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Items: 1 to 50 of 466

1.

Computation Resources for Molecular Biology: Special Issue 2018.

Sternberg MJE, Yosef N.

J Mol Biol. 2018 May 31. pii: S0022-2836(18)30537-0. doi: 10.1016/j.jmb.2018.05.041. [Epub ahead of print] No abstract available.

PMID:
29860026
2.

EzMol: A Web Server Wizard for the Rapid Visualization and Image Production of Protein and Nucleic Acid Structures.

Reynolds CR, Islam SA, Sternberg MJE.

J Mol Biol. 2018 Jan 31. pii: S0022-2836(18)30039-1. doi: 10.1016/j.jmb.2018.01.013. [Epub ahead of print]

3.

PhenoRank: reducing study bias in gene prioritization through simulation.

Cornish AJ, David A, Sternberg MJE.

Bioinformatics. 2018 Jun 15;34(12):2087-2095. doi: 10.1093/bioinformatics/bty028.

4.

In Silico Analysis of the Small Molecule Content of Outer Membrane Vesicles Produced by Bacteroides thetaiotaomicron Indicates an Extensive Metabolic Link between Microbe and Host.

Bryant WA, Stentz R, Le Gall G, Sternberg MJE, Carding SR, Wilhelm T.

Front Microbiol. 2017 Dec 8;8:2440. doi: 10.3389/fmicb.2017.02440. eCollection 2017.

5.

Vascular thrombus imaging in vivo via near-infrared fluorescent nanodiamond particles bioengineered with the disintegrin bitistatin (Part II).

Gerstenhaber JA, Barone FC, Marcinkiewicz C, Li J, Shiloh AO, Sternberg M, Lelkes PI, Feuerstein G.

Int J Nanomedicine. 2017 Nov 24;12:8471-8482. doi: 10.2147/IJN.S146946. eCollection 2017.

6.

Properties of human genes guided by their enrichment in rare and common variants.

Alhuzimi E, Leal LG, Sternberg MJE, David A.

Hum Mutat. 2018 Mar;39(3):365-370. doi: 10.1002/humu.23377. Epub 2017 Dec 21.

7.

Structure-based prediction of protein allostery.

Greener JG, Sternberg MJ.

Curr Opin Struct Biol. 2017 Nov 5;50:1-8. doi: 10.1016/j.sbi.2017.10.002. [Epub ahead of print] Review.

8.

Species richness effects on grassland recovery from drought depend on community productivity in a multisite experiment.

Kreyling J, Dengler J, Walter J, Velev N, Ugurlu E, Sopotlieva D, Ransijn J, Picon-Cochard C, Nijs I, Hernandez P, Güler B, von Gillhaussen P, De Boeck HJ, Bloor JMG, Berwaers S, Beierkuhnlein C, Arfin Khan MAS, Apostolova I, Altan Y, Zeiter M, Wellstein C, Sternberg M, Stampfli A, Campetella G, Bartha S, Bahn M, Jentsch A.

Ecol Lett. 2017 Nov;20(11):1405-1413. doi: 10.1111/ele.12848. Epub 2017 Sep 20.

PMID:
28941071
9.

ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology.

Waese J, Fan J, Pasha A, Yu H, Fucile G, Shi R, Cumming M, Kelley LA, Sternberg MJ, Krishnakumar V, Ferlanti E, Miller J, Town C, Stuerzlinger W, Provart NJ.

Plant Cell. 2017 Aug;29(8):1806-1821. doi: 10.1105/tpc.17.00073. Epub 2017 Aug 14.

10.
11.

Syringomyelia.

Sternberg ML, Gunter ML.

J Emerg Med. 2017 Aug;53(2):e31-e32. doi: 10.1016/j.jemermed.2017.04.029. Epub 2017 Jun 23. No abstract available.

PMID:
28651957
12.

Bitistatin-functionalized fluorescent nanodiamond particles specifically bind to purified human platelet integrin receptor αIIbβ3 and activated platelets.

Marcinkiewicz C, Gerstenhaber JA, Sternberg M, Lelkes PI, Feuerstein G.

Int J Nanomedicine. 2017 May 15;12:3711-3720. doi: 10.2147/IJN.S134128. eCollection 2017.

13.

Iodine-Pseudohalogen Ionic Liquid-Based Electrolytes for Quasi-Solid-State Dye-Sensitized Solar Cells.

Lennert A, Sternberg M, Meyer K, Costa RD, Guldi DM.

ACS Appl Mater Interfaces. 2017 Oct 4;9(39):33437-33445. doi: 10.1021/acsami.7b01522. Epub 2017 Apr 27.

PMID:
28448122
14.

Multiple imputation to evaluate the impact of an assay change in national surveys.

Sternberg M.

Stat Med. 2017 Jul 30;36(17):2697-2719. doi: 10.1002/sim.7302. Epub 2017 Apr 16.

15.

Effects of preanalytical factors on hemoglobin measurement: A comparison of two HemoCue® point-of-care analyzers.

Whitehead RD Jr, Zhang M, Sternberg MR, Schleicher RL, Drammeh B, Mapango C, Pfeiffer CM.

Clin Biochem. 2017 Jun;50(9):513-520. doi: 10.1016/j.clinbiochem.2017.04.006. Epub 2017 Apr 12.

16.

Search for rare protein altering variants influencing susceptibility to multiple myeloma.

Scales M, Chubb D, Dobbins SE, Johnson DC, Li N, Sternberg MJ, Weinhold N, Stein C, Jackson G, Davies FE, Walker BA, Wardell CP, Houlston RS, Morgan GJ.

Oncotarget. 2017 May 30;8(22):36203-36210. doi: 10.18632/oncotarget.15874.

17.

Predicting Protein Dynamics and Allostery Using Multi-Protein Atomic Distance Constraints.

Greener JG, Filippis I, Sternberg MJE.

Structure. 2017 Mar 7;25(3):546-558. doi: 10.1016/j.str.2017.01.008. Epub 2017 Feb 9.

18.

Thienopyrimidinone Based Sirtuin-2 (SIRT2)-Selective Inhibitors Bind in the Ligand Induced Selectivity Pocket.

Sundriyal S, Moniot S, Mahmud Z, Yao S, Di Fruscia P, Reynolds CR, Dexter DT, Sternberg MJ, Lam EW, Steegborn C, Fuchter MJ.

J Med Chem. 2017 Mar 9;60(5):1928-1945. doi: 10.1021/acs.jmedchem.6b01690. Epub 2017 Feb 15.

19.

Computation Resources for Molecular Biology: Special Issue 2017.

Ostankovitch MI, Sternberg MJ.

J Mol Biol. 2017 Feb 3;429(3):345-347. doi: 10.1016/j.jmb.2016.12.018. Epub 2016 Dec 23. No abstract available.

20.

k-SLAM: accurate and ultra-fast taxonomic classification and gene identification for large metagenomic data sets.

Ainsworth D, Sternberg MJE, Raczy C, Butcher SA.

Nucleic Acids Res. 2017 Feb 28;45(4):1649-1656. doi: 10.1093/nar/gkw1248.

21.

Landscape of Pleiotropic Proteins Causing Human Disease: Structural and System Biology Insights.

Ittisoponpisan S, Alhuzimi E, Sternberg MJ, David A.

Hum Mutat. 2017 Mar;38(3):289-296. doi: 10.1002/humu.23155. Epub 2017 Jan 11.

22.

Osteochondroma.

Sternberg ML, Sexton JA.

J Emerg Med. 2016 Dec;51(6):e145-e146. doi: 10.1016/j.jemermed.2016.07.105. Epub 2016 Oct 4. No abstract available.

PMID:
27712895
23.

Applying inappropriate cutoffs leads to misinterpretation of folate status in the US population.

Pfeiffer CM, Sternberg MR, Hamner HC, Crider KS, Lacher DA, Rogers LM, Bailey RL, Yetley EA.

Am J Clin Nutr. 2016 Dec;104(6):1607-1615. Epub 2016 Sep 28.

24.

An expanded evaluation of protein function prediction methods shows an improvement in accuracy.

Jiang Y, Oron TR, Clark WT, Bankapur AR, D'Andrea D, Lepore R, Funk CS, Kahanda I, Verspoor KM, Ben-Hur A, Koo da CE, Penfold-Brown D, Shasha D, Youngs N, Bonneau R, Lin A, Sahraeian SM, Martelli PL, Profiti G, Casadio R, Cao R, Zhong Z, Cheng J, Altenhoff A, Skunca N, Dessimoz C, Dogan T, Hakala K, Kaewphan S, Mehryary F, Salakoski T, Ginter F, Fang H, Smithers B, Oates M, Gough J, Törönen P, Koskinen P, Holm L, Chen CT, Hsu WL, Bryson K, Cozzetto D, Minneci F, Jones DT, Chapman S, Bkc D, Khan IK, Kihara D, Ofer D, Rappoport N, Stern A, Cibrian-Uhalte E, Denny P, Foulger RE, Hieta R, Legge D, Lovering RC, Magrane M, Melidoni AN, Mutowo-Meullenet P, Pichler K, Shypitsyna A, Li B, Zakeri P, ElShal S, Tranchevent LC, Das S, Dawson NL, Lee D, Lees JG, Sillitoe I, Bhat P, Nepusz T, Romero AE, Sasidharan R, Yang H, Paccanaro A, Gillis J, Sedeño-Cortés AE, Pavlidis P, Feng S, Cejuela JM, Goldberg T, Hamp T, Richter L, Salamov A, Gabaldon T, Marcet-Houben M, Supek F, Gong Q, Ning W, Zhou Y, Tian W, Falda M, Fontana P, Lavezzo E, Toppo S, Ferrari C, Giollo M, Piovesan D, Tosatto SC, Del Pozo A, Fernández JM, Maietta P, Valencia A, Tress ML, Benso A, Di Carlo S, Politano G, Savino A, Rehman HU, Re M, Mesiti M, Valentini G, Bargsten JW, van Dijk AD, Gemovic B, Glisic S, Perovic V, Veljkovic V, Veljkovic N, Almeida-E-Silva DC, Vencio RZ, Sharan M, Vogel J, Kansakar L, Zhang S, Vucetic S, Wang Z, Sternberg MJ, Wass MN, Huntley RP, Martin MJ, O'Donovan C, Robinson PN, Moreau Y, Tramontano A, Babbitt PC, Brenner SE, Linial M, Orengo CA, Rost B, Greene CS, Mooney SD, Friedberg I, Radivojac P.

Genome Biol. 2016 Sep 7;17(1):184. doi: 10.1186/s13059-016-1037-6.

25.

Three-Dimensional Model of Human Nicotinamide Nucleotide Transhydrogenase (NNT) and Sequence-Structure Analysis of its Disease-Causing Variations.

Metherell LA, Guerra-Assunção JA, Sternberg MJ, David A.

Hum Mutat. 2016 Oct;37(10):1074-84. doi: 10.1002/humu.23046. Epub 2016 Aug 8.

26.

The vitamin D status of the US population from 1988 to 2010 using standardized serum concentrations of 25-hydroxyvitamin D shows recent modest increases.

Schleicher RL, Sternberg MR, Lacher DA, Sempos CT, Looker AC, Durazo-Arvizu RA, Yetley EA, Chaudhary-Webb M, Maw KL, Pfeiffer CM, Johnson CL.

Am J Clin Nutr. 2016 Aug;104(2):454-61. doi: 10.3945/ajcn.115.127985. Epub 2016 Jul 6.

27.

A Method-bridging Study for Serum 25-hydroxyvitamin D to Standardize Historical Radioimmunoassay Data to Liquid Chromatography-Tandem Mass Spectrometry.

Schleicher RL, Sternberg MR, Lacher DA, Sempos CT, Looker AC, Durazo-Arvizu RA, Yetley EA, Chaudhary-Webb M, Maw KL, Pfeiffer CM, Johnson C.

Natl Health Stat Report. 2016 Apr 25;(93):1-16.

28.

IGSF10 mutations dysregulate gonadotropin-releasing hormone neuronal migration resulting in delayed puberty.

Howard SR, Guasti L, Ruiz-Babot G, Mancini A, David A, Storr HL, Metherell LA, Sternberg MJ, Cabrera CP, Warren HR, Barnes MR, Quinton R, de Roux N, Young J, Guiochon-Mantel A, Wehkalampi K, André V, Gothilf Y, Cariboni A, Dunkel L.

EMBO Mol Med. 2016 Jun 1;8(6):626-42. doi: 10.15252/emmm.201606250. Print 2016 Jun.

29.

National Estimates of Serum Total 25-Hydroxyvitamin D and Metabolite Concentrations Measured by Liquid Chromatography-Tandem Mass Spectrometry in the US Population during 2007-2010.

Schleicher RL, Sternberg MR, Looker AC, Yetley EA, Lacher DA, Sempos CT, Taylor CL, Durazo-Arvizu RA, Maw KL, Chaudhary-Webb M, Johnson CL, Pfeiffer CM.

J Nutr. 2016 May;146(5):1051-61. doi: 10.3945/jn.115.227728. Epub 2016 Apr 6.

30.

Few multiyear precipitation-reduction experiments find a shift in the productivity-precipitation relationship.

Estiarte M, Vicca S, Peñuelas J, Bahn M, Beier C, Emmett BA, Fay PA, Hanson PJ, Hasibeder R, Kigel J, Kröel-Dulay G, Larsen KS, Lellei-Kovács E, Limousin JM, Ogaya R, Ourcival JM, Reinsch S, Sala OE, Schmidt IK, Sternberg M, Tielbörger K, Tietema A, Janssens IA.

Glob Chang Biol. 2016 Jul;22(7):2570-81. doi: 10.1111/gcb.13269. Epub 2016 Apr 6.

PMID:
26946322
31.

Computation Resources for Molecular Biology: A Special Issue.

Sternberg MJE, Ostankovitch MI.

J Mol Biol. 2016 Feb 22;428(4):669-670. doi: 10.1016/j.jmb.2016.02.001. Epub 2016 Feb 3. No abstract available.

32.

Response to Comment on "Worldwide evidence of a unimodal relationship between productivity and plant species richness".

Pither J, Fraser LH, Jentsch A, Sternberg M, Zobel M, Cahill J, Beierkuhnlein C, Bartha S, Bennett JA, Boldgiv B, Brown LR, Cabido M, Campetella G, Carlyle CN, Chelli S, Csergő AM, Diaz S, Enrico L, Ensing D, Fidelis A, Garris HW, Henry HA, Höhn M, Klironomos J, Koorem K, Lawrence-Lodge R, Manning P, Mitchell RJ, Moora M, Pillar VD, Stotz GC, Sugiyama S, Szentes S, Tungalag R, Undrakhbold S, Wellstein C, Zupo T.

Science. 2016 Jan 29;351(6272):457. doi: 10.1126/science.aad8019.

33.

Response to Comment on "Worldwide evidence of a unimodal relationship between productivity and plant species richness".

Fraser LH, Pärtel M, Pither J, Jentsch A, Sternberg M, Zobel M.

Science. 2015 Dec 4;350(6265):1177. doi: 10.1126/science.aad4874.

PMID:
26785471
34.

Incorporating Virtual Reactions into a Logic-based Ligand-based Virtual Screening Method to Discover New Leads.

Reynolds CR, Muggleton SH, Sternberg MJ.

Mol Inform. 2015 Sep;34(9):615-625. Epub 2015 Mar 20.

35.

Limit on Tensor Currents from ^{8}Li β Decay.

Sternberg MG, Segel R, Scielzo ND, Savard G, Clark JA, Bertone PF, Buchinger F, Burkey M, Caldwell S, Chaudhuri A, Crawford JE, Deibel CM, Greene J, Gulick S, Lascar D, Levand AF, Li G, Pérez Galván A, Sharma KS, Van Schelt J, Yee RM, Zabransky BJ.

Phys Rev Lett. 2015 Oct 30;115(18):182501. doi: 10.1103/PhysRevLett.115.182501. Epub 2015 Oct 28.

PMID:
26565463
36.

PhyreStorm: A Web Server for Fast Structural Searches Against the PDB.

Mezulis S, Sternberg MJE, Kelley LA.

J Mol Biol. 2016 Feb 22;428(4):702-708. doi: 10.1016/j.jmb.2015.10.017. Epub 2015 Oct 27.

37.

Skin collagen pentosidine and fluorescence in diabetes were predictors of retinopathy progression and creatininemia increase already 6years after punch-biopsy.

Sternberg M, M'bemba J, Urios P, Borsos AM, Selam JL, Peyroux J, Slama G.

Clin Biochem. 2016 Feb;49(3):225-31. doi: 10.1016/j.clinbiochem.2015.10.011. Epub 2015 Oct 24.

PMID:
26506116
38.

AlloPred: prediction of allosteric pockets on proteins using normal mode perturbation analysis.

Greener JG, Sternberg MJ.

BMC Bioinformatics. 2015 Oct 23;16:335. doi: 10.1186/s12859-015-0771-1.

39.

Robotic axial lower leg testing: repeatability and reproducibility.

Branch T, Stinton S, Sternberg M, Hutton W, Lavoie F, Guier C, Neyret P.

Knee Surg Sports Traumatol Arthrosc. 2015 Oct;23(10):2892-9. doi: 10.1007/s00167-015-3768-4. Epub 2015 Sep 10.

40.

Exploring the cellular basis of human disease through a large-scale mapping of deleterious genes to cell types.

Cornish AJ, Filippis I, David A, Sternberg MJ.

Genome Med. 2015 Sep 1;7:95. doi: 10.1186/s13073-015-0212-9.

41.

The Origin of Cultivation and Proto-Weeds, Long Before Neolithic Farming.

Snir A, Nadel D, Groman-Yaroslavski I, Melamed Y, Sternberg M, Bar-Yosef O, Weiss E.

PLoS One. 2015 Jul 22;10(7):e0131422. doi: 10.1371/journal.pone.0131422. eCollection 2015.

42.

Plant ecology. Worldwide evidence of a unimodal relationship between productivity and plant species richness.

Fraser LH, Pither J, Jentsch A, Sternberg M, Zobel M, Askarizadeh D, Bartha S, Beierkuhnlein C, Bennett JA, Bittel A, Boldgiv B, Boldrini II, Bork E, Brown L, Cabido M, Cahill J, Carlyle CN, Campetella G, Chelli S, Cohen O, Csergo AM, Díaz S, Enrico L, Ensing D, Fidelis A, Fridley JD, Foster B, Garris H, Goheen JR, Henry HA, Hohn M, Jouri MH, Klironomos J, Koorem K, Lawrence-Lodge R, Long R, Manning P, Mitchell R, Moora M, Müller SC, Nabinger C, Naseri K, Overbeck GE, Palmer TM, Parsons S, Pesek M, Pillar VD, Pringle RM, Roccaforte K, Schmidt A, Shang Z, Stahlmann R, Stotz GC, Sugiyama S, Szentes S, Thompson D, Tungalag R, Undrakhbold S, van Rooyen M, Wellstein C, Wilson JB, Zupo T.

Science. 2015 Jul 17;349(6245):302-5. doi: 10.1126/science.aab3916.

43.

The Contribution of Missense Mutations in Core and Rim Residues of Protein-Protein Interfaces to Human Disease.

David A, Sternberg MJ.

J Mol Biol. 2015 Aug 28;427(17):2886-98. doi: 10.1016/j.jmb.2015.07.004. Epub 2015 Jul 11.

44.

Population Size Estimates for Men who Have Sex with Men and Persons who Inject Drugs.

Oster AM, Sternberg M, Lansky A, Broz D, Wejnert C, Paz-Bailey G.

J Urban Health. 2015 Aug;92(4):733-43. doi: 10.1007/s11524-015-9970-3.

45.

Partial protein domains: evolutionary insights and bioinformatics challenges.

Kelley LA, Sternberg MJ.

Genome Biol. 2015 May 19;16:100. doi: 10.1186/s13059-015-0663-8.

46.

Single-Electron Detection and Spectroscopy via Relativistic Cyclotron Radiation.

Asner DM, Bradley RF, de Viveiros L, Doe PJ, Fernandes JL, Fertl M, Finn EC, Formaggio JA, Furse D, Jones AM, Kofron JN, LaRoque BH, Leber M, McBride EL, Miller ML, Mohanmurthy P, Monreal B, Oblath NS, Robertson RG, Rosenberg LJ, Rybka G, Rysewyk D, Sternberg MG, Tedeschi JR, Thümmler T, VanDevender BA, Woods NL; Project 8 Collaboration.

Phys Rev Lett. 2015 Apr 24;114(16):162501. Epub 2015 Apr 20.

PMID:
25955048
47.

The Phyre2 web portal for protein modeling, prediction and analysis.

Kelley LA, Mezulis S, Yates CM, Wass MN, Sternberg MJ.

Nat Protoc. 2015 Jun;10(6):845-58. doi: 10.1038/nprot.2015.053. Epub 2015 May 7.

48.

Folate status and concentrations of serum folate forms in the US population: National Health and Nutrition Examination Survey 2011-2.

Pfeiffer CM, Sternberg MR, Fazili Z, Lacher DA, Zhang M, Johnson CL, Hamner HC, Bailey RL, Rader JI, Yamini S, Berry RJ, Yetley EA.

Br J Nutr. 2015 Jun 28;113(12):1965-77. doi: 10.1017/S0007114515001142. Epub 2015 Apr 28.

49.

Urine excretion of caffeine and select caffeine metabolites is common in the U.S. population and associated with caffeine intake.

Rybak ME, Sternberg MR, Pao CI, Ahluwalia N, Pfeiffer CM.

J Nutr. 2015 Apr;145(4):766-74. doi: 10.3945/jn.114.205476. Epub 2015 Feb 4.

50.

Unmetabolized folic acid is detected in nearly all serum samples from US children, adolescents, and adults.

Pfeiffer CM, Sternberg MR, Fazili Z, Yetley EA, Lacher DA, Bailey RL, Johnson CL.

J Nutr. 2015 Mar;145(3):520-31. doi: 10.3945/jn.114.201210. Epub 2014 Dec 10.

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