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Items: 1 to 50 of 83

1.

Genome Editing, Gene Drives, and Synthetic Biology: Will They Contribute to Disease-Resistant Crops, and Who Will Benefit?

Pixley KV, Falck-Zepeda JB, Giller KE, Glenna LL, Gould F, Mallory-Smith CA, Stelly DM, Stewart CN.

Annu Rev Phytopathol. 2019 May 31. doi: 10.1146/annurev-phyto-080417-045954. [Epub ahead of print]

PMID:
31150590
2.

Insights Into Upland Cotton (Gossypium hirsutum L.) Genetic Recombination Based on 3 High-Density Single-Nucleotide Polymorphism and a Consensus Map Developed Independently With Common Parents.

Ulloa M, Hulse-Kemp AM, De Santiago LM, Stelly DM, Burke JJ.

Genomics Insights. 2017 Dec 21;10:1178631017735104. doi: 10.1177/1178631017735104. eCollection 2017.

3.

Sub genome anchored physical frameworks of the allotetraploid Upland cotton (Gossypium hirsutum L.) genome, and an approach toward reference-grade assemblies of polyploids.

Saski CA, Scheffler BE, Hulse-Kemp AM, Liu B, Song Q, Ando A, Stelly DM, Scheffler JA, Grimwood J, Jones DC, Peterson DG, Schmutz J, Chen ZJ.

Sci Rep. 2017 Nov 10;7(1):15274. doi: 10.1038/s41598-017-14885-w.

4.
5.

Elevating the conversation about GE crops.

Gould F, Amasino RM, Brossard D, Buell CR, Dixon RA, Falck-Zepeda JB, Gallo MA, Giller KE, Glenna LL, Griffin T, Hamaker BR, Kareiva PM, Magraw D, Mallory-Smith C, Pixley KV, Ransom EP, Rodemeyer M, Stelly DM, Stewart CN Jr, Whitaker RJ.

Nat Biotechnol. 2017 Apr 11;35(4):302-304. doi: 10.1038/nbt.3841. No abstract available.

PMID:
28398318
6.

Diversity analysis of cotton (Gossypium hirsutum L.) germplasm using the CottonSNP63K Array.

Hinze LL, Hulse-Kemp AM, Wilson IW, Zhu QH, Llewellyn DJ, Taylor JM, Spriggs A, Fang DD, Ulloa M, Burke JJ, Giband M, Lacape JM, Van Deynze A, Udall JA, Scheffler JA, Hague S, Wendel JF, Pepper AE, Frelichowski J, Lawley CT, Jones DC, Percy RG, Stelly DM.

BMC Plant Biol. 2017 Feb 3;17(1):37. doi: 10.1186/s12870-017-0981-y.

7.

'Jones hybrid' hickory: a case study in Carya curation.

Grauke LJ, Mendoza-Herrera MA, Stelly DM, Klein PE.

Springerplus. 2016 Oct 24;5(1):1860. eCollection 2016.

8.

Correction: DNA Sequence Evolution and Rare Homoeologous Conversion in Tetraploid Cotton.

Page JT, Liechty ZS, Alexander RH, Clemons K, Hulse-Kemp AM, Ashrafi H, Van Deynze A, Stelly DM, Udall JA.

PLoS Genet. 2016 Jul 22;12(7):e1006206. doi: 10.1371/journal.pgen.1006206. eCollection 2016 Jul.

9.

DNA Sequence Evolution and Rare Homoeologous Conversion in Tetraploid Cotton.

Page JT, Liechty ZS, Alexander RH, Clemons K, Hulse-Kemp AM, Ashrafi H, Van Deynze A, Stelly DM, Udall JA.

PLoS Genet. 2016 May 11;12(5):e1006012. doi: 10.1371/journal.pgen.1006012. eCollection 2016 May. Erratum in: PLoS Genet. 2016 Jul;12(7):e1006206.

10.

Estimating Broad Sense Heritability and Investigating the Mechanism of Genetic Transmission of Cold Tolerance Using Mannitol as a Measure of Post-freeze Juice Degradation in Sugarcane and Energycane (Saccharum spp.).

Hale AL, Viator RP, Eggleston G, Hodnett G, Stelly DM, Boykin D, Miller DK.

J Agric Food Chem. 2016 Mar 2;64(8):1657-63. doi: 10.1021/acs.jafc.5b03803. Epub 2016 Feb 17.

PMID:
26885566
11.

Analysis of root-knot nematode and fusarium wilt disease resistance in cotton (Gossypium spp.) using chromosome substitution lines from two alien species.

Ulloa M, Wang C, Saha S, Hutmacher RB, Stelly DM, Jenkins JN, Burke J, Roberts PA.

Genetica. 2016 Apr;144(2):167-79. doi: 10.1007/s10709-016-9887-0. Epub 2016 Feb 17.

PMID:
26882892
12.

Phytohormonal networks promote differentiation of fiber initials on pre-anthesis cotton ovules grown in vitro and in planta.

Kim HJ, Hinchliffe DJ, Triplett BA, Chen ZJ, Stelly DM, Yeater KM, Moon HS, Gilbert MK, Thyssen GN, Turley RB, Fang DD.

PLoS One. 2015 Apr 30;10(4):e0125046. doi: 10.1371/journal.pone.0125046. eCollection 2015.

13.

Development of a 63K SNP Array for Cotton and High-Density Mapping of Intraspecific and Interspecific Populations of Gossypium spp.

Hulse-Kemp AM, Lemm J, Plieske J, Ashrafi H, Buyyarapu R, Fang DD, Frelichowski J, Giband M, Hague S, Hinze LL, Kochan KJ, Riggs PK, Scheffler JA, Udall JA, Ulloa M, Wang SS, Zhu QH, Bag SK, Bhardwaj A, Burke JJ, Byers RL, Claverie M, Gore MA, Harker DB, Islam MS, Jenkins JN, Jones DC, Lacape JM, Llewellyn DJ, Percy RG, Pepper AE, Poland JA, Mohan Rai K, Sawant SV, Singh SK, Spriggs A, Taylor JM, Wang F, Yourstone SM, Zheng X, Lawley CT, Ganal MW, Van Deynze A, Wilson IW, Stelly DM.

G3 (Bethesda). 2015 Apr 22;5(6):1187-209. doi: 10.1534/g3.115.018416.

14.

Sequencing of allotetraploid cotton (Gossypium hirsutum L. acc. TM-1) provides a resource for fiber improvement.

Zhang T, Hu Y, Jiang W, Fang L, Guan X, Chen J, Zhang J, Saski CA, Scheffler BE, Stelly DM, Hulse-Kemp AM, Wan Q, Liu B, Liu C, Wang S, Pan M, Wang Y, Wang D, Ye W, Chang L, Zhang W, Song Q, Kirkbride RC, Chen X, Dennis E, Llewellyn DJ, Peterson DG, Thaxton P, Jones DC, Wang Q, Xu X, Zhang H, Wu H, Zhou L, Mei G, Chen S, Tian Y, Xiang D, Li X, Ding J, Zuo Q, Tao L, Liu Y, Li J, Lin Y, Hui Y, Cao Z, Cai C, Zhu X, Jiang Z, Zhou B, Guo W, Li R, Chen ZJ.

Nat Biotechnol. 2015 May;33(5):531-7. doi: 10.1038/nbt.3207. Epub 2015 Apr 20.

PMID:
25893781
15.

Phylogenetic analysis of Gossypium L. using restriction fragment length polymorphism of repeated sequences.

Zhang M, Rong Y, Lee MK, Zhang Y, Stelly DM, Zhang HB.

Mol Genet Genomics. 2015 Oct;290(5):1859-72. doi: 10.1007/s00438-015-1039-1. Epub 2015 Apr 16.

PMID:
25877517
16.

BAC-End Sequence-Based SNP Mining in Allotetraploid Cotton (Gossypium) Utilizing Resequencing Data, Phylogenetic Inferences, and Perspectives for Genetic Mapping.

Hulse-Kemp AM, Ashrafi H, Stoffel K, Zheng X, Saski CA, Scheffler BE, Fang DD, Chen ZJ, Van Deynze A, Stelly DM.

G3 (Bethesda). 2015 Apr 9;5(6):1095-105. doi: 10.1534/g3.115.017749.

17.

Development and bin mapping of gene-associated interspecific SNPs for cotton (Gossypium hirsutum L.) introgression breeding efforts.

Hulse-Kemp AM, Ashrafi H, Zheng X, Wang F, Hoegenauer KA, Maeda AB, Yang SS, Stoffel K, Matvienko M, Clemons K, Udall JA, Van Deynze A, Jones DC, Stelly DM.

BMC Genomics. 2014 Oct 30;15:945. doi: 10.1186/1471-2164-15-945.

18.
19.

miR828 and miR858 regulate homoeologous MYB2 gene functions in Arabidopsis trichome and cotton fibre development.

Guan X, Pang M, Nah G, Shi X, Ye W, Stelly DM, Chen ZJ.

Nat Commun. 2014;5:3050. doi: 10.1038/ncomms4050.

PMID:
24430011
20.

Non-destructive high-throughput DNA extraction and genotyping methods for cotton seeds and seedlings.

Zheng X, Hoegenauer KA, Maeda AB, Wang F, Stelly DM, Nichols RL, Jones DC.

Biotechniques. 2015 May 1;58(5):234-43. doi: 10.2144/000114286. eCollection 2015 May.

21.

Construction of a plant-transformation-competent BIBAC library and genome sequence analysis of polyploid Upland cotton (Gossypium hirsutum L.).

Lee MK, Zhang Y, Zhang M, Goebel M, Kim HJ, Triplett BA, Stelly DM, Zhang HB.

BMC Genomics. 2013 Mar 28;14:208. doi: 10.1186/1471-2164-14-208.

22.

Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.

Paterson AH, Wendel JF, Gundlach H, Guo H, Jenkins J, Jin D, Llewellyn D, Showmaker KC, Shu S, Udall J, Yoo MJ, Byers R, Chen W, Doron-Faigenboim A, Duke MV, Gong L, Grimwood J, Grover C, Grupp K, Hu G, Lee TH, Li J, Lin L, Liu T, Marler BS, Page JT, Roberts AW, Romanel E, Sanders WS, Szadkowski E, Tan X, Tang H, Xu C, Wang J, Wang Z, Zhang D, Zhang L, Ashrafi H, Bedon F, Bowers JE, Brubaker CL, Chee PW, Das S, Gingle AR, Haigler CH, Harker D, Hoffmann LV, Hovav R, Jones DC, Lemke C, Mansoor S, ur Rahman M, Rainville LN, Rambani A, Reddy UK, Rong JK, Saranga Y, Scheffler BE, Scheffler JA, Stelly DM, Triplett BA, Van Deynze A, Vaslin MF, Waghmare VN, Walford SA, Wright RJ, Zaki EA, Zhang T, Dennis ES, Mayer KF, Peterson DG, Rokhsar DS, Wang X, Schmutz J.

Nature. 2012 Dec 20;492(7429):423-7. doi: 10.1038/nature11798.

PMID:
23257886
23.

Interspecific chromosomal effects on agronomic traits in Gossypium hirsutum by AD analysis using intermated G. barbadense chromosome substitution lines.

Saha S, Wu J, Jenkins JN, McCarty JC, Stelly DM.

Theor Appl Genet. 2013 Jan;126(1):109-17. doi: 10.1007/s00122-012-1965-9. Epub 2012 Sep 4.

PMID:
22945267
24.

A cotton-fiber-associated cyclin-dependent kinase a gene: characterization and chromosomal location.

Gao W, Saha S, Ma DP, Guo Y, Jenkins JN, Stelly DM.

Int J Plant Genomics. 2012;2012:613812. doi: 10.1155/2012/613812. Epub 2012 Jun 14.

25.

Genome physical mapping of polyploids: a BIBAC physical map of cultivated tetraploid cotton, Gossypium hirsutum L.

Zhang M, Zhang Y, Huang JJ, Zhang X, Lee MK, Stelly DM, Zhang HB.

PLoS One. 2012;7(3):e33644. doi: 10.1371/journal.pone.0033644. Epub 2012 Mar 16.

26.

A high-density simple sequence repeat and single nucleotide polymorphism genetic map of the tetraploid cotton genome.

Yu JZ, Kohel RJ, Fang DD, Cho J, Van Deynze A, Ulloa M, Hoffman SM, Pepper AE, Stelly DM, Jenkins JN, Saha S, Kumpatla SP, Shah MR, Hugie WV, Percy RG.

G3 (Bethesda). 2012 Jan;2(1):43-58. doi: 10.1534/g3.111.001552. Epub 2012 Jan 1.

27.

Molecular evolution of the clustered MIC-3 multigene family of Gossypium species.

Buriev ZT, Saha S, Shermatov SE, Jenkins JN, Abdukarimov A, Stelly DM, Abdurakhmonov IY.

Theor Appl Genet. 2011 Dec;123(8):1359-73. doi: 10.1007/s00122-011-1672-y. Epub 2011 Aug 18.

PMID:
21850479
28.

Activation of Arabidopsis seed hair development by cotton fiber-related genes.

Guan X, Lee JJ, Pang M, Shi X, Stelly DM, Chen ZJ.

PLoS One. 2011;6(7):e21301. doi: 10.1371/journal.pone.0021301. Epub 2011 Jul 11.

29.

Delineation of interspecific epistasis on fiber quality traits in Gossypium hirsutum by ADAA analysis of intermated G. barbadense chromosome substitution lines.

Saha S, Wu J, Jenkins JN, McCarty JC, Hayes R, Stelly DM.

Theor Appl Genet. 2011 May;122(7):1351-61. doi: 10.1007/s00122-011-1536-5. Epub 2011 Feb 8.

PMID:
21301803
30.

Early-generation germplasm introgression from Sorghum macrospermum into sorghum (S. bicolor).

Kuhlman LC, Burson BL, Stelly DM, Klein PE, Klein RR, Price HJ, Rooney WL.

Genome. 2010 Jun;53(6):419-29. doi: 10.1139/g10-027.

PMID:
20555431
31.

Structure and size variations between 12A and 12D homoeologous chromosomes based on high-resolution cytogenetic map in allotetraploid cotton.

Wang K, Guo W, Yang Z, Hu Y, Zhang W, Zhou B, Stelly DM, Chen ZJ, Zhang T.

Chromosoma. 2010 Jun;119(3):255-66. doi: 10.1007/s00412-009-0254-0. Epub 2010 Feb 2.

PMID:
20127105
32.

Genetic dissection of chromosome substitution lines of cotton to discover novel Gossypium barbadense L. alleles for improvement of agronomic traits.

Saha S, Wu J, Jenkins JN, McCarty JC, Hayes R, Stelly DM.

Theor Appl Genet. 2010 Apr;120(6):1193-205. doi: 10.1007/s00122-009-1247-3. Epub 2010 Jan 23.

PMID:
20094702
33.

Genome-wide analysis reveals rapid and dynamic changes in miRNA and siRNA sequence and expression during ovule and fiber development in allotetraploid cotton (Gossypium hirsutum L.).

Pang M, Woodward AW, Agarwal V, Guan X, Ha M, Ramachandran V, Chen X, Triplett BA, Stelly DM, Chen ZJ.

Genome Biol. 2009;10(11):R122. doi: 10.1186/gb-2009-10-11-r122. Epub 2009 Nov 4.

34.

Clustering, haplotype diversity and locations of MIC-3: a unique root-specific defense-related gene family in Upland cotton (Gossypium hirsutum L.).

Buriev ZT, Saha S, Abdurakhmonov IY, Jenkins JN, Abdukarimov A, Scheffler BE, Stelly DM.

Theor Appl Genet. 2010 Feb;120(3):587-606. doi: 10.1007/s00122-009-1178-z. Epub 2009 Oct 28.

PMID:
19862497
35.

Sampling nucleotide diversity in cotton.

Van Deynze A, Stoffel K, Lee M, Wilkins TA, Kozik A, Cantrell RG, Yu JZ, Kohel RJ, Stelly DM.

BMC Plant Biol. 2009 Oct 20;9:125. doi: 10.1186/1471-2229-9-125.

36.

Genetic recombination in Sorghum bicolor x S. macrospermum interspecific hybrids.

Kuhlman LC, Burson BL, Klein PE, Klein RR, Stelly DM, Price HJ, Rooney WL.

Genome. 2008 Sep;51(9):749-56. doi: 10.1139/G08-061.

PMID:
18772953
37.

Cotton (Gossypium spp.) R2R3-MYB transcription factors SNP identification, phylogenomic characterization, chromosome localization, and linkage mapping.

An C, Saha S, Jenkins JN, Ma DP, Scheffler BE, Kohel RJ, Yu JZ, Stelly DM.

Theor Appl Genet. 2008 May;116(7):1015-26. doi: 10.1007/s00122-008-0732-4. Epub 2008 Mar 13.

PMID:
18338155
38.

Toward sequencing cotton (Gossypium) genomes.

Chen ZJ, Scheffler BE, Dennis E, Triplett BA, Zhang T, Guo W, Chen X, Stelly DM, Rabinowicz PD, Town CD, Arioli T, Brubaker C, Cantrell RG, Lacape JM, Ulloa M, Chee P, Gingle AR, Haigler CH, Percy R, Saha S, Wilkins T, Wright RJ, Van Deynze A, Zhu Y, Yu S, Abdurakhmonov I, Katageri I, Kumar PA, Mehboob-Ur-Rahman, Zafar Y, Yu JZ, Kohel RJ, Wendel JF, Paterson AH.

Plant Physiol. 2007 Dec;145(4):1303-10. No abstract available.

39.

Transcriptome profiling, sequence characterization, and SNP-based chromosomal assignment of the EXPANSIN genes in cotton.

An C, Saha S, Jenkins JN, Scheffler BE, Wilkins TA, Stelly DM.

Mol Genet Genomics. 2007 Nov;278(5):539-53. Epub 2007 Aug 28.

PMID:
17724613
40.

Integrative mapping of Gossypium hirsutum L. by meiotic fluorescent in situ hybridization of a tandemly repetitive sequence (B77).

Ji Y, Zhao X, Paterson AH, Price HJ, Stelly DM.

Genetics. 2007 May;176(1):115-23. Epub 2007 Apr 3.

41.

Accumulation of genome-specific transcripts, transcription factors and phytohormonal regulators during early stages of fiber cell development in allotetraploid cotton.

Samuel Yang S, Cheung F, Lee JJ, Ha M, Wei NE, Sze SH, Stelly DM, Thaxton P, Triplett B, Town CD, Jeffrey Chen Z.

Plant J. 2006 Sep;47(5):761-75. Epub 2006 Aug 2.

42.

Cotton genome mapping with new microsatellites from Acala 'Maxxa' BAC-ends.

Frelichowski JE Jr, Palmer MB, Main D, Tomkins JP, Cantrell RG, Stelly DM, Yu J, Kohel RJ, Ulloa M.

Mol Genet Genomics. 2006 May;275(5):479-91. Epub 2006 Feb 25.

PMID:
16501995
43.

Effects of chromosome-specific introgression in upland cotton on fiber and agronomic traits.

Saha S, Jenkins JN, Wu J, McCarty JC, GutiƩrrez OA, Percy RG, Cantrell RG, Stelly DM.

Genetics. 2006 Mar;172(3):1927-38. Epub 2005 Dec 30.

44.

Wide-cross whole-genome radiation hybrid mapping of the cotton (Gossypium barbadense L.) genome.

Gao W, Chen ZJ, Yu JZ, Kohel RJ, Womack JE, Stelly DM.

Mol Genet Genomics. 2006 Feb;275(2):105-13. Epub 2005 Dec 16.

PMID:
16362372
45.

An additive-dominance model to determine chromosomal effects in chromosome substitution lines and other gemplasms.

Wu J, Jenkins JN, McCarty JC, Saha S, Stelly DM.

Theor Appl Genet. 2006 Feb;112(3):391-9. Epub 2005 Dec 9.

PMID:
16341682
46.

Developmental and gene expression analyses of a cotton naked seed mutant.

Lee JJ, Hassan OS, Gao W, Wei NE, Kohel RJ, Chen XY, Payton P, Sze SH, Stelly DM, Chen ZJ.

Planta. 2006 Feb;223(3):418-32. Epub 2005 Oct 28.

PMID:
16254724
47.

Genetic mapping of new cotton fiber loci using EST-derived microsatellites in an interspecific recombinant inbred line cotton population.

Park YH, Alabady MS, Ulloa M, Sickler B, Wilkins TA, Yu J, Stelly DM, Kohel RJ, el-Shihy OM, Cantrell RG.

Mol Genet Genomics. 2005 Nov;274(4):428-41. Epub 2005 Sep 27.

PMID:
16187061
48.

Comprehensive molecular cytogenetic analysis of sorghum genome architecture: distribution of euchromatin, heterochromatin, genes and recombination in comparison to rice.

Kim JS, Islam-Faridi MN, Klein PE, Stelly DM, Price HJ, Klein RR, Mullet JE.

Genetics. 2005 Dec;171(4):1963-76. Epub 2005 Sep 2.

49.

Chromosomal assignment of RFLP linkage groups harboring important QTLs on an intraspecific cotton (Gossypium hirsutum L.) Joinmap.

Ulloa M, Saha S, Jenkins JN, Meredith WR Jr, McCarty JC Jr, Stelly DM.

J Hered. 2005 Mar-Apr;96(2):132-44. Epub 2004 Dec 23.

PMID:
15618303
50.

Molecular cytogenetic maps of sorghum linkage groups 2 and 8.

Kim JS, Klein PE, Klein RR, Price HJ, Mullet JE, Stelly DM.

Genetics. 2005 Feb;169(2):955-65. Epub 2004 Oct 16.

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