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Items: 1 to 50 of 348

1.

An Efficient Genome Editing Strategy To Generate Putative Null Mutants in Caenorhabditis elegans Using CRISPR/Cas9.

Wang H, Park H, Liu J, Sternberg PW.

G3 (Bethesda). 2018 Sep 17. pii: g3.200662.2018. doi: 10.1534/g3.118.200662. [Epub ahead of print]

2.

Biology and genome of a newly discovered sibling species of Caenorhabditis elegans.

Kanzaki N, Tsai IJ, Tanaka R, Hunt VL, Liu D, Tsuyama K, Maeda Y, Namai S, Kumagai R, Tracey A, Holroyd N, Doyle SR, Woodruff GC, Murase K, Kitazume H, Chai C, Akagi A, Panda O, Ke HM, Schroeder FC, Wang J, Berriman M, Sternberg PW, Sugimoto A, Kikuchi T.

Nat Commun. 2018 Aug 10;9(1):3216. doi: 10.1038/s41467-018-05712-5.

3.

Using Transcriptomes as Mutant Phenotypes Reveals Functional Regions of a Mediator Subunit in Caenorhabditis elegans.

Angeles-Albores D, Sternberg PW.

Genetics. 2018 Sep;210(1):15-24. doi: 10.1534/genetics.118.301133. Epub 2018 Jul 20.

PMID:
30030292
4.

Micropublication: incentivizing community curation and placing unpublished data into the public domain.

Raciti D, Yook K, Harris TW, Schedl T, Sternberg PW.

Database (Oxford). 2018 Jan 1;2018. doi: 10.1093/database/bay013.

5.

Split cGAL, an intersectional strategy using a split intein for refined spatiotemporal transgene control in Caenorhabditis elegans.

Wang H, Liu J, Yuet KP, Hill AJ, Sternberg PW.

Proc Natl Acad Sci U S A. 2018 Apr 10;115(15):3900-3905. doi: 10.1073/pnas.1720063115. Epub 2018 Mar 26.

6.

Reconstructing a metazoan genetic pathway with transcriptome-wide epistasis measurements.

Angeles-Albores D, Puckett Robinson C, Williams BA, Wold BJ, Sternberg PW.

Proc Natl Acad Sci U S A. 2018 Mar 27;115(13):E2930-E2939. doi: 10.1073/pnas.1712387115. Epub 2018 Mar 12.

7.

Textpresso Central: a customizable platform for searching, text mining, viewing, and curating biomedical literature.

Müller HM, Van Auken KM, Li Y, Sternberg PW.

BMC Bioinformatics. 2018 Mar 9;19(1):94. doi: 10.1186/s12859-018-2103-8.

8.

Metabolomic "Dark Matter" Dependent on Peroxisomal β-Oxidation in Caenorhabditis elegans.

Artyukhin AB, Zhang YK, Akagi AE, Panda O, Sternberg PW, Schroeder FC.

J Am Chem Soc. 2018 Feb 28;140(8):2841-2852. doi: 10.1021/jacs.7b11811. Epub 2018 Feb 16.

PMID:
29401383
9.

A Toolkit of Engineered Recombinational Balancers in C. elegans.

Schwartz HT, Sternberg PW.

Trends Genet. 2018 Apr;34(4):253-255. doi: 10.1016/j.tig.2018.01.009. Epub 2018 Jan 31.

PMID:
29395380
10.

Non-neuronal cell outgrowth in C. elegans.

Ghosh S, Vetrone SA, Sternberg PW.

Worm. 2017 Nov 14;6(3-4):e1405212. doi: 10.1080/21624054.2017.1405212. eCollection 2017. Review.

PMID:
29238627
11.

FMRFamide-like peptides expand the behavioral repertoire of a densely connected nervous system.

Lee JS, Shih PY, Schaedel ON, Quintero-Cadena P, Rogers AK, Sternberg PW.

Proc Natl Acad Sci U S A. 2017 Dec 12;114(50):E10726-E10735. doi: 10.1073/pnas.1710374114. Epub 2017 Nov 22.

12.

Genome-wide discovery of active regulatory elements and transcription factor footprints in Caenorhabditis elegans using DNase-seq.

Ho MCW, Quintero-Cadena P, Sternberg PW.

Genome Res. 2017 Dec;27(12):2108-2119. doi: 10.1101/gr.223735.117. Epub 2017 Oct 26.

13.

WormBase 2017: molting into a new stage.

Lee RYN, Howe KL, Harris TW, Arnaboldi V, Cain S, Chan J, Chen WJ, Davis P, Gao S, Grove C, Kishore R, Muller HM, Nakamura C, Nuin P, Paulini M, Raciti D, Rodgers F, Russell M, Schindelman G, Tuli MA, Van Auken K, Wang Q, Williams G, Wright A, Yook K, Berriman M, Kersey P, Schedl T, Stein L, Sternberg PW.

Nucleic Acids Res. 2018 Jan 4;46(D1):D869-D874. doi: 10.1093/nar/gkx998.

14.

The Jellyfish Cassiopea Exhibits a Sleep-like State.

Nath RD, Bedbrook CN, Abrams MJ, Basinger T, Bois JS, Prober DA, Sternberg PW, Gradinaru V, Goentoro L.

Curr Biol. 2017 Oct 9;27(19):2984-2990.e3. doi: 10.1016/j.cub.2017.08.014. Epub 2017 Sep 21.

15.

The Caenorhabditis elegans Female-Like State: Decoupling the Transcriptomic Effects of Aging and Sperm Status.

Angeles-Albores D, Leighton DHW, Tsou T, Khaw TH, Antoshechkin I, Sternberg PW.

G3 (Bethesda). 2017 Sep 7;7(9):2969-2977. doi: 10.1534/g3.117.300080.

16.

Automated Analysis of a Nematode Population-based Chemosensory Preference Assay.

Chai CM, Cronin CJ, Sternberg PW.

J Vis Exp. 2017 Jul 13;(125). doi: 10.3791/55963.

17.

Deguelin exerts potent nematocidal activity via the mitochondrial respiratory chain.

Preston S, Korhonen PK, Mouchiroud L, Cornaglia M, McGee SL, Young ND, Davis RA, Crawford S, Nowell C, Ansell BRE, Fisher GM, Andrews KT, Chang BCH, Gijs MAM, Sternberg PW, Auwerx J, Baell J, Hofmann A, Jabbar A, Gasser RB.

FASEB J. 2017 Oct;31(10):4515-4532. doi: 10.1096/fj.201700288R. Epub 2017 Jul 7.

PMID:
28687609
18.

Whipworm kinomes reflect a unique biology and adaptation to the host animal.

Stroehlein AJ, Young ND, Korhonen PK, Chang BCH, Nejsum P, Pozio E, La Rosa G, Sternberg PW, Gasser RB.

Int J Parasitol. 2017 Nov;47(13):857-866. doi: 10.1016/j.ijpara.2017.04.005. Epub 2017 Jun 10.

PMID:
28606697
19.

Improved Synthesis for Modular Ascarosides Uncovers Biological Activity.

Zhang YK, Sanchez-Ayala MA, Sternberg PW, Srinivasan J, Schroeder FC.

Org Lett. 2017 Jun 2;19(11):2837-2840. doi: 10.1021/acs.orglett.7b01009. Epub 2017 May 17.

20.

Biosynthesis of Modular Ascarosides in C. elegans.

Panda O, Akagi AE, Artyukhin AB, Judkins JC, Le HH, Mahanti P, Cohen SM, Sternberg PW, Schroeder FC.

Angew Chem Int Ed Engl. 2017 Apr 18;56(17):4729-4733. doi: 10.1002/anie.201700103. Epub 2017 Mar 28.

21.

In Retrospect: Forty years of cellular clues from worms.

Sternberg PW.

Nature. 2017 Mar 29;543(7647):628-630. doi: 10.1038/543628a. No abstract available.

PMID:
28358092
22.

Nematophagous fungus Arthrobotrys oligospora mimics olfactory cues of sex and food to lure its nematode prey.

Hsueh YP, Gronquist MR, Schwarz EM, Nath RD, Lee CH, Gharib S, Schroeder FC, Sternberg PW.

Elife. 2017 Jan 18;6. pii: e20023. doi: 10.7554/eLife.20023.

23.

cGAL, a temperature-robust GAL4-UAS system for Caenorhabditis elegans.

Wang H, Liu J, Gharib S, Chai CM, Schwarz EM, Pokala N, Sternberg PW.

Nat Methods. 2017 Feb;14(2):145-148. doi: 10.1038/nmeth.4109. Epub 2016 Dec 19.

24.

Enhancer Sharing Promotes Neighborhoods of Transcriptional Regulation Across Eukaryotes.

Quintero-Cadena P, Sternberg PW.

G3 (Bethesda). 2016 Dec 7;6(12):4167-4174. doi: 10.1534/g3.116.036228.

25.

Mapping a multiplexed zoo of mRNA expression.

Choi HM, Calvert CR, Husain N, Huss D, Barsi JC, Deverman BE, Hunter RC, Kato M, Lee SM, Abelin AC, Rosenthal AZ, Akbari OS, Li Y, Hay BA, Sternberg PW, Patterson PH, Davidson EH, Mazmanian SK, Prober DA, van de Rijn M, Leadbetter JR, Newman DK, Readhead C, Bronner ME, Wold B, Lansford R, Sauka-Spengler T, Fraser SE, Pierce NA.

Development. 2016 Oct 1;143(19):3632-3637.

26.

The tubulin repertoire of C. elegans sensory neurons and its context-dependent role in process outgrowth.

Lockhead D, Schwarz EM, O'Hagan R, Bellotti S, Krieg M, Barr MM, Dunn AR, Sternberg PW, Goodman MB.

Mol Biol Cell. 2016 Sep 21. pii: mbc.E16-06-0473. [Epub ahead of print]

27.

Tissue enrichment analysis for C. elegans genomics.

Angeles-Albores D, N Lee RY, Chan J, Sternberg PW.

BMC Bioinformatics. 2016 Sep 13;17(1):366. doi: 10.1186/s12859-016-1229-9.

28.

C. elegans Stress-Induced Sleep Emerges from the Collective Action of Multiple Neuropeptides.

Nath RD, Chow ES, Wang H, Schwarz EM, Sternberg PW.

Curr Biol. 2016 Sep 26;26(18):2446-2455. doi: 10.1016/j.cub.2016.07.048. Epub 2016 Aug 18.

29.

Analyses of Compact Trichinella Kinomes Reveal a MOS-Like Protein Kinase with a Unique N-Terminal Domain.

Stroehlein AJ, Young ND, Korhonen PK, Chang BC, Sternberg PW, La Rosa G, Pozio E, Gasser RB.

G3 (Bethesda). 2016 Sep 8;6(9):2847-56. doi: 10.1534/g3.116.032961.

30.

CAP protein superfamily members in Toxocara canis.

Stroehlein AJ, Young ND, Hall RS, Korhonen PK, Hofmann A, Sternberg PW, Jabbar A, Gasser RB.

Parasit Vectors. 2016 Jun 24;9(1):360. doi: 10.1186/s13071-016-1642-y.

31.

Anchor cell signaling and vulval precursor cell positioning establish a reproducible spatial context during C. elegans vulval induction.

Grimbert S, Tietze K, Barkoulas M, Sternberg PW, Félix MA, Braendle C.

Dev Biol. 2016 Aug 1;416(1):123-135. doi: 10.1016/j.ydbio.2016.05.036. Epub 2016 Jun 8.

32.

Mating pheromones of Nematoda: olfactory signaling with physiological consequences.

Leighton DH, Sternberg PW.

Curr Opin Neurobiol. 2016 Jun;38:119-24. doi: 10.1016/j.conb.2016.04.008. Epub 2016 May 21. Review.

PMID:
27213246
33.

Contrasting responses within a single neuron class enable sex-specific attraction in Caenorhabditis elegans.

Narayan A, Venkatachalam V, Durak O, Reilly DK, Bose N, Schroeder FC, Samuel AD, Srinivasan J, Sternberg PW.

Proc Natl Acad Sci U S A. 2016 Mar 8;113(10):E1392-401. doi: 10.1073/pnas.1600786113. Epub 2016 Feb 22.

34.

Muscle Logic: New Knowledge Resource for Anatomy Enables Comprehensive Searches of the Literature on the Feeding Muscles of Mammals.

Druzinsky RE, Balhoff JP, Crompton AW, Done J, German RZ, Haendel MA, Herrel A, Herring SW, Lapp H, Mabee PM, Muller HM, Mungall CJ, Sternberg PW, Van Auken K, Vinyard CJ, Williams SH, Wall CE.

PLoS One. 2016 Feb 12;11(2):e0149102. doi: 10.1371/journal.pone.0149102. eCollection 2016.

35.

Dictyocaulus viviparus genome, variome and transcriptome elucidate lungworm biology and support future intervention.

McNulty SN, Strübe C, Rosa BA, Martin JC, Tyagi R, Choi YJ, Wang Q, Hallsworth Pepin K, Zhang X, Ozersky P, Wilson RK, Sternberg PW, Gasser RB, Mitreva M.

Sci Rep. 2016 Feb 9;6:20316. doi: 10.1038/srep20316.

36.

Reconstruction of the insulin-like signalling pathway of Haemonchus contortus.

Mohandas N, Hu M, Stroehlein AJ, Young ND, Sternberg PW, Lok JB, Gasser RB.

Parasit Vectors. 2016 Feb 3;9:64. doi: 10.1186/s13071-016-1341-8.

37.

Phylogenomic and biogeographic reconstruction of the Trichinella complex.

Korhonen PK, Pozio E, La Rosa G, Chang BC, Koehler AV, Hoberg EP, Boag PR, Tan P, Jex AR, Hofmann A, Sternberg PW, Young ND, Gasser RB.

Nat Commun. 2016 Feb 1;7:10513. doi: 10.1038/ncomms10513.

38.

The Haemonchus contortus kinome--a resource for fundamental molecular investigations and drug discovery.

Stroehlein AJ, Young ND, Korhonen PK, Jabbar A, Hofmann A, Sternberg PW, Gasser RB.

Parasit Vectors. 2015 Dec 8;8:623. doi: 10.1186/s13071-015-1231-5.

39.

Defining the Schistosoma haematobium kinome enables the prediction of essential kinases as anti-schistosome drug targets.

Stroehlein AJ, Young ND, Jex AR, Sternberg PW, Tan P, Boag PR, Hofmann A, Gasser RB.

Sci Rep. 2015 Dec 4;5:17759. doi: 10.1038/srep17759.

40.

WormBase 2016: expanding to enable helminth genomic research.

Howe KL, Bolt BJ, Cain S, Chan J, Chen WJ, Davis P, Done J, Down T, Gao S, Grove C, Harris TW, Kishore R, Lee R, Lomax J, Li Y, Muller HM, Nakamura C, Nuin P, Paulini M, Raciti D, Schindelman G, Stanley E, Tuli MA, Van Auken K, Wang D, Wang X, Williams G, Wright A, Yook K, Berriman M, Kersey P, Schedl T, Stein L, Sternberg PW.

Nucleic Acids Res. 2016 Jan 4;44(D1):D774-80. doi: 10.1093/nar/gkv1217. Epub 2015 Nov 17.

41.

Sex Attraction and Mating in Bursaphelenchus okinawaensis and B. xylophilus.

Shinya R, Chen A, Sternberg PW.

J Nematol. 2015 Sep;47(3):176-83.

42.

Comparative genomics of Steinernema reveals deeply conserved gene regulatory networks.

Dillman AR, Macchietto M, Porter CF, Rogers A, Williams B, Antoshechkin I, Lee MM, Goodwin Z, Lu X, Lewis EE, Goodrich-Blair H, Stock SP, Adams BJ, Sternberg PW, Mortazavi A.

Genome Biol. 2015 Sep 21;16:200. doi: 10.1186/s13059-015-0746-6.

43.

The barber's pole worm CAP protein superfamily--A basis for fundamental discovery and biotechnology advances.

Mohandas N, Young ND, Jabbar A, Korhonen PK, Koehler AV, Amani P, Hall RS, Sternberg PW, Jex AR, Hofmann A, Gasser RB.

Biotechnol Adv. 2015 Dec;33(8):1744-54. doi: 10.1016/j.biotechadv.2015.07.003. Epub 2015 Jul 31. Review.

PMID:
26239368
44.

Genetically Encoded Spy Peptide Fusion System to Detect Plasma Membrane-Localized Proteins In Vivo.

Bedbrook CN, Kato M, Ravindra Kumar S, Lakshmanan A, Nath RD, Sun F, Sternberg PW, Arnold FH, Gradinaru V.

Chem Biol. 2015 Aug 20;22(8):1108-21. doi: 10.1016/j.chembiol.2015.06.020. Epub 2015 Jul 23.

45.

Conserved nematode signalling molecules elicit plant defenses and pathogen resistance.

Manosalva P, Manohar M, von Reuss SH, Chen S, Koch A, Kaplan F, Choe A, Micikas RJ, Wang X, Kogel KH, Sternberg PW, Williamson VM, Schroeder FC, Klessig DF.

Nat Commun. 2015 Jul 23;6:7795. doi: 10.1038/ncomms8795.

46.

Morphologically defined sub-stages of C. elegans vulval development in the fourth larval stage.

Mok DZ, Sternberg PW, Inoue T.

BMC Dev Biol. 2015 Jun 12;15:26. doi: 10.1186/s12861-015-0076-7.

47.

Cracking the nodule worm code advances knowledge of parasite biology and biotechnology to tackle major diseases of livestock.

Tyagi R, Joachim A, Ruttkowski B, Rosa BA, Martin JC, Hallsworth-Pepin K, Zhang X, Ozersky P, Wilson RK, Ranganathan S, Sternberg PW, Gasser RB, Mitreva M.

Biotechnol Adv. 2015 Nov 1;33(6 Pt 1):980-91. doi: 10.1016/j.biotechadv.2015.05.004. Epub 2015 May 27. Review.

48.

Erratum: the genome and transcriptome of the zoonotic hookworm Ancylostoma ceylanicum identify infection-specific gene families.

Schwarz EM, Hu Y, Antoshechkin I, Miller MM, Sternberg PW, Aroian RV.

Nat Genet. 2015 Jun;47(6):689. doi: 10.1038/ng0615-689a. No abstract available.

PMID:
26018900
49.

Flatworms have lost the right open reading frame kinase 3 gene during evolution.

Breugelmans B, Ansell BR, Young ND, Amani P, Stroehlein AJ, Sternberg PW, Jex AR, Boag PR, Hofmann A, Gasser RB.

Sci Rep. 2015 May 15;5:9417. doi: 10.1038/srep09417.

50.

The genome and transcriptome of the zoonotic hookworm Ancylostoma ceylanicum identify infection-specific gene families.

Schwarz EM, Hu Y, Antoshechkin I, Miller MM, Sternberg PW, Aroian RV.

Nat Genet. 2015 Apr;47(4):416-22. doi: 10.1038/ng.3237. Epub 2015 Mar 2. Erratum in: Nat Genet. 2015 Jun;47(6):689.

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