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Items: 14

1.

Physical and functional interaction between SET1/COMPASS complex component CFP-1 and a Sin3S HDAC complex in C. elegans.

Beurton F, Stempor P, Caron M, Appert A, Dong Y, Chen RA, Cluet D, Couté Y, Herbette M, Huang N, Polveche H, Spichty M, Bedet C, Ahringer J, Palladino F.

Nucleic Acids Res. 2019 Dec 2;47(21):11164-11180. doi: 10.1093/nar/gkz880.

2.

The USTC co-opts an ancient machinery to drive piRNA transcription in C. elegans.

Weng C, Kosalka J, Berkyurek AC, Stempor P, Feng X, Mao H, Zeng C, Li WJ, Yan YH, Dong MQ, Morero NR, Zuliani C, Barabas O, Ahringer J, Guang S, Miska EA.

Genes Dev. 2019 Jan 1;33(1-2):90-102. doi: 10.1101/gad.319293.118. Epub 2018 Dec 19.

3.

Chromatin accessibility dynamics across C. elegans development and ageing.

Jänes J, Dong Y, Schoof M, Serizay J, Appert A, Cerrato C, Woodbury C, Chen R, Gemma C, Huang N, Kissiov D, Stempor P, Steward A, Zeiser E, Sauer S, Ahringer J.

Elife. 2018 Oct 26;7. pii: e37344. doi: 10.7554/eLife.37344.

4.

Correction: A team of heterochromatin factors collaborates with small RNA pathways to combat repetitive elements and germline stress.

McMurchy AN, Stempor P, Gaarenstroom T, Wysolmerski B, Dong Y, Aussianikava D, Appert A, Huang N, Kolasinska-Zwierz P, Sapetschnig A, Miska EA, Ahringer J.

Elife. 2017 Oct 5;6. pii: e32516. doi: 10.7554/eLife.32516. No abstract available.

5.

An Alternative STAT Signaling Pathway Acts in Viral Immunity in Caenorhabditis elegans.

Tanguy M, Véron L, Stempor P, Ahringer J, Sarkies P, Miska EA.

MBio. 2017 Sep 5;8(5). pii: e00924-17. doi: 10.1128/mBio.00924-17.

6.

A team of heterochromatin factors collaborates with small RNA pathways to combat repetitive elements and germline stress.

McMurchy AN, Stempor P, Gaarenstroom T, Wysolmerski B, Dong Y, Aussianikava D, Appert A, Huang N, Kolasinska-Zwierz P, Sapetschnig A, Miska EA, Ahringer J.

Elife. 2017 Mar 15;6. pii: e21666. doi: 10.7554/eLife.21666. Erratum in: Elife. 2017 Oct 05;6:.

7.

SeqPlots - Interactive software for exploratory data analyses, pattern discovery and visualization in genomics.

Stempor P, Ahringer J.

Wellcome Open Res. 2016 Nov 15;1:14. doi: 10.12688/wellcomeopenres.10004.1. eCollection 2016.

8.

Stable Caenorhabditis elegans chromatin domains separate broadly expressed and developmentally regulated genes.

Evans KJ, Huang N, Stempor P, Chesney MA, Down TA, Ahringer J.

Proc Natl Acad Sci U S A. 2016 Nov 8;113(45):E7020-E7029. doi: 10.1073/pnas.1608162113. Epub 2016 Oct 25.

9.

The DREAM complex promotes gene body H2A.Z for target repression.

Latorre I, Chesney MA, Garrigues JM, Stempor P, Appert A, Francesconi M, Strome S, Ahringer J.

Genes Dev. 2015 Mar 1;29(5):495-500. doi: 10.1101/gad.255810.114.

10.

Comparative analysis of metazoan chromatin organization.

Ho JW, Jung YL, Liu T, Alver BH, Lee S, Ikegami K, Sohn KA, Minoda A, Tolstorukov MY, Appert A, Parker SC, Gu T, Kundaje A, Riddle NC, Bishop E, Egelhofer TA, Hu SS, Alekseyenko AA, Rechtsteiner A, Asker D, Belsky JA, Bowman SK, Chen QB, Chen RA, Day DS, Dong Y, Dose AC, Duan X, Epstein CB, Ercan S, Feingold EA, Ferrari F, Garrigues JM, Gehlenborg N, Good PJ, Haseley P, He D, Herrmann M, Hoffman MM, Jeffers TE, Kharchenko PV, Kolasinska-Zwierz P, Kotwaliwale CV, Kumar N, Langley SA, Larschan EN, Latorre I, Libbrecht MW, Lin X, Park R, Pazin MJ, Pham HN, Plachetka A, Qin B, Schwartz YB, Shoresh N, Stempor P, Vielle A, Wang C, Whittle CM, Xue H, Kingston RE, Kim JH, Bernstein BE, Dernburg AF, Pirrotta V, Kuroda MI, Noble WS, Tullius TD, Kellis M, MacAlpine DM, Strome S, Elgin SC, Liu XS, Lieb JD, Ahringer J, Karpen GH, Park PJ.

Nature. 2014 Aug 28;512(7515):449-52. doi: 10.1038/nature13415.

11.

Extreme HOT regions are CpG-dense promoters in C. elegans and humans.

Chen RA, Stempor P, Down TA, Zeiser E, Feuer SK, Ahringer J.

Genome Res. 2014 Jul;24(7):1138-46. doi: 10.1101/gr.161992.113. Epub 2014 Mar 20.

12.

The landscape of RNA polymerase II transcription initiation in C. elegans reveals promoter and enhancer architectures.

Chen RA, Down TA, Stempor P, Chen QB, Egelhofer TA, Hillier LW, Jeffers TE, Ahringer J.

Genome Res. 2013 Aug;23(8):1339-47. doi: 10.1101/gr.153668.112. Epub 2013 Apr 2.

13.

MMpred: functional miRNA--mRNA interaction analyses by miRNA expression prediction.

Stempor PA, Cauchi M, Wilson P.

BMC Genomics. 2012 Nov 14;13:620. doi: 10.1186/1471-2164-13-620.

14.

H4K20me1 contributes to downregulation of X-linked genes for C. elegans dosage compensation.

Vielle A, Lang J, Dong Y, Ercan S, Kotwaliwale C, Rechtsteiner A, Appert A, Chen QB, Dose A, Egelhofer T, Kimura H, Stempor P, Dernburg A, Lieb JD, Strome S, Ahringer J.

PLoS Genet. 2012 Sep;8(9):e1002933. doi: 10.1371/journal.pgen.1002933. Epub 2012 Sep 13.

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