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Occurrence of quinolone-resistant Escherichia coli in environmental samples from a sow pool system in Switzerland.

Von Ah S, Stephan R, Zurfluh K, Sidler X, Kümmerlen D.

Schweiz Arch Tierheilkd. 2019 Jun;161(6):387-394. doi: 10.17236/sat00211.


Relevant Aspects of Clostridium estertheticum as a Specific Spoilage Organism of Vacuum-Packed Meat.

Wambui J, Stephan R.

Microorganisms. 2019 May 20;7(5). pii: E142. doi: 10.3390/microorganisms7050142. Review.


Draft Genome Sequence of Streptococcus parasuis 4253, the First Available for the Species.

Stevens MJA, Cernela N, Corti S, Stephan R.

Microbiol Resour Announc. 2019 May 2;8(18). pii: e00203-19. doi: 10.1128/MRA.00203-19.


Antimicrobial resistant and extended-spectrum β-lactamase producing Escherichia coli in common wild bird species in Switzerland.

Zurfluh K, Albini S, Mattmann P, Kindle P, Nüesch-Inderbinen M, Stephan R, Vogler BR.

Microbiologyopen. 2019 Apr 21:e845. doi: 10.1002/mbo3.845. [Epub ahead of print]


Shiga toxin-producing Escherichia coli (STEC) isolated from fecal samples of African dromedary camels.

Baschera M, Cernela N, Stevens MJA, Liljander A, Jores J, Corman VM, Nüesch-Inderbinen M, Stephan R.

One Health. 2019 Mar 7;7:100087. doi: 10.1016/j.onehlt.2019.100087. eCollection 2019 Jun.


Phenotypic and genotypic characteristics of Escherichia coli with non-susceptibility to quinolones isolated from environmental samples on pig farms.

Kindle P, Zurfluh K, Nüesch-Inderbinen M, von Ah S, Sidler X, Stephan R, Kümmerlen D.

Porcine Health Manag. 2019 Feb 28;5:9. doi: 10.1186/s40813-019-0116-y. eCollection 2019.


Characteristics of Listeria Monocytogenes Strains Persisting in a Meat Processing Facility over a 4-Year Period.

Stoller A, Stevens MJA, Stephan R, Guldimann C.

Pathogens. 2019 Mar 7;8(1). pii: E32. doi: 10.3390/pathogens8010032.


Growth potential of Listeria monocytogenes in twelve different types of RTE salads: Impact of food matrix, storage temperature and storage time.

Ziegler M, Kent D, Stephan R, Guldimann C.

Int J Food Microbiol. 2019 May 2;296:83-92. doi: 10.1016/j.ijfoodmicro.2019.01.016. Epub 2019 Feb 3.


Phenotypic and Genotypic Characterization of Clinical Isolates Belonging to the Acinetobacter calcoaceticus-Acinetobacter baumannii (ACB) Complex Isolated From Animals Treated at a Veterinary Hospital in Switzerland.

Püntener-Simmen S, Zurfluh K, Schmitt S, Stephan R, Nüesch-Inderbinen M.

Front Vet Sci. 2019 Feb 5;6:17. doi: 10.3389/fvets.2019.00017. eCollection 2019.


Staphylococcus aureus related to bovine mastitis in Switzerland: Clonal diversity, virulence gene profiles, and antimicrobial resistance of isolates collected throughout 2017.

Käppeli N, Morach M, Corti S, Eicher C, Stephan R, Johler S.

J Dairy Sci. 2019 Apr;102(4):3274-3281. doi: 10.3168/jds.2018-15317. Epub 2019 Feb 22.


Whole-genome-based phylogeny of Bacillus cytotoxicus reveals different clades within the species and provides clues on ecology and evolution.

Stevens MJA, Tasara T, Klumpp J, Stephan R, Ehling-Schulz M, Johler S.

Sci Rep. 2019 Feb 13;9(1):1984. doi: 10.1038/s41598-018-36254-x.


Massive Diversity in Whole-Genome Sequences of Streptococcus suis Strains from Infected Pigs in Switzerland.

Stevens MJA, Spoerry Serrano N, Cernela N, Schmitt S, Schrenzel J, Stephan R.

Microbiol Resour Announc. 2019 Jan 31;8(5). pii: e01656-18. doi: 10.1128/MRA.01656-18. eCollection 2019 Jan.


Detection, Isolation, and Characterization of Shiga Toxin-Producing Escherichia coli in Flour.

Kindle P, Nüesch-Inderbinen M, Cernela N, Stephan R.

J Food Prot. 2019 Jan;82(1):164-167. doi: 10.4315/0362-028X.JFP-18-256.


Atypical Hemolytic Listeria innocua Isolates Are Virulent, albeit Less than Listeria monocytogenes.

Moura A, Disson O, Lavina M, Thouvenot P, Huang L, Leclercq A, Fredriksson-Ahomaa M, Eshwar AK, Stephan R, Lecuit M.

Infect Immun. 2019 Mar 25;87(4). pii: e00758-18. doi: 10.1128/IAI.00758-18. Print 2019 Apr.


Distribution and expression of esat-6 and cfp-10 in non-tuberculous mycobacteria isolated from lymph nodes of slaughtered cattle in Switzerland.

Scherrer S, Landolt P, Friedel U, Stephan R.

J Vet Diagn Invest. 2019 Mar;31(2):217-221. doi: 10.1177/1040638718824074. Epub 2019 Jan 13.


Complete nucleotide sequences of six blaCTX-M-1-encoding plasmids from Escherichia coli isolated from urinary tract and wound infections in dogs.

Zurfluh K, Zogg AL, Klumpp J, Schmitt S, Stephan R, Nüesch-Inderbinen M.

J Glob Antimicrob Resist. 2019 Mar;16:117-119. doi: 10.1016/j.jgar.2018.12.006. Epub 2018 Dec 21. No abstract available.


Improving the quality and workflow of bacterial genome sequencing and analysis: paving the way for a Switzerland-wide molecular epidemiological surveillance platform.

Egli A, Blanc DS, Greub G, Keller PM, Lazarevic V, Lebrand A, Leib S, Neher RA, Perreten V, Ramette A, Schrenzel J, Stephan R, Wagner K, Wuethrich D, Xenarios I.

Swiss Med Wkly. 2018 Dec 15;148:w14693. doi: 10.4414/smw.2018.14693. eCollection 2018 Dec 3.


Growth potential of Listeria monocytogenes in six different RTE fruit products: impact of food matrix, storage temperature and shelf life.

Ziegler M, Rüegg S, Stephan R, Guldimann C.

Ital J Food Saf. 2018 Oct 8;7(3):7581. doi: 10.4081/ijfs.2018.7581. eCollection 2018 Sep 26.


Whole-Genome Sequences of Six Listeria monocytogenes Strains Isolated from Food.

Horlbog JA, Jang H, Gopinath G, Stephan R, Guldimann C.

Microbiol Resour Announc. 2018 Oct 11;7(14). pii: e01036-18. doi: 10.1128/MRA.01036-18. eCollection 2018 Oct.


Draft genomes of Cronobacter sakazakii strains isolated from dried spices bring unique insights into the diversity of plant-associated strains.

Jang H, Woo J, Lee Y, Negrete F, Finkelstein S, Chase HR, Addy N, Ewing L, Beaubrun JJG, Patel I, Gangiredla J, Eshwar A, Jaradat ZW, Seo K, Shabarinath S, Fanning S, Stephan R, Lehner A, Tall BD, Gopinath GR.

Stand Genomic Sci. 2018 Nov 29;13:35. doi: 10.1186/s40793-018-0339-6. eCollection 2018.


Microbial contamination of moose (Alces alces) and white-tailed deer (Odocoileus virginianus) carcasses harvested by hunters.

Sauvala M, Laaksonen S, Laukkanen-Ninios R, Jalava K, Stephan R, Fredriksson-Ahomaa M.

Food Microbiol. 2019 Apr;78:82-88. doi: 10.1016/ Epub 2018 Sep 14.


RNA Sequencing-Based Transcriptional Overview of Xerotolerance in Cronobacter sakazakii SP291.

Srikumar S, Cao Y, Yan Q, Van Hoorde K, Nguyen S, Cooney S, Gopinath GR, Tall BD, Sivasankaran SK, Lehner A, Stephan R, Fanning S.

Appl Environ Microbiol. 2019 Jan 23;85(3). pii: e01993-18. doi: 10.1128/AEM.01993-18. Print 2019 Feb 1.


Case of the month: What's your diagnosis?

Peterhans S, Ghielmetti G, Botta C, Friedel U, Hilbe M, Schneeberger M, Stephan R.

Schweiz Arch Tierheilkd. 2018 Nov;160(11):673-675. doi: 10.17236/sat00185. No abstract available.


Neuropsychological functioning in opioid use disorder: A research synthesis and meta-analysis.

Wollman SC, Hauson AO, Hall MG, Connors EJ, Allen KE, Stern MJ, Stephan RA, Kimmel CL, Sarkissians S, Barlet BD, Flora-Tostado C.

Am J Drug Alcohol Abuse. 2019;45(1):11-25. doi: 10.1080/00952990.2018.1517262. Epub 2018 Oct 25.


First report of a blaNDM-5-harbouring Escherichia coli ST167 isolated from a wound infection in a dog in Switzerland.

Peterhans S, Stevens MJA, Nüesch-Inderbinen M, Schmitt S, Stephan R, Zurfluh K.

J Glob Antimicrob Resist. 2018 Dec;15:226-227. doi: 10.1016/j.jgar.2018.10.013. Epub 2018 Oct 16. No abstract available.


Enterotoxin Production of Bacillus thuringiensis Isolates From Biopesticides, Foods, and Outbreaks.

Johler S, Kalbhenn EM, Heini N, Brodmann P, Gautsch S, Bağcioğlu M, Contzen M, Stephan R, Ehling-Schulz M.

Front Microbiol. 2018 Aug 23;9:1915. doi: 10.3389/fmicb.2018.01915. eCollection 2018.


Surviving host - and food relevant stresses: phenotype of L. monocytogenes strains isolated from food and clinical sources.

Horlbog JA, Kent D, Stephan R, Guldimann C.

Sci Rep. 2018 Aug 28;8(1):12931. doi: 10.1038/s41598-018-30723-z.


Complete and assembled genome sequence of an NDM-5- and CTX-M-15-producing Escherichia coli sequence type 617 isolated from wastewater in Switzerland.

Zurfluh K, Stevens MJA, Stephan R, Nüesch-Inderbinen M.

J Glob Antimicrob Resist. 2018 Dec;15:105-106. doi: 10.1016/j.jgar.2018.08.015. Epub 2018 Aug 24.


Characterization of Bacillus cereus group isolates from powdered food products.

Heini N, Stephan R, Ehling-Schulz M, Johler S.

Int J Food Microbiol. 2018 Oct 20;283:59-64. doi: 10.1016/j.ijfoodmicro.2018.06.019. Epub 2018 Jun 28.


First report of an mcr-1-harboring Salmonella enterica subsp. enterica serotype 4,5,12:i:- strain isolated from blood of a patient in Switzerland.

Carroll LM, Zurfluh K, Jang H, Gopinath G, Nüesch-Inderbinen M, Poirel L, Nordmann P, Stephan R, Guldimann C.

Int J Antimicrob Agents. 2018 Nov;52(5):740-741. doi: 10.1016/j.ijantimicag.2018.08.003. Epub 2018 Aug 10. No abstract available.


Species Distribution and Antimicrobial Profiles of Enterococcus spp. Isolates from Kenyan Small and Medium Enterprise Slaughterhouses.

Wambui J, Tasara T, Njage PMK, Stephan R.

J Food Prot. 2018 Sep;81(9):1445-1449. doi: 10.4315/0362-028X.JFP-18-130.


Microbiological quality and presence of foodborne pathogens in raw milk cheeses and raw meat products marketed at farm level in Switzerland.

Serrano NS, Zweifel C, Corti S, Stephan R.

Ital J Food Saf. 2018 Jul 3;7(2):7337. doi: 10.4081/ijfs.2018.7337. eCollection 2018 Jul 3.


Toxin genes and cytotoxicity levels detected in Bacillus cereus isolates collected from cooked food products delivered by Swiss Army catering facilities.

Heini N, Stephan R, Johler S.

Ital J Food Saf. 2018 Jul 3;7(2):7323. doi: 10.4081/ijfs.2018.7323. eCollection 2018 Jul 3.


Serotypes and virulence profiles of Shiga toxin-producing Escherichia coli strains isolated during 2017 from human infections in Switzerland.

Nüesch-Inderbinen M, Morach M, Cernela N, Althaus D, Jost M, Mäusezahl M, Bloomberg G, Stephan R.

Int J Med Microbiol. 2018 Oct;308(7):933-939. doi: 10.1016/j.ijmm.2018.06.011. Epub 2018 Jun 30.


Interaction of matrix metalloproteinase-9 and Zpx in Cronobacter turicensis LMG 23827T mediated infections in the zebrafish model.

Eshwar AK, Wolfrum N, Stephan R, Fanning S, Lehner A.

Cell Microbiol. 2018 Nov;20(11):e12888. doi: 10.1111/cmi.12888. Epub 2018 Aug 3.


Whole-Genome Shotgun Sequencing of Three Listeria monocytogenes Strains Isolated from a Ready-to-Eat Salad-Producing Facility in Switzerland.

Ziegler M, Jang H, Gopinath G, Horlbog JA, Stephan R, Guldimann C.

Genome Announc. 2018 Jun 28;6(26). pii: e00547-18. doi: 10.1128/genomeA.00547-18.


Genetic characterization of Shiga toxin producing Escherichia coli belonging to the emerging hybrid pathotype O80:H2 isolated from humans 2010-2017 in Switzerland.

Nüesch-Inderbinen M, Cernela N, Wüthrich D, Egli A, Stephan R.

Int J Med Microbiol. 2018 Jul;308(5):534-538. doi: 10.1016/j.ijmm.2018.05.007. Epub 2018 Jun 1.


Draft Genome Sequences of Enterococcus mundtii Strains Isolated from Beef Slaughterhouses in Kenya.

Wambui J, Stevens M, Njage PMK, Wüthrich D, Egli A, Stephan R, Tasara T.

Genome Announc. 2018 May 24;6(21). pii: e00446-18. doi: 10.1128/genomeA.00446-18.


High Prevalence of Extended-Spectrum β-Lactamase Producing Enterobacteriaceae Among Clinical Isolates From Cats and Dogs Admitted to a Veterinary Hospital in Switzerland.

Zogg AL, Simmen S, Zurfluh K, Stephan R, Schmitt SN, Nüesch-Inderbinen M.

Front Vet Sci. 2018 Mar 27;5:62. doi: 10.3389/fvets.2018.00062. eCollection 2018.


Complete and Assembled Genome Sequences of Pantoea calida DSM 22759T and Pantoea gaviniae DSM 22758T.

Stevens MJA, Zurfluh K, Stephan R.

Genome Announc. 2018 Mar 22;6(12). pii: e00157-18. doi: 10.1128/genomeA.00157-18.


Complete and Assembled Genome Sequence of Salmonella enterica subsp. enterica Serotype Senftenberg N17-509, a Strain Lacking Salmonella Pathogen Island 1.

Stevens MJA, Zurfluh K, Althaus D, Corti S, Lehner A, Stephan R.

Genome Announc. 2018 Mar 22;6(12). pii: e00156-18. doi: 10.1128/genomeA.00156-18.


Analysis of a poultry slaughter process: Influence of process stages on the microbiological contamination of broiler carcasses.

Althaus D, Zweifel C, Stephan R.

Ital J Food Saf. 2017 Nov 6;6(4):7097. doi: 10.4081/ijfs.2017.7097. eCollection 2017 Oct 20.


Consumer Exposure to Antimicrobial Resistant Bacteria From Food at Swiss Retail Level.

Jans C, Sarno E, Collineau L, Meile L, Stärk KDC, Stephan R.

Front Microbiol. 2018 Mar 6;9:362. doi: 10.3389/fmicb.2018.00362. eCollection 2018.


Genomic characterization of malonate positive Cronobacter sakazakii serotype O:2, sequence type 64 strains, isolated from clinical, food, and environment samples.

Gopinath GR, Chase HR, Gangiredla J, Eshwar A, Jang H, Patel I, Negrete F, Finkelstein S, Park E, Chung T, Yoo Y, Woo J, Lee Y, Park J, Choi H, Jeong S, Jun S, Kim M, Lee C, Jeong H, Fanning S, Stephan R, Iversen C, Reich F, Klein G, Lehner A, Tall BD.

Gut Pathog. 2018 Mar 10;10:11. doi: 10.1186/s13099-018-0238-9. eCollection 2018.


Complete and assembled genome sequence of an NDM-9- and CTX-M-15-producing Klebsiella pneumoniae ST147 wastewater isolate from Switzerland.

Nüesch-Inderbinen M, Zurfluh K, Stevens MJA, Stephan R.

J Glob Antimicrob Resist. 2018 Jun;13:53-54. doi: 10.1016/j.jgar.2018.03.001. Epub 2018 Mar 15.


Antimicrobial resistance, multilocus sequence types and virulence profiles of ESBL producing and non-ESBL producing uropathogenic Escherichia coli isolated from cats and dogs in Switzerland.

Zogg AL, Zurfluh K, Schmitt S, Nüesch-Inderbinen M, Stephan R.

Vet Microbiol. 2018 Mar;216:79-84. doi: 10.1016/j.vetmic.2018.02.011. Epub 2018 Feb 10.


Complete Genome Sequence of a Swiss Hepatitis E Virus Isolate from the Liver of a Fattening Pig.

Wist V, Kubacki J, Lechmann J, Steck M, Fraefel C, Stephan R, Bachofen C.

Genome Announc. 2018 Mar 1;6(9). pii: e00113-18. doi: 10.1128/genomeA.00113-18.


Detection of Hepatitis E Virus RNA in Raw Cured Sausages and Raw Cured Sausages Containing Pig Liver at Retail Stores in Switzerland.

Giannini P, Jermini M, Leggeri L, Nüesch-Inderbinen M, Stephan R.

J Food Prot. 2018 Jan;81(1):43-45. doi: 10.4315/0362-028X.JFP-17-270.


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