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Airborne microbial biodiversity and seasonality in Northern and Southern Sweden.

Karlsson E, Johansson AM, Ahlinder J, Lundkvist MJ, Singh NJ, Brodin T, Forsman M, Stenberg P.

PeerJ. 2020 Jan 27;8:e8424. doi: 10.7717/peerj.8424. eCollection 2020.


Biological amplification of low frequency mutations unravels laboratory culture history of the bio-threat agent Francisella tularensis.

Dwibedi C, Larsson P, Ahlinder J, Lindgren P, Myrtennäs K, Granberg M, Larsson E, Öhrman C, Sjödin A, Stenberg P, Forsman M, Johansson A.

Forensic Sci Int Genet. 2020 Mar;45:102230. doi: 10.1016/j.fsigen.2019.102230. Epub 2019 Dec 19.


Exploring a Drosophila Transcription Factor Interaction Network to Identify Cis-Regulatory Modules.

Mahmud AKMF, Yang D, Stenberg P, Ioshikhes I, Nandi S.

J Comput Biol. 2019 Dec 20. doi: 10.1089/cmb.2018.0160. [Epub ahead of print]


Biological characterization of new inhibitors of microsomal PGE synthase-1 in preclinical models of inflammation and vascular tone.

Larsson K, Steinmetz J, Bergqvist F, Arefin S, Spahiu L, Wannberg J, Pawelzik SC, Morgenstern R, Stenberg P, Kublickiene K, Korotkova M, Jakobsson PJ.

Br J Pharmacol. 2019 Dec;176(24):4625-4638. doi: 10.1111/bph.14827. Epub 2019 Dec 28.


A likelihood ratio-based approach for improved source attribution in microbiological forensic investigations.

Lindgren P, Myrtennäs K, Forsman M, Johansson A, Stenberg P, Nordgaard A, Ahlinder J.

Forensic Sci Int. 2019 Sep;302:109869. doi: 10.1016/j.forsciint.2019.06.027. Epub 2019 Jul 2.


Mapping the spectrum of 3D communities in human chromosome conformation capture data.

Lee SH, Kim Y, Lee S, Durang X, Stenberg P, Jeon JH, Lizana L.

Sci Rep. 2019 May 2;9(1):6859. doi: 10.1038/s41598-019-42212-y.


Highly interacting regions of the human genome are enriched with enhancers and bound by DNA repair proteins.

Sobhy H, Kumar R, Lewerentz J, Lizana L, Stenberg P.

Sci Rep. 2019 Mar 14;9(1):4577. doi: 10.1038/s41598-019-40770-9.


Ligand hyperfine interactions at silicon vacancies in 4H-SiC.

Son NT, Stenberg P, Jokubavicius V, Ohshima T, Ul Hassan J, Ivanov IG.

J Phys Condens Matter. 2019 May 15;31(19):195501. doi: 10.1088/1361-648X/ab072b. Epub 2019 Feb 14.


The gut microbiome participates in transgenerational inheritance of low-temperature responses in Drosophila melanogaster.

Zare A, Johansson AM, Karlsson E, Delhomme N, Stenberg P.

FEBS Lett. 2018 Dec;592(24):4078-4086. doi: 10.1002/1873-3468.13278. Epub 2018 Nov 15.


Genomic 3D compartments emerge from unfolding mitotic chromosomes.

Kumar R, Lizana L, Stenberg P.

Chromosoma. 2019 Mar;128(1):15-20. doi: 10.1007/s00412-018-0684-7. Epub 2018 Oct 24.


Accounting for Bacterial Overlap Between Raw Water Communities and Contaminating Sources Improves the Accuracy of Signature-Based Microbial Source Tracking.

Hägglund M, Bäckman S, Macellaro A, Lindgren P, Borgmästars E, Jacobsson K, Dryselius R, Stenberg P, Sjödin A, Forsman M, Ahlinder J.

Front Microbiol. 2018 Oct 2;9:2364. doi: 10.3389/fmicb.2018.02364. eCollection 2018.


PTE, a novel module to target Polycomb Repressive Complex 1 to the human cyclin D2 (CCND2) oncogene.

Cameron SR, Nandi S, Kahn TG, Barrasa JI, Stenberg P, Schwartz YB.

J Biol Chem. 2018 Sep 14;293(37):14342-14358. doi: 10.1074/jbc.RA118.005010. Epub 2018 Aug 1.


CBP Regulates Recruitment and Release of Promoter-Proximal RNA Polymerase II.

Boija A, Mahat DB, Zare A, Holmqvist PH, Philip P, Meyers DJ, Cole PA, Lis JT, Stenberg P, Mannervik M.

Mol Cell. 2017 Nov 2;68(3):491-503.e5. doi: 10.1016/j.molcel.2017.09.031. Epub 2017 Oct 19.


Genome contact map explorer: a platform for the comparison, interactive visualization and analysis of genome contact maps.

Kumar R, Sobhy H, Stenberg P, Lizana L.

Nucleic Acids Res. 2017 Sep 29;45(17):e152. doi: 10.1093/nar/gkx644.


Cardiovascular and thermal strain during 3-4 days of a metabolically demanding cold-weather military operation.

Castellani JW, Spitz MG, Karis AJ, Martini S, Young AJ, Margolis LM, Phillip Karl J, Murphy NE, Xu X, Montain SJ, Bohn JA, Teien HK, Stenberg PH, Gundersen Y, Pasiakos SM.

Extrem Physiol Med. 2017 Sep 6;6:2. doi: 10.1186/s13728-017-0056-6. eCollection 2017.


Estimation of leaf area index and its sunlit portion from DSCOVR EPIC data: Theoretical basis.

Yang B, Knyazikhin Y, Mõttus M, Rautiainen M, Stenberg P, Yan L, Chen C, Yan K, Choi S, Park T, Myneni RB.

Remote Sens Environ. 2017 Sep 1;198:69-84. doi: 10.1016/j.rse.2017.05.033. Epub 2017 Jun 3.


Atrophin controls developmental signaling pathways via interactions with Trithorax-like.

Yeung K, Boija A, Karlsson E, Holmqvist PH, Tsatskis Y, Nisoli I, Yap D, Lorzadeh A, Moksa M, Hirst M, Aparicio S, Fanto M, Stenberg P, Mannervik M, McNeill H.

Elife. 2017 Mar 22;6. pii: e23084. doi: 10.7554/eLife.23084.


Erratum to: CBP binding outside of promoters and enhancers in Drosophila melanogaster.

Philip P, Boija A, Vaid R, Churcher AM, Meyers DJ, Cole PA, Mannervik M, Stenberg P.

Epigenetics Chromatin. 2016 Sep 12;9(1):38. doi: 10.1186/s13072-016-0088-y. eCollection 2016.


Interdependence of PRC1 and PRC2 for recruitment to Polycomb Response Elements.

Kahn TG, Dorafshan E, Schultheis D, Zare A, Stenberg P, Reim I, Pirrotta V, Schwartz YB.

Nucleic Acids Res. 2016 Dec 1;44(21):10132-10149. Epub 2016 Aug 23.


Hybrid layered polymer slot waveguide Young interferometer.

Ahmadi L, Hiltunen M, Stenberg P, Hiltunen J, Aikio S, Roussey M, Saarinen J, Honkanen S.

Opt Express. 2016 May 16;24(10):10275-85. doi: 10.1364/OE.24.010275.


Effects of exercise mode, energy, and macronutrient interventions on inflammation during military training.

Pasiakos SM, Margolis LM, Murphy NE, McClung HL, Martini S, Gundersen Y, Castellani JW, Karl JP, Teien HK, Madslien EH, Stenberg PH, Young AJ, Montain SJ, McClung JP.

Physiol Rep. 2016 Jun;4(11). pii: e12820. doi: 10.14814/phy2.12820.


Pyrolytic carbon coated black silicon.

Shah A, Stenberg P, Karvonen L, Ali R, Honkanen S, Lipsanen H, Peyghambarian N, Kuittinen M, Svirko Y, Kaplas T.

Sci Rep. 2016 May 13;6:25922. doi: 10.1038/srep25922.


CBP binding outside of promoters and enhancers in Drosophila melanogaster.

Philip P, Boija A, Vaid R, Churcher AM, Meyers DJ, Cole PA, Mannervik M, Stenberg P.

Epigenetics Chromatin. 2015 Nov 24;8:48. doi: 10.1186/s13072-015-0042-4. eCollection 2015. Erratum in: Epigenetics Chromatin. 2016;9(1):38.


Scaffolding of a bacterial genome using MinION nanopore sequencing.

Karlsson E, Lärkeryd A, Sjödin A, Forsman M, Stenberg P.

Sci Rep. 2015 Jul 7;5:11996. doi: 10.1038/srep11996.


High Aspect-Ratio Iridium-Coated Nanopillars for Highly Reproducible Surface-Enhanced Raman Scattering (SERS).

Kang G, Matikainen A, Stenberg P, Färm E, Li P, Ritala M, Vahimaa P, Honkanen S, Tan X.

ACS Appl Mater Interfaces. 2015 Jun 3;7(21):11452-9. doi: 10.1021/acsami.5b02206. Epub 2015 May 19.


Complete Genome Sequence of Francisella guangzhouensis Strain 08HL01032T, Isolated from Air-Conditioning Systems in China.

Svensson D, Öhrman C, Bäckman S, Karlsson E, Nilsson E, Byström M, Lärkeryd A, Myrtennäs K, Stenberg P, Qu PH, Trygg J, Scholz HC, Forsman M, Sjödin A.

Genome Announc. 2015 Mar 19;3(2). pii: e00024-15. doi: 10.1128/genomeA.00024-15.


Zinc is the modulator of the calcium-dependent activation of post-translationally acting thiol-enzymes in autoimmune diseases.

Stenberg P, Roth B.

Med Hypotheses. 2015 Apr;84(4):331-5. doi: 10.1016/j.mehy.2015.01.022. Epub 2015 Jan 21.


Non-coding roX RNAs prevent the binding of the MSL-complex to heterochromatic regions.

Figueiredo ML, Kim M, Philip P, Allgardsson A, Stenberg P, Larsson J.

PLoS Genet. 2014 Dec 11;10(12):e1004865. doi: 10.1371/journal.pgen.1004865. eCollection 2014 Dec.


Complete Genome Sequence of Francisella endociliophora Strain FSC1006, Isolated from a Laboratory Culture of the Marine Ciliate Euplotes raikovi.

Sjödin A, Ohrman C, Bäckman S, Lärkeryd A, Granberg M, Lundmark E, Karlsson E, Nilsson E, Vallesi A, Tellgren-Roth C, Stenberg P, Thelaus J.

Genome Announc. 2014 Nov 26;2(6). pii: e01227-14. doi: 10.1128/genomeA.01227-14.


Polarization independent integrated filter based on a cross-slot waveguide.

Roussey M, Stenberg P, Bera A, Paul S, Tervo J, Kuittinen M, Honkanen S.

Opt Express. 2014 Oct 6;22(20):24149-59. doi: 10.1364/OE.22.024149.


Combinatorial interactions are required for the efficient recruitment of pho repressive complex (PhoRC) to polycomb response elements.

Kahn TG, Stenberg P, Pirrotta V, Schwartz YB.

PLoS Genet. 2014 Jul 10;10(7):e1004495. doi: 10.1371/journal.pgen.1004495. eCollection 2014 Jul.


Polymeric slot waveguide interferometer for sensor applications.

Hiltunen M, Hiltunen J, Stenberg P, Aikio S, Kurki L, Vahimaa P, Karioja P.

Opt Express. 2014 Mar 24;22(6):7229-37. doi: 10.1364/OE.22.007229.


Quantitative characterization of clumping in Scots pine crowns.

Stenberg P, Mõttus M, Rautiainen M, Sievänen R.

Ann Bot. 2014 Sep;114(4):689-94.


Male X-linked genes in Drosophila melanogaster are compensated independently of the Male-Specific Lethal complex.

Philip P, Stenberg P.

Epigenetics Chromatin. 2013 Oct 26;6(1):35. doi: 10.1186/1756-8935-6-35.


A merged photonic crystal slot waveguide embedded in ALD-TiO₂.

Stenberg P, Roussey M, Ryczkowski P, Genty G, Honkanen S, Kuittinen M.

Opt Express. 2013 Oct 7;21(20):24154-62. doi: 10.1364/OE.21.024154.


Characterization of a human and murine mPGES-1 inhibitor and comparison to mPGES-1 genetic deletion in mouse models of inflammation.

Leclerc P, Idborg H, Spahiu L, Larsson C, Nekhotiaeva N, Wannberg J, Stenberg P, Korotkova M, Jakobsson PJ.

Prostaglandins Other Lipid Mediat. 2013 Dec;107:26-34. doi: 10.1016/j.prostaglandins.2013.09.001. Epub 2013 Sep 14.


Reply to Ollinger et al.: Remote sensing of leaf nitrogen and emergent ecosystem properties.

Knyazikhin Y, Lewis P, Disney MI, Mõttus M, Rautiainen M, Stenberg P, Kaufmann RK, Marshak A, Schull MA, Carmona PL, Vanderbilt V, Davis AB, Baret F, Jacquemoud S, Lyapustin A, Yang Y, Myneni RB.

Proc Natl Acad Sci U S A. 2013 Jul 2;110(27):E2438. No abstract available.


Meiosis and its deviations in polyploid animals.

Stenberg P, Saura A.

Cytogenet Genome Res. 2013;140(2-4):185-203. doi: 10.1159/000351731. Epub 2013 Jun 18. Review.


Reply to Townsend et al.: Decoupling contributions from canopy structure and leaf optics is critical for remote sensing leaf biochemistry.

Knyazikhin Y, Lewis P, Disney MI, Stenberg P, Mõttus M, Rautiainen M, Kaufmann RK, Marshak A, Schull MA, Latorre Carmona P, Vanderbilt V, Davis AB, Baret F, Jacquemoud S, Lyapustin A, Yang Y, Myneni RB.

Proc Natl Acad Sci U S A. 2013 Mar 19;110(12):E1075. Epub 2013 Mar 5. No abstract available.


Characterization of a new mPGES-1 inhibitor in rat models of inflammation.

Leclerc P, Pawelzik SC, Idborg H, Spahiu L, Larsson C, Stenberg P, Korotkova M, Jakobsson PJ.

Prostaglandins Other Lipid Mediat. 2013 Apr-May;102-103:1-12. doi: 10.1016/j.prostaglandins.2013.03.005. Epub 2013 Mar 23.


HP1a, Su(var)3-9, SETDB1 and POF stimulate or repress gene expression depending on genomic position, gene length and expression pattern in Drosophila melanogaster.

Lundberg LE, Stenberg P, Larsson J.

Nucleic Acids Res. 2013 Apr;41(8):4481-94. doi: 10.1093/nar/gkt158. Epub 2013 Mar 9.


Hyperspectral remote sensing of foliar nitrogen content.

Knyazikhin Y, Schull MA, Stenberg P, Mõttus M, Rautiainen M, Yang Y, Marshak A, Latorre Carmona P, Kaufmann RK, Lewis P, Disney MI, Vanderbilt V, Davis AB, Baret F, Jacquemoud S, Lyapustin A, Myneni RB.

Proc Natl Acad Sci U S A. 2013 Jan 15;110(3):E185-92. doi: 10.1073/pnas.1210196109. Epub 2012 Dec 4.


Concurrent polarization retrieval in multi-heterodyne scanning near-field optical microscopy: validation on silicon form-birefringent grating.

Yu L, Sfez T, Paeder V, Stenberg P, Nakagawa W, Kuittinen M, Herzig HP.

Opt Express. 2012 Oct 8;20(21):23088-99. doi: 10.1364/OE.20.023088.


HP1a recruitment to promoters is independent of H3K9 methylation in Drosophila melanogaster.

Figueiredo ML, Philip P, Stenberg P, Larsson J.

PLoS Genet. 2012;8(11):e1003061. doi: 10.1371/journal.pgen.1003061. Epub 2012 Nov 15.


Polymeric slot waveguide at visible wavelength.

Hiltunen M, Hiltunen J, Stenberg P, Petäjä J, Heinonen E, Vahimaa P, Karioja P.

Opt Lett. 2012 Nov 1;37(21):4449-51. doi: 10.1364/OL.37.004449.


Preferential genome targeting of the CBP co-activator by Rel and Smad proteins in early Drosophila melanogaster embryos.

Holmqvist PH, Boija A, Philip P, Crona F, Stenberg P, Mannervik M.

PLoS Genet. 2012;8(6):e1002769. doi: 10.1371/journal.pgen.1002769. Epub 2012 Jun 21.


POF regulates the expression of genes on the fourth chromosome in Drosophila melanogaster by binding to nascent RNA.

Johansson AM, Stenberg P, Allgardsson A, Larsson J.

Mol Cell Biol. 2012 Jun;32(11):2121-34. doi: 10.1128/MCB.06622-11. Epub 2012 Apr 2.


Buffering and proteolysis are induced by segmental monosomy in Drosophila melanogaster.

Lundberg LE, Figueiredo ML, Stenberg P, Larsson J.

Nucleic Acids Res. 2012 Jul;40(13):5926-37. doi: 10.1093/nar/gks245. Epub 2012 Mar 19.


Sequence signatures involved in targeting the Male-Specific Lethal complex to X-chromosomal genes in Drosophila melanogaster.

Philip P, Pettersson F, Stenberg P.

BMC Genomics. 2012 Mar 19;13:97. doi: 10.1186/1471-2164-13-97.


Normalization of high dimensional genomics data where the distribution of the altered variables is skewed.

Landfors M, Philip P, Rydén P, Stenberg P.

PLoS One. 2011;6(11):e27942. doi: 10.1371/journal.pone.0027942. Epub 2011 Nov 22.

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