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Items: 35

1.

Minimum Information about an Uncultivated Virus Genome (MIUViG).

Roux S, Adriaenssens EM, Dutilh BE, Koonin EV, Kropinski AM, Krupovic M, Kuhn JH, Lavigne R, Brister JR, Varsani A, Amid C, Aziz RK, Bordenstein SR, Bork P, Breitbart M, Cochrane GR, Daly RA, Desnues C, Duhaime MB, Emerson JB, Enault F, Fuhrman JA, Hingamp P, Hugenholtz P, Hurwitz BL, Ivanova NN, Labonté JM, Lee KB, Malmstrom RR, Martinez-Garcia M, Mizrachi IK, Ogata H, Páez-Espino D, Petit MA, Putonti C, Rattei T, Reyes A, Rodriguez-Valera F, Rosario K, Schriml L, Schulz F, Steward GF, Sullivan MB, Sunagawa S, Suttle CA, Temperton B, Tringe SG, Thurber RV, Webster NS, Whiteson KL, Wilhelm SW, Wommack KE, Woyke T, Wrighton KC, Yilmaz P, Yoshida T, Young MJ, Yutin N, Allen LZ, Kyrpides NC, Eloe-Fadrosh EA.

Nat Biotechnol. 2019 Jan;37(1):29-37. doi: 10.1038/nbt.4306. Epub 2018 Dec 17.

PMID:
30556814
2.

Host Traits Drive Viral Life Histories across Phytoplankton Viruses.

Edwards KF, Steward GF.

Am Nat. 2018 May;191(5):566-581. doi: 10.1086/696849. Epub 2018 Mar 16.

PMID:
29693441
3.

A giant virus infecting green algae encodes key fermentation genes.

Schvarcz CR, Steward GF.

Virology. 2018 May;518:423-433. doi: 10.1016/j.virol.2018.03.010. Epub 2018 Apr 9.

4.

Viruses in the Oceanic Basement.

Nigro OD, Jungbluth SP, Lin HT, Hsieh CC, Miranda JA, Schvarcz CR, Rappé MS, Steward GF.

MBio. 2017 Mar 7;8(2). pii: e02129-16. doi: 10.1128/mBio.02129-16.

5.

Variables influencing the efficiency and interpretation of reverse transcription quantitative PCR (RT-qPCR): An empirical study using Bacteriophage MS2.

Miranda JA, Steward GF.

J Virol Methods. 2017 Mar;241:1-10. doi: 10.1016/j.jviromet.2016.12.002. Epub 2016 Dec 7.

6.

RNA viruses as major contributors to Antarctic virioplankton.

Miranda JA, Culley AI, Schvarcz CR, Steward GF.

Environ Microbiol. 2016 Nov;18(11):3714-3727. doi: 10.1111/1462-2920.13291. Epub 2016 Apr 28.

PMID:
26950773
7.

Differential specificity of selective culture media for enumeration of pathogenic vibrios: advantages and limitations of multi-plating methods.

Nigro OD, Steward GF.

J Microbiol Methods. 2015 Apr;111:24-30. doi: 10.1016/j.mimet.2015.01.014. Epub 2015 Jan 17.

PMID:
25602161
8.

Draft genome sequence of marine alphaproteobacterial strain HIMB11, the first cultivated representative of a unique lineage within the Roseobacter clade possessing an unusually small genome.

Durham BP, Grote J, Whittaker KA, Bender SJ, Luo H, Grim SL, Brown JM, Casey JR, Dron A, Florez-Leiva L, Krupke A, Luria CM, Mine AH, Nigro OD, Pather S, Talarmin A, Wear EK, Weber TS, Wilson JM, Church MJ, DeLong EF, Karl DM, Steward GF, Eppley JM, Kyrpides NC, Schuster S, Rappé MS.

Stand Genomic Sci. 2014 Mar 15;9(3):632-45. doi: 10.4056/sigs.4998989. eCollection 2014 Jun 15.

9.

The characterization of RNA viruses in tropical seawater using targeted PCR and metagenomics.

Culley AI, Mueller JA, Belcaid M, Wood-Charlson EM, Poisson G, Steward GF.

MBio. 2014 Jun 17;5(3):e01210-14. doi: 10.1128/mBio.01210-14.

10.

Variables influencing extraction of nucleic acids from microbial plankton (viruses, bacteria, and protists) collected on nanoporous aluminum oxide filters.

Mueller JA, Culley AI, Steward GF.

Appl Environ Microbiol. 2014 Jul;80(13):3930-42. doi: 10.1128/AEM.00245-14. Epub 2014 Apr 18.

11.

Assembly of a marine viral metagenome after physical fractionation.

Brum JR, Culley AI, Steward GF.

PLoS One. 2013 Apr 8;8(4):e60604. doi: 10.1371/journal.pone.0060604. Print 2013.

12.

Complete genome sequence of bacteriophage VvAW1, which infects Vibrio vulnificus.

Nigro OD, Culley AI, Steward GF.

Stand Genomic Sci. 2012 Jul 30;6(3):415-26. doi: 10.4056/sigs.2846206. Epub 2012 Jul 20.

13.

Are we missing half of the viruses in the ocean?

Steward GF, Culley AI, Mueller JA, Wood-Charlson EM, Belcaid M, Poisson G.

ISME J. 2013 Mar;7(3):672-9. doi: 10.1038/ismej.2012.121. Epub 2012 Nov 15.

14.

Draft genome sequence of strain HIMB100, a cultured representative of the SAR116 clade of marine Alphaproteobacteria.

Grote J, Bayindirli C, Bergauer K, Carpintero de Moraes P, Chen H, D'Ambrosio L, Edwards B, Fernández-Gómez B, Hamisi M, Logares R, Nguyen D, Rii YM, Saeck E, Schutte C, Widner B, Church MJ, Steward GF, Karl DM, Delong EF, Eppley JM, Schuster SC, Kyrpides NC, Rappé MS.

Stand Genomic Sci. 2011 Dec 31;5(3):269-78. doi: 10.4056/sigs.1854551. Epub 2011 Dec 23.

15.
16.

Temporal and spatial variability in culturable pathogenic Vibrio spp. in Lake Pontchartrain, Louisiana, following hurricanes Katrina and Rita.

Nigro OD, Hou A, Vithanage G, Fujioka RS, Steward GF.

Appl Environ Microbiol. 2011 Aug;77(15):5384-93. doi: 10.1128/AEM.02509-10. Epub 2011 Jun 3.

17.

Nitrogenase gene amplicons from global marine surface waters are dominated by genes of non-cyanobacteria.

Farnelid H, Andersson AF, Bertilsson S, Al-Soud WA, Hansen LH, Sørensen S, Steward GF, Hagström Å, Riemann L.

PLoS One. 2011 Apr 29;6(4):e19223. doi: 10.1371/journal.pone.0019223.

18.

Morphological characterization of viruses in the stratified water column of alkaline, hypersaline Mono Lake.

Brum JR, Steward GF.

Microb Ecol. 2010 Oct;60(3):636-43. doi: 10.1007/s00248-010-9688-4. Epub 2010 Jun 3.

PMID:
20521038
19.

RNA viruses in the sea.

Lang AS, Rise ML, Culley AI, Steward GF.

FEMS Microbiol Rev. 2009 Mar;33(2):295-323. doi: 10.1111/j.1574-6976.2008.00132.x. Review.

20.

Detection of inteins among diverse DNA polymerase genes of uncultivated members of the Phycodnaviridae.

Culley AI, Asuncion BF, Steward GF.

ISME J. 2009 Apr;3(4):409-18. doi: 10.1038/ismej.2008.120. Epub 2008 Dec 11.

PMID:
19079065
21.

What's the 'meta' with metagenomics?

Steward GF, Rappé MS.

ISME J. 2007 Jun;1(2):100-2. Epub 2007 May 17. No abstract available.

PMID:
18043619
22.

Divide and conquer: enriching environmental sequencing data.

Bergeron A, Belcaid M, Steward GF, Poisson G.

PLoS One. 2007 Sep 5;2(9):e830.

23.

New genera of RNA viruses in subtropical seawater, inferred from polymerase gene sequences.

Culley AI, Steward GF.

Appl Environ Microbiol. 2007 Sep;73(18):5937-44. Epub 2007 Jul 20.

24.

Impacts of Hurricanes Katrina and Rita on the microbial landscape of the New Orleans area.

Sinigalliano CD, Gidley ML, Shibata T, Whitman D, Dixon TH, Laws E, Hou A, Bachoon D, Brand L, Amaral-Zettler L, Gast RJ, Steward GF, Nigro OD, Fujioka R, Betancourt WQ, Vithanage G, Mathews J, Fleming LE, Solo-Gabriele HM.

Proc Natl Acad Sci U S A. 2007 May 22;104(21):9029-34. Epub 2007 May 8.

25.

Application of a nifH oligonucleotide microarray for profiling diversity of N2-fixing microorganisms in marine microbial mats.

Moisander PH, Shiue L, Steward GF, Jenkins BD, Bebout BM, Zehr JP.

Environ Microbiol. 2006 Oct;8(10):1721-35.

PMID:
16958753
26.

Phylogenetic screening of ribosomal RNA gene-containing clones in Bacterial Artificial Chromosome (BAC) libraries from different depths in Monterey Bay.

Suzuki MT, Preston CM, Béjà O, de la Torre JR, Steward GF, DeLong EF.

Microb Ecol. 2004 Nov;48(4):473-88. Epub 2004 Oct 14.

PMID:
15696381
27.

Vertical distribution of nitrogen-fixing phylotypes in a meromictic, hypersaline lake.

Steward GF, Zehr JP, Jellison R, Montoya JP, Hollibaugh JT.

Microb Ecol. 2004 Jan;47(1):30-40.

PMID:
15259267
28.

Fingerprinting diazotroph communities in the Chesapeake Bay by using a DNA macroarray.

Jenkins BD, Steward GF, Short SM, Ward BB, Zehr JP.

Appl Environ Microbiol. 2004 Mar;70(3):1767-76.

29.

Development and testing of a DNA macroarray to assess nitrogenase (nifH) gene diversity.

Steward GF, Jenkins BD, Ward BB, Zehr JP.

Appl Environ Microbiol. 2004 Mar;70(3):1455-65.

30.

Nitrogenase gene diversity and microbial community structure: a cross-system comparison.

Zehr JP, Jenkins BD, Short SM, Steward GF.

Environ Microbiol. 2003 Jul;5(7):539-54. Review.

PMID:
12823187
31.

Unicellular cyanobacteria fix N2 in the subtropical North Pacific Ocean.

Zehr JP, Waterbury JB, Turner PJ, Montoya JP, Omoregie E, Steward GF, Hansen A, Karl DM.

Nature. 2001 Aug 9;412(6847):635-8.

PMID:
11493920
32.

A simple, rapid method for demonstrating bacterial flagella.

Grossart HP, Steward GF, Martinez J, Azam F.

Appl Environ Microbiol. 2000 Aug;66(8):3632-6.

33.

Dynamics of bacterial community composition and activity during a mesocosm diatom bloom.

Riemann L, Steward GF, Azam F.

Appl Environ Microbiol. 2000 Feb;66(2):578-87. Erratum in: Appl Environ Microbiol 2000 May;66(5):2282.

34.

Bacteria-organic matter coupling and its significance for oceanic carbon cycling.

Azam F, Smith DC, Steward GF, Hagström A.

Microb Ecol. 1994 Sep;28(2):167-79. doi: 10.1007/BF00166806.

PMID:
24186443

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