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Items: 35

1.

Global DNA Methylation Patterns Can Play a Role in Defining Terroir in Grapevine (Vitis vinifera cv. Shiraz).

Xie H, Konate M, Sai N, Tesfamicael KG, Cavagnaro T, Gilliham M, Breen J, Metcalfe A, Stephen JR, De Bei R, Collins C, Lopez CMR.

Front Plant Sci. 2017 Oct 30;8:1860. doi: 10.3389/fpls.2017.01860. eCollection 2017.

2.

An expanded mammal mitogenome dataset from Southeast Asia.

Mohd Salleh F, Ramos-Madrigal J, Peñaloza F, Liu S, Mikkel-Holger SS, Riddhi PP, Martins R, Lenz D, Fickel J, Roos C, Shamsir MS, Azman MS, Burton KL, Stephen JR, Wilting A, Gilbert MTP.

Gigascience. 2017 Aug 1;6(8):1-8. doi: 10.1093/gigascience/gix053.

3.

Erratum to: Introducing BASE: the Biomes of Australian Soil Environments soil microbial diversity database.

Bissett A, Fitzgerald A, Court L, Meintjes T, Mele PM, Reith F, Dennis PG, Breed MF, Brown B, Brown MV, Brugger J, Byrne M, Caddy-Retalic S, Carmody B, Coates DJ, Correa C, Ferrari BC, Gupta VVSR, Hamonts K, Haslem A, Hugenholtz P, Karan M, Koval J, Lowe AJ, Macdonald S, McGrath L, Martin D, Morgan M, North KI, Paungfoo-Lonhienne C, Pendall E, Phillips L, Pirzl R, Powell JR, Ragan MA, Schmidt S, Seymour N, Snape I, Stephen JR, Stevens M, Tinning M, Williams K, Yeoh YK, Zammit CM, Young A.

Gigascience. 2017 May 1;6(5). doi: 10.1093/gigascience/gix021. No abstract available.

4.

Aboriginal mitogenomes reveal 50,000 years of regionalism in Australia.

Tobler R, Rohrlach A, Soubrier J, Bover P, Llamas B, Tuke J, Bean N, Abdullah-Highfold A, Agius S, O'Donoghue A, O'Loughlin I, Sutton P, Zilio F, Walshe K, Williams AN, Turney CSM, Williams M, Richards SM, Mitchell RJ, Kowal E, Stephen JR, Williams L, Haak W, Cooper A.

Nature. 2017 Apr 13;544(7649):180-184. doi: 10.1038/nature21416. Epub 2017 Mar 8.

PMID:
28273067
5.

Introducing BASE: the Biomes of Australian Soil Environments soil microbial diversity database.

Bissett A, Fitzgerald A, Court L, Meintjes T, Mele PM, Reith F, Dennis PG, Breed MF, Brown B, Brown MV, Brugger J, Byrne M, Caddy-Retalic S, Carmody B, Coates DJ, Correa C, Ferrari BC, Gupta VV, Hamonts K, Haslem A, Hugenholtz P, Karan M, Koval J, Lowe AJ, Macdonald S, McGrath L, Martin D, Morgan M, North KI, Paungfoo-Lonhienne C, Pendall E, Phillips L, Pirzl R, Powell JR, Ragan MA, Schmidt S, Seymour N, Snape I, Stephen JR, Stevens M, Tinning M, Williams K, Yeoh YK, Zammit CM, Young A.

Gigascience. 2016 May 18;5:21. doi: 10.1186/s13742-016-0126-5. eCollection 2016. Erratum in: Gigascience. 2017 May 1;6(5):.

6.

Diethyl phthalate in compost: ecotoxicological effects and response of the microbial community.

Kapanen A, Stephen JR, Brüggemann J, Kiviranta A, White DC, Itävaara M.

Chemosphere. 2007 May;67(11):2201-9. Epub 2007 Jan 26.

PMID:
17258270
7.

Bolus location at the initiation of the pharyngeal stage of swallowing in healthy older adults.

Stephen JR, Taves DH, Smith RC, Martin RE.

Dysphagia. 2005 Fall;20(4):266-72.

PMID:
16633870
8.

The evaluation of an electronic visual analogue scale system for appetite and mood.

Whybrow S, Stephen JR, Stubbs RJ.

Eur J Clin Nutr. 2006 Apr;60(4):558-60.

PMID:
16391578
9.

Microbial incorporation of 13C-labeled acetate at the field scale: detection of microbes responsible for reduction of U(VI).

Chang YJ, Long PE, Geyer R, Peacock AD, Resch CT, Sublette K, Pfiffner S, Smithgall A, Anderson RT, Vrionis HA, Stephen JR, Dayvault R, Ortiz-Bernad I, Lovley DR, White DC.

Environ Sci Technol. 2005 Dec 1;39(23):9039-48.

PMID:
16382923
10.

Molecular profiling of microbial communities associated with seeds of Beta vulgaris subsp. Vulgaris (sugar beet).

Dent KC, Stephen JR, Finch-Savage WE.

J Microbiol Methods. 2004 Jan;56(1):17-26.

PMID:
14706747
11.
12.

Species Diversity of Uncultured and Cultured Populations of Soil and Marine Ammonia Oxidizing Bacteria.

Smith Z, McCaig AE, Stephen JR, Embley TM, Prosser JI.

Microb Ecol. 2001 Oct;42(3):228-237.

PMID:
12024248
13.

Impact of herbicides on the abundance and structure of indigenous beta-subgroup ammonia-oxidizer communities in soil microcosms.

Chang YJ, Hussain AK, Stephen JR, Mullen MD, White DC, Peacock A.

Environ Toxicol Chem. 2001 Nov;20(11):2462-8.

PMID:
11699770
14.

Ammonia-oxidizing bacteria: a model for molecular microbial ecology.

Kowalchuk GA, Stephen JR.

Annu Rev Microbiol. 2001;55:485-529. Review.

PMID:
11544365
15.

Diversity and characterization of sulfate-reducing bacteria in groundwater at a uranium mill tailings site.

Chang YJ, Peacock AD, Long PE, Stephen JR, McKinley JP, Macnaughton SJ, Hussain AK, Saxton AM, White DC.

Appl Environ Microbiol. 2001 Jul;67(7):3149-60.

16.

Detection of Sphingomonas spp in soil by PCR and sphingolipid biomarker analysis.

Leung KT, Chang YJ, Gan YD, Peacock A, Macnaughton SJ, Stephen JR, Burkhalter RS, Flemming CA, White DC.

J Ind Microbiol Biotechnol. 1999 Oct;23(4-5):252-260.

PMID:
11423941
17.

Changes in the community structure of ammonia-oxidizing bacteria during secondary succession of calcareous grasslands.

Kowalchuk GA, Stienstra AW, Heilig GH, Stephen JR, Woldendorp JW.

Environ Microbiol. 2000 Feb;2(1):99-110.

PMID:
11243267
18.

Microbial characterization of a JP-4 fuel-contaminated site using a combined lipid biomarker/polymerase chain reaction--denaturing gradient gel electrophoresis (PCR-DGGE)-based approach.

Stephen JR, Chang YJ, Gan YD, Peacock A, Pfiffner SM, Barcelona MJ, White DC, Macnaughton SJ.

Environ Microbiol. 1999 Jun;1(3):231-41.

PMID:
11207742
19.

Microvariation artifacts introduced by PCR and cloning of closely related 16S rRNA gene sequences.

Speksnijder AG, Kowalchuk GA, De Jong S, Kline E, Stephen JR, Laanbroek HJ.

Appl Environ Microbiol. 2001 Jan;67(1):469-72.

20.

A survey of 16S rRNA and amoA genes related to autotrophic ammonia-oxidizing bacteria of the beta-subdivision of the class proteobacteria in contaminated groundwater.

Ivanova IA, Stephen JR, Chang YJ, Brüggemann J, Long PE, McKinley JP, Kowalchuk GA, White DC, Macnaughton SJ.

Can J Microbiol. 2000 Nov;46(11):1012-20.

PMID:
11109489
21.

Measuring soil microbial community diversity using polar lipid fatty acid and denaturing gradient gel electrophoresis data.

Hedrick DB, Peacock A, Stephen JR, Macnaughton SJ, Brüggemann J, White DC.

J Microbiol Methods. 2000 Aug;41(3):235-48.

PMID:
10958969
22.

Phylogenetic analysis of aerobic freshwater and marine enrichment cultures efficient in hydrocarbon degradation: effect of profiling method.

Chang YJ, Stephen JR, Richter AP, Venosa AD, Brüggemann J, Macnaughton SJ, Kowalchuk GA, Haines JR, Kline E, White DC.

J Microbiol Methods. 2000 Mar;40(1):19-31.

PMID:
10739339
23.

Molecular analysis of ammonia-oxidising bacteria in soil of successional grasslands of the Drentsche A (The Netherlands).

Kowalchuk GA, Stienstra AW, Heilig GH, Stephen JR, Woldendorp JW.

FEMS Microbiol Ecol. 2000 Mar 1;31(3):207-215.

24.

Competitive PCR-DGGE analysis of bacterial mixtures: an internal standard and an appraisal of template enumeration accuracy.

Brüggemann J, Stephen JR, Chang YJ, Macnaughton SJ, Kowalchuk GA, Kline E, White DC.

J Microbiol Methods. 2000 Apr;40(2):111-23.

PMID:
10699667
25.

Microbial population changes during bioremediation of an experimental oil spill.

MacNaughton SJ, Stephen JR, Venosa AD, Davis GA, Chang YJ, White DC.

Appl Environ Microbiol. 1999 Aug;65(8):3566-74.

26.

Comparative diversity of ammonia oxidizer 16S rRNA gene sequences in native, tilled, and successional soils.

Bruns MA, Stephen JR, Kowalchuk GA, Prosser JI, Paul EA.

Appl Environ Microbiol. 1999 Jul;65(7):2994-3000.

27.

Characterization of metal-resistant soil eubacteria by polymerase chain reaction--denaturing gradient gel electrophoresis with isolation of resistant strains.

Macnaughton S, Stephen JR, Chang YJ, Peacock A, Flemming CA, Leung KT, White DC.

Can J Microbiol. 1999 Feb;45(2):116-24.

PMID:
10380644
28.

Developments in terrestrial bacterial remediation of metals.

Stephen JR, Macnaughton SJ.

Curr Opin Biotechnol. 1999 Jun;10(3):230-3. Review.

PMID:
10361068
29.

Molecular analysis of ammonia-oxidizing bacteria of the beta subdivision of the class Proteobacteria in compost and composted materials.

Kowalchuk GA, Naoumenko ZS, Derikx PJ, Felske A, Stephen JR, Arkhipchenko IA.

Appl Environ Microbiol. 1999 Feb;65(2):396-403.

30.

Nitrogen cycling and community structure of proteobacterial beta-subgroup ammonia-oxidizing bacteria within polluted marine fish farm sediments.

McCaig AE, Phillips CJ, Stephen JR, Kowalchuk GA, Harvey SM, Herbert RA, Embley TM, Prosser JI.

Appl Environ Microbiol. 1999 Jan;65(1):213-20.

31.

Effect of toxic metals on indigenous soil beta-subgroup proteobacterium ammonia oxidizer community structure and protection against toxicity by inoculated metal-resistant bacteria.

Stephen JR, Chang YJ, Macnaughton SJ, Kowalchuk GA, Leung KT, Flemming CA, White DC.

Appl Environ Microbiol. 1999 Jan;65(1):95-101.

32.

Analysis of beta-subgroup proteobacterial ammonia oxidizer populations in soil by denaturing gradient gel electrophoresis analysis and hierarchical phylogenetic probing

Stephen JR, Kowalchuk GA, Bruns MAV, McCaig AE, Phillips CJ, Embley TM, Prosser JI.

Appl Environ Microbiol. 1998 Aug;64(8):2958-65.

34.

Molecular diversity of soil and marine 16S rRNA gene sequences related to beta-subgroup ammonia-oxidizing bacteria.

Stephen JR, McCaig AE, Smith Z, Prosser JI, Embley TM.

Appl Environ Microbiol. 1996 Nov;62(11):4147-54.

35.

A group II intron in a conjugative transposon from the gram-positive bacterium, Clostridium difficile.

Mullany P, Pallen M, Wilks M, Stephen JR, Tabaqchali S.

Gene. 1996 Sep 26;174(1):145-50.

PMID:
8863741

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