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Items: 1 to 50 of 95

1.

Monopolatic motion vision in the butterfly Papilio xuthus.

Stewart FJ, Kinoshita M, Arikawa K.

J Exp Biol. 2019 Jan 1;222(Pt 1). pii: jeb191957. doi: 10.1242/jeb.191957.

PMID:
30602464
2.

Cyanate and urea are substrates for nitrification by Thaumarchaeota in the marine environment.

Kitzinger K, Padilla CC, Marchant HK, Hach PF, Herbold CW, Kidane AT, Könneke M, Littmann S, Mooshammer M, Niggemann J, Petrov S, Richter A, Stewart FJ, Wagner M, Kuypers MMM, Bristow LA.

Nat Microbiol. 2018 Dec 10. doi: 10.1038/s41564-018-0316-2. [Epub ahead of print]

PMID:
30531977
3.

Intergenerational effects of macroalgae on a reef coral: major declines in larval survival but subtle changes in microbiomes.

Beatty DS, Clements CS, Stewart FJ, Hay ME.

Mar Ecol Prog Ser. 2018;589:97-114. doi: 10.3354/meps12465. Epub 2018 Feb 23.

4.

Feeding rapidly alters microbiome composition and gene transcription in the clownfish gut.

Parris DJ, Morgan MM, Stewart FJ.

Appl Environ Microbiol. 2018 Nov 16. pii: AEM.02479-18. doi: 10.1128/AEM.02479-18. [Epub ahead of print]

PMID:
30446559
5.

Author Correction: Microbial niches in marine oxygen minimum zones.

Bertagnolli AD, Stewart FJ.

Nat Rev Microbiol. 2018 Dec;16(12):774. doi: 10.1038/s41579-018-0103-3.

PMID:
30297873
6.

Microbial niches in marine oxygen minimum zones.

Bertagnolli AD, Stewart FJ.

Nat Rev Microbiol. 2018 Dec;16(12):723-729. doi: 10.1038/s41579-018-0087-z. Review. Erratum in: Nat Rev Microbiol. 2018 Oct 8;:.

PMID:
30250271
7.

The Dominant Role of Visual Motion Cues in Bumblebee Flight Control Revealed Through Virtual Reality.

Frasnelli E, Hempel de Ibarra N, Stewart FJ.

Front Physiol. 2018 Jul 31;9:1038. doi: 10.3389/fphys.2018.01038. eCollection 2018.

8.

Broad Phylogenetic Diversity Associated with Nitrogen Loss through Sulfur Oxidation in a Large Public Marine Aquarium.

Burns AS, Padilla CC, Pratte ZA, Gilde K, Regensburger M, Hall E, Dove ADM, Stewart FJ.

Appl Environ Microbiol. 2018 Oct 1;84(20). pii: e01250-18. doi: 10.1128/AEM.01250-18. Print 2018 Oct 15.

PMID:
30097447
9.

Single cell genomic and transcriptomic evidence for the use of alternative nitrogen substrates by anammox bacteria.

Ganesh S, Bertagnolli AD, Bristow LA, Padilla CC, Blackwood N, Aldunate M, Bourbonnais A, Altabet MA, Malmstrom RR, Woyke T, Ulloa O, Konstantinidis KT, Thamdrup B, Stewart FJ.

ISME J. 2018 Nov;12(11):2706-2722. doi: 10.1038/s41396-018-0223-9. Epub 2018 Jul 10.

PMID:
29991764
10.

Applying fecal microbiota transplantation (FMT) to treat recurrent Clostridium difficile infections (rCDI) in children.

Fareed S, Sarode N, Stewart FJ, Malik A, Laghaie E, Khizer S, Yan F, Pratte Z, Lewis J, Immergluck LC.

PeerJ. 2018 May 30;6:e4663. doi: 10.7717/peerj.4663. eCollection 2018.

11.

Microbiome Dynamics in a Large Artificial Seawater Aquarium.

Patin NV, Pratte ZA, Regensburger M, Hall E, Gilde K, Dove ADM, Stewart FJ.

Appl Environ Microbiol. 2018 May 1;84(10). pii: e00179-18. doi: 10.1128/AEM.00179-18. Print 2018 May 15.

12.

The Gills of Reef Fish Support a Distinct Microbiome Influenced by Host-Specific Factors.

Pratte ZA, Besson M, Hollman RD, Stewart FJ.

Appl Environ Microbiol. 2018 Apr 16;84(9). pii: e00063-18. doi: 10.1128/AEM.00063-18. Print 2018 May 1.

13.

Publisher Correction: BRD4 interacts with NIPBL and BRD4 is mutated in a Cornelia de Lange-like syndrome.

Olley G, Ansari M, Bengani H, Grimes GR, Rhodes J, von Kriegsheim A, Blatnik A, Stewart FJ, Wakeling E, Carroll N, Ross A, Park SM, Bickmore WA, Pradeepa MM, FitzPatrick DR; Deciphering Developmental Disorders Study.

Nat Genet. 2018 May;50(5):767. doi: 10.1038/s41588-018-0069-0.

PMID:
29440723
14.

BRD4 interacts with NIPBL and BRD4 is mutated in a Cornelia de Lange-like syndrome.

Olley G, Ansari M, Bengani H, Grimes GR, Rhodes J, von Kriegsheim A, Blatnik A, Stewart FJ, Wakeling E, Carroll N, Ross A, Park SM, Bickmore WA, Pradeepa MM, FitzPatrick DR; Deciphering Developmental Disorders Study.

Nat Genet. 2018 Mar;50(3):329-332. doi: 10.1038/s41588-018-0042-y. Epub 2018 Jan 29. Erratum in: Nat Genet. 2018 Feb 12;:.

PMID:
29379197
15.

Impact of long-term elosulfase alfa on activities of daily living in patients with Morquio A syndrome in an open-label, multi-center, phase 3 extension study.

Hendriksz CJ, Parini R, AlSayed MD, Raiman J, Giugliani R, Mitchell JJ, Burton BK, Guelbert N, Stewart FJ, Hughes DA, Matousek R, Hawley SM, Decker C, Harmatz PR.

Mol Genet Metab. 2018 Feb;123(2):127-134. doi: 10.1016/j.ymgme.2017.11.015. Epub 2017 Dec 5.

16.

A Novel Display System Reveals Anisotropic Polarization Perception in the Motion Vision of the Butterfly Papilio xuthus.

Stewart FJ, Kinoshita M, Arikawa K.

Integr Comp Biol. 2017 Nov 1;57(5):1130-1138. doi: 10.1093/icb/icx070.

PMID:
28992194
17.

Season, but not symbiont state, drives microbiome structure in the temperate coral Astrangia poculata.

Sharp KH, Pratte ZA, Kerwin AH, Rotjan RD, Stewart FJ.

Microbiome. 2017 Sep 15;5(1):120. doi: 10.1186/s40168-017-0329-8.

18.

Red-shift of spectral sensitivity due to screening pigment migration in the eyes of a moth, Adoxophyes orana.

Satoh A, Stewart FJ, Koshitaka H, Akashi HD, Pirih P, Sato Y, Arikawa K.

Zoological Lett. 2017 Aug 30;3:14. doi: 10.1186/s40851-017-0075-6. eCollection 2017.

19.

Metabolic potential and in situ activity of marine Marinimicrobia bacteria in an anoxic water column.

Bertagnolli AD, Padilla CC, Glass JB, Thamdrup B, Stewart FJ.

Environ Microbiol. 2017 Nov;19(11):4392-4416. doi: 10.1111/1462-2920.13879. Epub 2017 Nov 2.

PMID:
28771968
20.

Cryptic oxygen cycling in anoxic marine zones.

Garcia-Robledo E, Padilla CC, Aldunate M, Stewart FJ, Ulloa O, Paulmier A, Gregori G, Revsbech NP.

Proc Natl Acad Sci U S A. 2017 Aug 1;114(31):8319-8324. doi: 10.1073/pnas.1619844114. Epub 2017 Jul 17.

21.

Putative archaeal viruses from the mesopelagic ocean.

Vik DR, Roux S, Brum JR, Bolduc B, Emerson JB, Padilla CC, Stewart FJ, Sullivan MB.

PeerJ. 2017 Jun 15;5:e3428. doi: 10.7717/peerj.3428. eCollection 2017.

22.

The factors affecting lipid profile in adult patients with Mucopolysaccharidosis.

Stepien KM, Stewart FJ, Hendriksz CJ.

Mol Genet Metab Rep. 2017 May 18;12:35-40. doi: 10.1016/j.ymgmr.2017.05.006. eCollection 2017 Sep.

23.

Shifting microbial communities sustain multiyear iron reduction and methanogenesis in ferruginous sediment incubations.

Bray MS, Wu J, Reed BC, Kretz CB, Belli KM, Simister RL, Henny C, Stewart FJ, DiChristina TJ, Brandes JA, Fowle DA, Crowe SA, Glass JB.

Geobiology. 2017 Sep;15(5):678-689. doi: 10.1111/gbi.12239. Epub 2017 Apr 17.

PMID:
28419718
24.

Multisensory integration in Lepidoptera: Insights into flower-visitor interactions.

Kinoshita M, Stewart FJ, Ômura H.

Bioessays. 2017 Apr;39(4). doi: 10.1002/bies.201600086. Epub 2017 Feb 7. Review.

PMID:
28169433
25.

Histiocytoid cardiomyopathy and microphthalmia with linear skin defects syndrome: phenotypes linked by truncating variants in NDUFB11.

Rea G, Homfray T, Till J, Roses-Noguer F, Buchan RJ, Wilkinson S, Wilk A, Walsh R, John S, McKee S, Stewart FJ, Murday V, Taylor RW, Ashworth M, Baksi AJ, Daubeney P, Prasad S, Barton PJR, Cook SA, Ware JS.

Cold Spring Harb Mol Case Stud. 2017 Jan;3(1):a001271. doi: 10.1101/mcs.a001271.

26.

Whole gut microbiome composition of damselfish and cardinalfish before and after reef settlement.

Parris DJ, Brooker RM, Morgan MA, Dixson DL, Stewart FJ.

PeerJ. 2016 Aug 31;4:e2412. doi: 10.7717/peerj.2412. eCollection 2016.

27.

Pregnancy in patients with mucopolysaccharidosis: a case series.

Stewart FJ, Bentley A, Burton BK, Guffon N, Hale SL, Harmatz PR, Kircher SG, Kochhar PK, Mitchell JJ, Plöckinger U, Graham S, Sande S, Sisic Z, Johnston TA.

Mol Genet Metab Rep. 2016 Aug 29;8:111-5. doi: 10.1016/j.ymgmr.2016.08.002. eCollection 2016 Sep.

28.

SAR11 bacteria linked to ocean anoxia and nitrogen loss.

Tsementzi D, Wu J, Deutsch S, Nath S, Rodriguez-R LM, Burns AS, Ranjan P, Sarode N, Malmstrom RR, Padilla CC, Stone BK, Bristow LA, Larsen M, Glass JB, Thamdrup B, Woyke T, Konstantinidis KT, Stewart FJ.

Nature. 2016 Aug 11;536(7615):179-83. Epub 2016 Aug 3.

29.

Metatranscriptional Response of Chemoautotrophic Ifremeria nautilei Endosymbionts to Differing Sulfur Regimes.

Seston SL, Beinart RA, Sarode N, Shockey AC, Ranjan P, Ganesh S, Girguis PR, Stewart FJ.

Front Microbiol. 2016 Jul 19;7:1074. doi: 10.3389/fmicb.2016.01074. eCollection 2016.

30.

A Microbiome DNA Enrichment Method for Next-Generation Sequencing Sample Preparation.

Yigit E, Feehery GR, Langhorst BW, Stewart FJ, Dimalanta ET, Pradhan S, Slatko B, Gardner AF, McFarland J, Sumner C, Davis TB.

Curr Protoc Mol Biol. 2016 Jul 1;115:7.26.1-7.26.14. doi: 10.1002/cpmb.12.

PMID:
27366894
31.

NC10 bacteria in marine oxygen minimum zones.

Padilla CC, Bristow LA, Sarode N, Garcia-Robledo E, Gómez Ramírez E, Benson CR, Bourbonnais A, Altabet MA, Girguis PR, Thamdrup B, Stewart FJ.

ISME J. 2016 Aug;10(8):2067-71. doi: 10.1038/ismej.2015.262. Epub 2016 Feb 26.

32.

Comprehensive nucleosome mapping of the human genome in cancer progression.

Druliner BR, Vera D, Johnson R, Ruan X, Apone LM, Dimalanta ET, Stewart FJ, Boardman L, Dennis JH.

Oncotarget. 2016 Mar 22;7(12):13429-45. doi: 10.18632/oncotarget.6811.

33.

The butterfly Papilio xuthus detects visual motion using chromatic contrast.

Stewart FJ, Kinoshita M, Arikawa K.

Biol Lett. 2015 Oct;11(10). pii: 20150687. doi: 10.1098/rsbl.2015.0687.

34.

Meta-omic signatures of microbial metal and nitrogen cycling in marine oxygen minimum zones.

Glass JB, Kretz CB, Ganesh S, Ranjan P, Seston SL, Buck KN, Landing WM, Morton PL, Moffett JW, Giovannoni SJ, Vergin KL, Stewart FJ.

Front Microbiol. 2015 Sep 28;6:998. doi: 10.3389/fmicb.2015.00998. eCollection 2015.

35.

Standard filtration practices may significantly distort planktonic microbial diversity estimates.

Padilla CC, Ganesh S, Gantt S, Huhman A, Parris DJ, Sarode N, Stewart FJ.

Front Microbiol. 2015 Jun 2;6:547. doi: 10.3389/fmicb.2015.00547. eCollection 2015.

36.

The roles of visual parallax and edge attraction in the foraging behaviour of the butterfly Papilio xuthus.

Stewart FJ, Kinoshita M, Arikawa K.

J Exp Biol. 2015 Jun;218(Pt 11):1725-32. doi: 10.1242/jeb.115063. Epub 2015 Apr 16.

37.

Size-fractionated diversity of eukaryotic microbial communities in the Eastern Tropical North Pacific oxygen minimum zone.

Duret MT, Pachiadaki MG, Stewart FJ, Sarode N, Christaki U, Monchy S, Srivastava A, Edgcomb VP.

FEMS Microbiol Ecol. 2015 May;91(5). pii: fiv037. doi: 10.1093/femsec/fiv037. Epub 2015 Apr 1.

PMID:
25873468
38.

Size-fraction partitioning of community gene transcription and nitrogen metabolism in a marine oxygen minimum zone.

Ganesh S, Bristow LA, Larsen M, Sarode N, Thamdrup B, Stewart FJ.

ISME J. 2015 Dec;9(12):2682-96. doi: 10.1038/ismej.2015.44. Epub 2015 Apr 7.

39.

Microbial eukaryote diversity in the marine oxygen minimum zone off northern Chile.

Parris DJ, Ganesh S, Edgcomb VP, DeLong EF, Stewart FJ.

Front Microbiol. 2014 Oct 28;5:543. doi: 10.3389/fmicb.2014.00543. eCollection 2014.

40.

Oxygen at nanomolar levels reversibly suppresses process rates and gene expression in anammox and denitrification in the oxygen minimum zone off northern Chile.

Dalsgaard T, Stewart FJ, Thamdrup B, De Brabandere L, Revsbech NP, Ulloa O, Canfield DE, DeLong EF.

MBio. 2014 Oct 28;5(6):e01966. doi: 10.1128/mBio.01966-14.

41.

The genome of the intracellular bacterium of the coastal bivalve, Solemya velum: a blueprint for thriving in and out of symbiosis.

Dmytrenko O, Russell SL, Loo WT, Fontanez KM, Liao L, Roeselers G, Sharma R, Stewart FJ, Newton IL, Woyke T, Wu D, Lang JM, Eisen JA, Cavanaugh CM.

BMC Genomics. 2014 Oct 23;15:924. doi: 10.1186/1471-2164-15-924.

42.

Saccharide breakdown and fermentation by the honey bee gut microbiome.

Lee FJ, Rusch DB, Stewart FJ, Mattila HR, Newton IL.

Environ Microbiol. 2015 Mar;17(3):796-815. doi: 10.1111/1462-2920.12526. Epub 2014 Jul 8.

PMID:
24905222
43.

CRISPR/Cas9 systems have off-target activity with insertions or deletions between target DNA and guide RNA sequences.

Lin Y, Cradick TJ, Brown MT, Deshmukh H, Ranjan P, Sarode N, Wile BM, Vertino PM, Stewart FJ, Bao G.

Nucleic Acids Res. 2014 Jun;42(11):7473-85. doi: 10.1093/nar/gku402. Epub 2014 May 16.

44.

A method for selectively enriching microbial DNA from contaminating vertebrate host DNA.

Feehery GR, Yigit E, Oyola SO, Langhorst BW, Schmidt VT, Stewart FJ, Dimalanta ET, Amaral-Zettler LA, Davis T, Quail MA, Pradhan S.

PLoS One. 2013 Oct 28;8(10):e76096. doi: 10.1371/journal.pone.0076096. eCollection 2013.

45.

Preparation of microbial community cDNA for metatranscriptomic analysis in marine plankton.

Stewart FJ.

Methods Enzymol. 2013;531:187-218. doi: 10.1016/B978-0-12-407863-5.00010-1.

PMID:
24060122
46.

Metagenomic analysis of size-fractionated picoplankton in a marine oxygen minimum zone.

Ganesh S, Parris DJ, DeLong EF, Stewart FJ.

ISME J. 2014 Jan;8(1):187-211. doi: 10.1038/ismej.2013.144. Epub 2013 Sep 12.

47.

Genetic biomarkers in aortopathy.

Rea G, Stewart FJ.

Biomark Med. 2013 Aug;7(4):547-63. doi: 10.2217/bmm.13.74. Review.

PMID:
23905890
48.

Metatranscriptomics reveal differences in in situ energy and nitrogen metabolism among hydrothermal vent snail symbionts.

Sanders JG, Beinart RA, Stewart FJ, Delong EF, Girguis PR.

ISME J. 2013 Aug;7(8):1556-67. doi: 10.1038/ismej.2013.45. Epub 2013 Apr 25.

49.

Reduced dosage of ERF causes complex craniosynostosis in humans and mice and links ERK1/2 signaling to regulation of osteogenesis.

Twigg SR, Vorgia E, McGowan SJ, Peraki I, Fenwick AL, Sharma VP, Allegra M, Zaragkoulias A, Sadighi Akha E, Knight SJ, Lord H, Lester T, Izatt L, Lampe AK, Mohammed SN, Stewart FJ, Verloes A, Wilson LC, Healy C, Sharpe PT, Hammond P, Hughes J, Taylor S, Johnson D, Wall SA, Mavrothalassitis G, Wilkie AO.

Nat Genet. 2013 Mar;45(3):308-13. doi: 10.1038/ng.2539. Epub 2013 Jan 27.

50.

Microbial oceanography of anoxic oxygen minimum zones.

Ulloa O, Canfield DE, DeLong EF, Letelier RM, Stewart FJ.

Proc Natl Acad Sci U S A. 2012 Oct 2;109(40):15996-6003. doi: 10.1073/pnas.1205009109. Epub 2012 Sep 11. Review.

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