YC, Li S, Stine OC, Hasturk H, Kasif S, Segrè D, Pop M, Amar S.

PLoS One. 2012;7(6):e37919. doi: 10.1371/journal.pone.0037919. Epub 2012 Jun 4.

50.

Identification of Coli Surface Antigen 23, a novel adhesin of enterotoxigenic Escherichia coli.

Del Canto F, Botkin DJ, Valenzuela P, Popov V, Ruiz-Perez F, Nataro JP, Levine MM, Stine OC, Pop M, Torres AG, Vidal R.

Infect Immun. 2012 Aug;80(8):2791-801. doi: 10.1128/IAI.00263-12. Epub 2012 May 29.

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