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Items: 11

1.

HH-suite3 for fast remote homology detection and deep protein annotation.

Steinegger M, Meier M, Mirdita M, Vöhringer H, Haunsberger SJ, Söding J.

BMC Bioinformatics. 2019 Sep 14;20(1):473. doi: 10.1186/s12859-019-3019-7.

2.

Protein-level assembly increases protein sequence recovery from metagenomic samples manyfold.

Steinegger M, Mirdita M, Söding J.

Nat Methods. 2019 Jul;16(7):603-606. doi: 10.1038/s41592-019-0437-4. Epub 2019 Jun 24.

PMID:
31235882
3.

MMseqs2 desktop and local web server app for fast, interactive sequence searches.

Mirdita M, Steinegger M, Söding J.

Bioinformatics. 2019 Aug 15;35(16):2856-2858. doi: 10.1093/bioinformatics/bty1057.

4.

Clustering huge protein sequence sets in linear time.

Steinegger M, Söding J.

Nat Commun. 2018 Jun 29;9(1):2542. doi: 10.1038/s41467-018-04964-5.

5.

HFSP: high speed homology-driven function annotation of proteins.

Mahlich Y, Steinegger M, Rost B, Bromberg Y.

Bioinformatics. 2018 Jul 1;34(13):i304-i312. doi: 10.1093/bioinformatics/bty262.

6.

Simple decision rules underlie collaborative hunting in yellow saddle goatfish.

Steinegger M, Roche DG, Bshary R.

Proc Biol Sci. 2018 Jan 31;285(1871). pii: 20172488. doi: 10.1098/rspb.2017.2488.

7.

MMseqs2 enables sensitive protein sequence searching for the analysis of massive data sets.

Steinegger M, Söding J.

Nat Biotechnol. 2017 Nov;35(11):1026-1028. doi: 10.1038/nbt.3988. Epub 2017 Oct 16. No abstract available.

PMID:
29035372
8.

Uniclust databases of clustered and deeply annotated protein sequences and alignments.

Mirdita M, von den Driesch L, Galiez C, Martin MJ, Söding J, Steinegger M.

Nucleic Acids Res. 2017 Jan 4;45(D1):D170-D176. doi: 10.1093/nar/gkw1081. Epub 2016 Nov 28.

9.

Satellite-based forest monitoring: spatial and temporal forecast of growing index and short-wave infrared band.

Bayr C, Gallaun H, Kleb U, Kornberger B, Steinegger M, Winter M.

Geospat Health. 2016 Apr 18;11(1):310. doi: 10.4081/gh.2016.310.

10.

MMseqs software suite for fast and deep clustering and searching of large protein sequence sets.

Hauser M, Steinegger M, Söding J.

Bioinformatics. 2016 May 1;32(9):1323-30. doi: 10.1093/bioinformatics/btw006. Epub 2016 Jan 6.

PMID:
26743509
11.

Cloud prediction of protein structure and function with PredictProtein for Debian.

Kaján L, Yachdav G, Vicedo E, Steinegger M, Mirdita M, Angermüller C, Böhm A, Domke S, Ertl J, Mertes C, Reisinger E, Staniewski C, Rost B.

Biomed Res Int. 2013;2013:398968. doi: 10.1155/2013/398968. Epub 2013 Jul 18.

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