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Items: 11

1.

Commonly misunderstood parameters of NCBI BLAST and important considerations for users.

González-Pech RA, Stephens TG, Chan CX.

Bioinformatics. 2018 Dec 12. doi: 10.1093/bioinformatics/bty1018. [Epub ahead of print] No abstract available.

PMID:
30541060
2.

Core genes in diverse dinoflagellate lineages include a wealth of conserved dark genes with unknown functions.

Stephens TG, Ragan MA, Bhattacharya D, Chan CX.

Sci Rep. 2018 Nov 21;8(1):17175. doi: 10.1038/s41598-018-35620-z.

3.

Erratum: Publisher Correction: Symbiodinium genomes reveal adaptive evolution of functions related to coral-dinoflagellate symbiosis.

Liu H, Stephens TG, González-Pech RA, Beltran VH, Lapeyre B, Bongaerts P, Cooke I, Aranda M, Bourne DG, Forêt S, Miller DJ, van Oppen MJH, Voolstra CR, Ragan MA, Chan CX.

Commun Biol. 2018 Aug 23;1:126. doi: 10.1038/s42003-018-0117-4. eCollection 2018.

4.

Symbiodinium genomes reveal adaptive evolution of functions related to coral-dinoflagellate symbiosis.

Liu H, Stephens TG, González-Pech RA, Beltran VH, Lapeyre B, Bongaerts P, Cooke I, Aranda M, Bourne DG, Forêt S, Miller DJ, van Oppen MJH, Voolstra CR, Ragan MA, Chan CX.

Commun Biol. 2018 Jul 17;1:95. doi: 10.1038/s42003-018-0098-3. eCollection 2018. Erratum in: Commun Biol. 2018 Aug 23;1:126.

5.

Analysis of the Draft Genome of the Red Seaweed Gracilariopsis chorda Provides Insights into Genome Size Evolution in Rhodophyta.

Lee J, Yang EC, Graf L, Yang JH, Qiu H, Zelzion U, Chan CX, Stephens TG, Weber APM, Boo GH, Boo SM, Kim KM, Shin Y, Jung M, Lee SJ, Yim HS, Lee JH, Bhattacharya D, Yoon HS.

Mol Biol Evol. 2018 Aug 1;35(8):1869-1886. doi: 10.1093/molbev/msy081.

PMID:
29688518
6.

PhySortR: a fast, flexible tool for sorting phylogenetic trees in R.

Stephens TG, Bhattacharya D, Ragan MA, Chan CX.

PeerJ. 2016 May 12;4:e2038. doi: 10.7717/peerj.2038. eCollection 2016.

7.

Defining the rural HIV epidemic: correlations of 3 definitions--South Carolina, 2005-2011.

Weissman S, Duffus WA, Vyavaharkar M, Samantapudi AV, Shull KA, Stephens TG, Chakraborty H.

J Rural Health. 2014 Summer;30(3):275-83. doi: 10.1111/jrh.12057. Epub 2013 Dec 15.

PMID:
24329575
8.

Time to linkage to care and viro-immunologic parameters of individuals diagnosed before and after the 2006 HIV testing recommendations.

Onyeajam DJ, Eke R, Stephens TG, Duffus WA.

South Med J. 2013 Apr;106(4):257-66. doi: 10.1097/SMJ.0b013e31828d967c.

PMID:
23558414
9.

Risk factors associated with inpatient hospital utilization in HIV-positive individuals and relationship to HIV care engagement.

Kerr JC, Stephens TG, Gibson JJ, Duffus WA.

J Acquir Immune Defic Syndr. 2012 Jun 1;60(2):173-82. doi: 10.1097/QAI.0b013e31824bd55d.

PMID:
22293549
10.

HIV testing in women: missed opportunities.

Duffus WA, Davis HT, Byrd MD, Heidari K, Stephens TG, Gibson JJ.

J Womens Health (Larchmt). 2012 Feb;21(2):170-8. doi: 10.1089/jwh.2010.2655. Epub 2011 Sep 27.

PMID:
21950274
11.

Results of the Expanded HIV Risk Factor Assessment Project (EHRAP).

McDavid K, Gerstle JE 3rd, Hammett TA, Ellison DM, Stephens TG, Kirk J.

AIDS Care. 2006 Jan;18(1):77-81.

PMID:
16282081

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