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Items: 1 to 50 of 103

1.

A Robust, Streamlined, Enzyme-based DNA Library Preparation Method Amenable to a Wide Range of DNA Inputs.

Hoppers A, Apone L, Panchapakesa V, McKay K, Liu P, Song C, Sumner C, Rozzi C, Arn M, Sanford J, Langhorst BW, Shtatland T, Stewart FJ, Munafo D, Dimalanta ET, Davis TB.

J Biomol Tech. 2019 Dec;30(Suppl):S2.

2.

Phylogenetic and structural diversity of aromatically dense pili from environmental metagenomes.

Bray MS, Wu J, Padilla CC, Stewart FJ, Fowle DA, Henny C, Simister RL, Thompson KJ, Crowe SA, Glass JB.

Environ Microbiol Rep. 2019 Nov 7. doi: 10.1111/1758-2229.12809. [Epub ahead of print]

PMID:
31701641
3.

Variable effects of local management on coral defenses against a thermally regulated bleaching pathogen.

Beatty DS, Valayil JM, Clements CS, Ritchie KB, Stewart FJ, Hay ME.

Sci Adv. 2019 Oct 2;5(10):eaay1048. doi: 10.1126/sciadv.aay1048. eCollection 2019 Oct.

4.

The Bacterial Symbionts of Closely Related Hydrothermal Vent Snails With Distinct Geochemical Habitats Show Broad Similarity in Chemoautotrophic Gene Content.

Beinart RA, Luo C, Konstantinidis KT, Stewart FJ, Girguis PR.

Front Microbiol. 2019 Aug 14;10:1818. doi: 10.3389/fmicb.2019.01818. eCollection 2019.

5.

Scientists' warning to humanity: microorganisms and climate change.

Cavicchioli R, Ripple WJ, Timmis KN, Azam F, Bakken LR, Baylis M, Behrenfeld MJ, Boetius A, Boyd PW, Classen AT, Crowther TW, Danovaro R, Foreman CM, Huisman J, Hutchins DA, Jansson JK, Karl DM, Koskella B, Mark Welch DB, Martiny JBH, Moran MA, Orphan VJ, Reay DS, Remais JV, Rich VI, Singh BK, Stein LY, Stewart FJ, Sullivan MB, van Oppen MJH, Weaver SC, Webb EA, Webster NS.

Nat Rev Microbiol. 2019 Sep;17(9):569-586. doi: 10.1038/s41579-019-0222-5. Epub 2019 Jun 18. Review.

PMID:
31213707
6.

Publisher Correction: BRD4 interacts with NIPBL and BRD4 is mutated in a Cornelia de Lange-like syndrome.

Olley G, Ansari M, Bengani H, Grimes GR, Rhodes J, von Kriegsheim A, Blatnik A, Stewart FJ, Wakeling E, Carroll N, Ross A, Park SM; Deciphering Developmental Disorders Study, Bickmore WA, Pradeepa MM, FitzPatrick DR.

Nat Genet. 2019 Jul;51(7):1192. doi: 10.1038/s41588-019-0448-1.

PMID:
31168063
7.

Diversity and relative abundance of ammonia- and nitrite-oxidizing microorganisms in the offshore Namibian hypoxic zone.

Lau E, Frame CH, Nolan EJ 4th, Stewart FJ, Dillard ZW, Lukich DP, Mihalik NE, Yauch KE, Kinker MA, Waychoff SL.

PLoS One. 2019 May 21;14(5):e0217136. doi: 10.1371/journal.pone.0217136. eCollection 2019.

8.

Monopolatic motion vision in the butterfly Papilio xuthus.

Stewart FJ, Kinoshita M, Arikawa K.

J Exp Biol. 2019 Jan 1;222(Pt 1). pii: jeb191957. doi: 10.1242/jeb.191957.

9.

Cyanate and urea are substrates for nitrification by Thaumarchaeota in the marine environment.

Kitzinger K, Padilla CC, Marchant HK, Hach PF, Herbold CW, Kidane AT, Könneke M, Littmann S, Mooshammer M, Niggemann J, Petrov S, Richter A, Stewart FJ, Wagner M, Kuypers MMM, Bristow LA.

Nat Microbiol. 2019 Feb;4(2):234-243. doi: 10.1038/s41564-018-0316-2. Epub 2018 Dec 10.

10.

Intergenerational effects of macroalgae on a reef coral: major declines in larval survival but subtle changes in microbiomes.

Beatty DS, Clements CS, Stewart FJ, Hay ME.

Mar Ecol Prog Ser. 2018;589:97-114. doi: 10.3354/meps12465. Epub 2018 Feb 23.

11.

Feeding Rapidly Alters Microbiome Composition and Gene Transcription in the Clownfish Gut.

Parris DJ, Morgan MM, Stewart FJ.

Appl Environ Microbiol. 2019 Jan 23;85(3). pii: e02479-18. doi: 10.1128/AEM.02479-18. Print 2019 Feb 1.

12.

Author Correction: Microbial niches in marine oxygen minimum zones.

Bertagnolli AD, Stewart FJ.

Nat Rev Microbiol. 2018 Dec;16(12):774. doi: 10.1038/s41579-018-0103-3.

PMID:
30297873
13.

Microbial niches in marine oxygen minimum zones.

Bertagnolli AD, Stewart FJ.

Nat Rev Microbiol. 2018 Dec;16(12):723-729. doi: 10.1038/s41579-018-0087-z. Review. Erratum in: Nat Rev Microbiol. 2018 Oct 8;:.

PMID:
30250271
14.

The Dominant Role of Visual Motion Cues in Bumblebee Flight Control Revealed Through Virtual Reality.

Frasnelli E, Hempel de Ibarra N, Stewart FJ.

Front Physiol. 2018 Jul 31;9:1038. doi: 10.3389/fphys.2018.01038. eCollection 2018.

15.

Broad Phylogenetic Diversity Associated with Nitrogen Loss through Sulfur Oxidation in a Large Public Marine Aquarium.

Burns AS, Padilla CC, Pratte ZA, Gilde K, Regensburger M, Hall E, Dove ADM, Stewart FJ.

Appl Environ Microbiol. 2018 Oct 1;84(20). pii: e01250-18. doi: 10.1128/AEM.01250-18. Print 2018 Oct 15.

16.

Single cell genomic and transcriptomic evidence for the use of alternative nitrogen substrates by anammox bacteria.

Ganesh S, Bertagnolli AD, Bristow LA, Padilla CC, Blackwood N, Aldunate M, Bourbonnais A, Altabet MA, Malmstrom RR, Woyke T, Ulloa O, Konstantinidis KT, Thamdrup B, Stewart FJ.

ISME J. 2018 Nov;12(11):2706-2722. doi: 10.1038/s41396-018-0223-9. Epub 2018 Jul 10.

17.

Applying fecal microbiota transplantation (FMT) to treat recurrent Clostridium difficile infections (rCDI) in children.

Fareed S, Sarode N, Stewart FJ, Malik A, Laghaie E, Khizer S, Yan F, Pratte Z, Lewis J, Immergluck LC.

PeerJ. 2018 May 30;6:e4663. doi: 10.7717/peerj.4663. eCollection 2018.

18.

Microbiome Dynamics in a Large Artificial Seawater Aquarium.

Patin NV, Pratte ZA, Regensburger M, Hall E, Gilde K, Dove ADM, Stewart FJ.

Appl Environ Microbiol. 2018 May 1;84(10). pii: e00179-18. doi: 10.1128/AEM.00179-18. Print 2018 May 15.

19.

The Gills of Reef Fish Support a Distinct Microbiome Influenced by Host-Specific Factors.

Pratte ZA, Besson M, Hollman RD, Stewart FJ.

Appl Environ Microbiol. 2018 Apr 16;84(9). pii: e00063-18. doi: 10.1128/AEM.00063-18. Print 2018 May 1.

20.

Publisher Correction: BRD4 interacts with NIPBL and BRD4 is mutated in a Cornelia de Lange-like syndrome.

Olley G, Ansari M, Bengani H, Grimes GR, Rhodes J, von Kriegsheim A, Blatnik A, Stewart FJ, Wakeling E, Carroll N, Ross A, Park SM, Bickmore WA, Pradeepa MM, FitzPatrick DR; Deciphering Developmental Disorders Study.

Nat Genet. 2018 May;50(5):767. doi: 10.1038/s41588-018-0069-0.

PMID:
29440723
21.

BRD4 interacts with NIPBL and BRD4 is mutated in a Cornelia de Lange-like syndrome.

Olley G, Ansari M, Bengani H, Grimes GR, Rhodes J, von Kriegsheim A, Blatnik A, Stewart FJ, Wakeling E, Carroll N, Ross A, Park SM; Deciphering Developmental Disorders Study, Bickmore WA, Pradeepa MM, FitzPatrick DR.

Nat Genet. 2018 Mar;50(3):329-332. doi: 10.1038/s41588-018-0042-y. Epub 2018 Jan 29. Erratum in: Nat Genet. 2018 Feb 12;:. Nat Genet. 2019 Jul;51(7):1192.

22.

Impact of long-term elosulfase alfa on activities of daily living in patients with Morquio A syndrome in an open-label, multi-center, phase 3 extension study.

Hendriksz CJ, Parini R, AlSayed MD, Raiman J, Giugliani R, Mitchell JJ, Burton BK, Guelbert N, Stewart FJ, Hughes DA, Matousek R, Hawley SM, Decker C, Harmatz PR.

Mol Genet Metab. 2018 Feb;123(2):127-134. doi: 10.1016/j.ymgme.2017.11.015. Epub 2017 Dec 5.

23.

A Novel Display System Reveals Anisotropic Polarization Perception in the Motion Vision of the Butterfly Papilio xuthus.

Stewart FJ, Kinoshita M, Arikawa K.

Integr Comp Biol. 2017 Nov 1;57(5):1130-1138. doi: 10.1093/icb/icx070.

PMID:
28992194
24.

Season, but not symbiont state, drives microbiome structure in the temperate coral Astrangia poculata.

Sharp KH, Pratte ZA, Kerwin AH, Rotjan RD, Stewart FJ.

Microbiome. 2017 Sep 15;5(1):120. doi: 10.1186/s40168-017-0329-8.

25.

Red-shift of spectral sensitivity due to screening pigment migration in the eyes of a moth, Adoxophyes orana.

Satoh A, Stewart FJ, Koshitaka H, Akashi HD, Pirih P, Sato Y, Arikawa K.

Zoological Lett. 2017 Aug 30;3:14. doi: 10.1186/s40851-017-0075-6. eCollection 2017.

26.

Metabolic potential and in situ activity of marine Marinimicrobia bacteria in an anoxic water column.

Bertagnolli AD, Padilla CC, Glass JB, Thamdrup B, Stewart FJ.

Environ Microbiol. 2017 Nov;19(11):4392-4416. doi: 10.1111/1462-2920.13879. Epub 2017 Nov 2.

PMID:
28771968
27.

Cryptic oxygen cycling in anoxic marine zones.

Garcia-Robledo E, Padilla CC, Aldunate M, Stewart FJ, Ulloa O, Paulmier A, Gregori G, Revsbech NP.

Proc Natl Acad Sci U S A. 2017 Aug 1;114(31):8319-8324. doi: 10.1073/pnas.1619844114. Epub 2017 Jul 17.

28.

Putative archaeal viruses from the mesopelagic ocean.

Vik DR, Roux S, Brum JR, Bolduc B, Emerson JB, Padilla CC, Stewart FJ, Sullivan MB.

PeerJ. 2017 Jun 15;5:e3428. doi: 10.7717/peerj.3428. eCollection 2017.

29.

The factors affecting lipid profile in adult patients with Mucopolysaccharidosis.

Stepien KM, Stewart FJ, Hendriksz CJ.

Mol Genet Metab Rep. 2017 May 18;12:35-40. doi: 10.1016/j.ymgmr.2017.05.006. eCollection 2017 Sep.

30.

Shifting microbial communities sustain multiyear iron reduction and methanogenesis in ferruginous sediment incubations.

Bray MS, Wu J, Reed BC, Kretz CB, Belli KM, Simister RL, Henny C, Stewart FJ, DiChristina TJ, Brandes JA, Fowle DA, Crowe SA, Glass JB.

Geobiology. 2017 Sep;15(5):678-689. doi: 10.1111/gbi.12239. Epub 2017 Apr 17.

PMID:
28419718
31.

Multisensory integration in Lepidoptera: Insights into flower-visitor interactions.

Kinoshita M, Stewart FJ, Ômura H.

Bioessays. 2017 Apr;39(4). doi: 10.1002/bies.201600086. Epub 2017 Feb 7. Review.

PMID:
28169433
32.

Histiocytoid cardiomyopathy and microphthalmia with linear skin defects syndrome: phenotypes linked by truncating variants in NDUFB11.

Rea G, Homfray T, Till J, Roses-Noguer F, Buchan RJ, Wilkinson S, Wilk A, Walsh R, John S, McKee S, Stewart FJ, Murday V, Taylor RW, Ashworth M, Baksi AJ, Daubeney P, Prasad S, Barton PJR, Cook SA, Ware JS.

Cold Spring Harb Mol Case Stud. 2017 Jan;3(1):a001271. doi: 10.1101/mcs.a001271.

33.

Whole gut microbiome composition of damselfish and cardinalfish before and after reef settlement.

Parris DJ, Brooker RM, Morgan MA, Dixson DL, Stewart FJ.

PeerJ. 2016 Aug 31;4:e2412. doi: 10.7717/peerj.2412. eCollection 2016.

34.

Pregnancy in patients with mucopolysaccharidosis: a case series.

Stewart FJ, Bentley A, Burton BK, Guffon N, Hale SL, Harmatz PR, Kircher SG, Kochhar PK, Mitchell JJ, Plöckinger U, Graham S, Sande S, Sisic Z, Johnston TA.

Mol Genet Metab Rep. 2016 Aug 29;8:111-5. doi: 10.1016/j.ymgmr.2016.08.002. eCollection 2016 Sep.

35.

SAR11 bacteria linked to ocean anoxia and nitrogen loss.

Tsementzi D, Wu J, Deutsch S, Nath S, Rodriguez-R LM, Burns AS, Ranjan P, Sarode N, Malmstrom RR, Padilla CC, Stone BK, Bristow LA, Larsen M, Glass JB, Thamdrup B, Woyke T, Konstantinidis KT, Stewart FJ.

Nature. 2016 Aug 11;536(7615):179-83. Epub 2016 Aug 3.

36.

Metatranscriptional Response of Chemoautotrophic Ifremeria nautilei Endosymbionts to Differing Sulfur Regimes.

Seston SL, Beinart RA, Sarode N, Shockey AC, Ranjan P, Ganesh S, Girguis PR, Stewart FJ.

Front Microbiol. 2016 Jul 19;7:1074. doi: 10.3389/fmicb.2016.01074. eCollection 2016.

37.

A Microbiome DNA Enrichment Method for Next-Generation Sequencing Sample Preparation.

Yigit E, Feehery GR, Langhorst BW, Stewart FJ, Dimalanta ET, Pradhan S, Slatko B, Gardner AF, McFarland J, Sumner C, Davis TB.

Curr Protoc Mol Biol. 2016 Jul 1;115:7.26.1-7.26.14. doi: 10.1002/cpmb.12.

PMID:
27366894
38.

NC10 bacteria in marine oxygen minimum zones.

Padilla CC, Bristow LA, Sarode N, Garcia-Robledo E, Gómez Ramírez E, Benson CR, Bourbonnais A, Altabet MA, Girguis PR, Thamdrup B, Stewart FJ.

ISME J. 2016 Aug;10(8):2067-71. doi: 10.1038/ismej.2015.262. Epub 2016 Feb 26.

39.

Comprehensive nucleosome mapping of the human genome in cancer progression.

Druliner BR, Vera D, Johnson R, Ruan X, Apone LM, Dimalanta ET, Stewart FJ, Boardman L, Dennis JH.

Oncotarget. 2016 Mar 22;7(12):13429-45. doi: 10.18632/oncotarget.6811.

40.

Selective Depletion of Abundant RNAs to Enable Transcriptome Analysis of Low-Input and Highly Degraded Human RNA.

Munafó DB, Langhorst BW, Chater CL, Sumner CJ, Rodríguez DN, Russello S, Gardner AF, Slatko BE, Stewart FJ, Sinicropi D, Morlan J, Qu K, Dimalanta ET, Davis TB.

Curr Protoc Mol Biol. 2016 Jan;113(1):7.22.1-7.22.9. doi: 10.1002/0471142727.mb0722s113.

PMID:
31773915
41.

The butterfly Papilio xuthus detects visual motion using chromatic contrast.

Stewart FJ, Kinoshita M, Arikawa K.

Biol Lett. 2015 Oct;11(10). pii: 20150687. doi: 10.1098/rsbl.2015.0687.

42.

Meta-omic signatures of microbial metal and nitrogen cycling in marine oxygen minimum zones.

Glass JB, Kretz CB, Ganesh S, Ranjan P, Seston SL, Buck KN, Landing WM, Morton PL, Moffett JW, Giovannoni SJ, Vergin KL, Stewart FJ.

Front Microbiol. 2015 Sep 28;6:998. doi: 10.3389/fmicb.2015.00998. eCollection 2015.

43.

Standard filtration practices may significantly distort planktonic microbial diversity estimates.

Padilla CC, Ganesh S, Gantt S, Huhman A, Parris DJ, Sarode N, Stewart FJ.

Front Microbiol. 2015 Jun 2;6:547. doi: 10.3389/fmicb.2015.00547. eCollection 2015.

44.

The roles of visual parallax and edge attraction in the foraging behaviour of the butterfly Papilio xuthus.

Stewart FJ, Kinoshita M, Arikawa K.

J Exp Biol. 2015 Jun;218(Pt 11):1725-32. doi: 10.1242/jeb.115063. Epub 2015 Apr 16.

45.

Size-fractionated diversity of eukaryotic microbial communities in the Eastern Tropical North Pacific oxygen minimum zone.

Duret MT, Pachiadaki MG, Stewart FJ, Sarode N, Christaki U, Monchy S, Srivastava A, Edgcomb VP.

FEMS Microbiol Ecol. 2015 May;91(5). pii: fiv037. doi: 10.1093/femsec/fiv037. Epub 2015 Apr 1.

PMID:
25873468
46.

Size-fraction partitioning of community gene transcription and nitrogen metabolism in a marine oxygen minimum zone.

Ganesh S, Bristow LA, Larsen M, Sarode N, Thamdrup B, Stewart FJ.

ISME J. 2015 Dec;9(12):2682-96. doi: 10.1038/ismej.2015.44. Epub 2015 Apr 7.

47.

Microbial eukaryote diversity in the marine oxygen minimum zone off northern Chile.

Parris DJ, Ganesh S, Edgcomb VP, DeLong EF, Stewart FJ.

Front Microbiol. 2014 Oct 28;5:543. doi: 10.3389/fmicb.2014.00543. eCollection 2014.

48.

Oxygen at nanomolar levels reversibly suppresses process rates and gene expression in anammox and denitrification in the oxygen minimum zone off northern Chile.

Dalsgaard T, Stewart FJ, Thamdrup B, De Brabandere L, Revsbech NP, Ulloa O, Canfield DE, DeLong EF.

mBio. 2014 Oct 28;5(6):e01966. doi: 10.1128/mBio.01966-14.

49.

The genome of the intracellular bacterium of the coastal bivalve, Solemya velum: a blueprint for thriving in and out of symbiosis.

Dmytrenko O, Russell SL, Loo WT, Fontanez KM, Liao L, Roeselers G, Sharma R, Stewart FJ, Newton IL, Woyke T, Wu D, Lang JM, Eisen JA, Cavanaugh CM.

BMC Genomics. 2014 Oct 23;15:924. doi: 10.1186/1471-2164-15-924.

50.

Saccharide breakdown and fermentation by the honey bee gut microbiome.

Lee FJ, Rusch DB, Stewart FJ, Mattila HR, Newton IL.

Environ Microbiol. 2015 Mar;17(3):796-815. doi: 10.1111/1462-2920.12526. Epub 2014 Jul 8.

PMID:
24905222

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