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Items: 1 to 50 of 73

1.

Genetic control of longissimus dorsi muscle gene expression variation and joint analysis with phenotypic quantitative trait loci in pigs.

Velez-Irizarry D, Casiro S, Daza KR, Bates RO, Raney NE, Steibel JP, Ernst CW.

BMC Genomics. 2019 Jan 3;20(1):3. doi: 10.1186/s12864-018-5386-2.

2.

Induction of maxillary and mandibular squamous epithelial cell proliferation in mink (Neovison vison) by β-naphthoflavone.

Matz DK, Chuck J, Hosmer RJ, Piper HC, Link JE, Fitzgerald SD, Steibel JP, Bursian SJ.

Environ Toxicol Chem. 2019 Feb;38(2):460-463. doi: 10.1002/etc.4329. Epub 2019 Jan 8.

PMID:
30525228
3.

Whole-Genome Multi-omic Study of Survival in Patients with Glioblastoma Multiforme.

Bernal Rubio YL, González-Reymúndez A, Wu KH, Griguer CE, Steibel JP, de Los Campos G, Doseff A, Gallo K, Vazquez AI.

G3 (Bethesda). 2018 Nov 6;8(11):3627-3636. doi: 10.1534/g3.118.200391.

4.

Genome-wide association analyses of lesion counts in group-housed pigs.

Wurtz KE, Siegford JM, Ernst CW, Raney NE, Bates RO, Steibel JP.

Anim Genet. 2018 Dec;49(6):628-631. doi: 10.1111/age.12713. Epub 2018 Aug 22.

PMID:
30132933
5.

Genomic heritability and genome-wide association analysis of anti-Müllerian hormone in Holstein dairy heifers.

Nawaz MY, Jimenez-Krassel F, Steibel JP, Lu Y, Baktula A, Vukasinovic N, Neuder L, Ireland JLH, Ireland JJ, Tempelman RJ.

J Dairy Sci. 2018 Sep;101(9):8063-8075. doi: 10.3168/jds.2018-14798. Epub 2018 Jul 13.

PMID:
30007805
6.

Estimation of genetic parameters for lesion scores and growth traits in group-housed pigs.

Wurtz KE, Siegford JM, Bates RO, Ernst CW, Steibel JP.

J Anim Sci. 2017 Oct;95(10):4310-4317. doi: 10.2527/jas2017.1757.

PMID:
29108070
7.

Sex-Specific Modulation of Fetal Adipogenesis by Gestational Bisphenol A and Bisphenol S Exposure.

Pu Y, Gingrich JD, Steibel JP, Veiga-Lopez A.

Endocrinology. 2017 Nov 1;158(11):3844-3858. doi: 10.1210/en.2017-00615.

8.

Profiling and characterization of a longissimus dorsi muscle microRNA dataset from an F2 Duroc × Pietrain pig resource population.

Daza KR, Steibel JP, Velez-Irizarry D, Raney NE, Bates RO, Ernst CW.

Genom Data. 2017 Jul 5;13:50-53. doi: 10.1016/j.gdata.2017.07.006. eCollection 2017 Sep.

9.

Genome-Wide Association Analyses Based on Broadly Different Specifications for Prior Distributions, Genomic Windows, and Estimation Methods.

Chen C, Steibel JP, Tempelman RJ.

Genetics. 2017 Aug;206(4):1791-1806. doi: 10.1534/genetics.117.202259. Epub 2017 Jun 21.

10.

Evidence for transcriptome-wide RNA editing among Sus scrofa PRE-1 SINE elements.

Funkhouser SA, Steibel JP, Bates RO, Raney NE, Schenk D, Ernst CW.

BMC Genomics. 2017 May 9;18(1):360. doi: 10.1186/s12864-017-3766-7.

11.

Genome-wide association study in an F2 Duroc x Pietrain resource population for economically important meat quality and carcass traits.

Casiró S, Velez-Irizarry D, Ernst CW, Raney NE, Bates RO, Charles MG, Steibel JP.

J Anim Sci. 2017 Feb;95(2):545-558. doi: 10.2527/jas.2016.1003.

PMID:
28380601
12.

Interference of age and supplementation of direct-fed microbial and essential oil in the activity of digestive enzymes and expression of genes related to transport and digestion of carbohydrates and proteins in the small intestine of broilers.

Fernandez-Alarcon MF, Trottier N, Steibel JP, Lunedo R, Campos DMB, Santana AM, Pizauro JM Jr, Furlan RL, Furlan LR.

Poult Sci. 2017 Aug 1;96(8):2920-2930. doi: 10.3382/ps/pex039.

PMID:
28339792
14.

Estimates of the actual relationship between half-sibs in a pig population.

García-Baccino CA, Munilla S, Legarra A, Vitezica ZG, Forneris NS, Bates RO, Ernst CW, Raney NE, Steibel JP, Cantet RJ.

J Anim Breed Genet. 2017 Apr;134(2):109-118. doi: 10.1111/jbg.12236. Epub 2016 Sep 26.

PMID:
27670252
15.

Comparisons of bone properties and keel deformities between strains and housing systems in end-of-lay hens.

Regmi P, Nelson N, Steibel JP, Anderson KE, Karcher DM.

Poult Sci. 2016 Oct 1;95(10):2225-34. doi: 10.3382/ps/pew199. Epub 2016 Jul 18.

PMID:
27433008
16.

Refining genomewide association for growth and fat deposition traits in an F pig population.

Duarte JL, Cantet RJ, Rubio YL, Bates RO, Ernst CW, Raney NE, Rogberg-Muñoz A, Steibel JP.

J Anim Sci. 2016 Apr;94(4):1387-97. doi: 10.2527/jas.2015-0182.

PMID:
27135998
17.

A comparison of methods to estimate genomic relationships using pedigree and markers in livestock populations.

Forneris NS, Steibel JP, Legarra A, Vitezica ZG, Bates RO, Ernst CW, Basso AL, Cantet RJ.

J Anim Breed Genet. 2016 Dec;133(6):452-462. doi: 10.1111/jbg.12217. Epub 2016 May 2.

PMID:
27135179
18.

Differential Effects of Sex Pheromone Compounds on Adult Female Sea Lamprey (Petromyzon marinus) Locomotor Patterns.

Walaszczyk EJ, Goheen BB, Steibel JP, Li W.

J Biol Rhythms. 2016 Jun;31(3):289-98. doi: 10.1177/0748730416629248. Epub 2016 Feb 17.

PMID:
26888974
19.

Linkage disequilibrium, persistence of phase and effective population size estimates in Hereford and Braford cattle.

Biegelmeyer P, Gulias-Gomes CC, Caetano AR, Steibel JP, Cardoso FF.

BMC Genet. 2016 Feb 1;17:32. doi: 10.1186/s12863-016-0339-8.

20.

Implementing meta-analysis from genome-wide association studies for pork quality traits.

Bernal Rubio YL, Gualdrón Duarte JL, Bates RO, Ernst CW, Nonneman D, Rohrer GA, King DA, Shackelford SD, Wheeler TL, Cantet RJ, Steibel JP.

J Anim Sci. 2015 Dec;93(12):5607-17. doi: 10.2527/jas.2015-9502.

PMID:
26641170
21.

Meta-analysis of genome-wide association from genomic prediction models.

Bernal Rubio YL, Gualdrón Duarte JL, Bates RO, Ernst CW, Nonneman D, Rohrer GA, King A, Shackelford SD, Wheeler TL, Cantet RJ, Steibel JP.

Anim Genet. 2016 Feb;47(1):36-48. doi: 10.1111/age.12378. Epub 2015 Nov 26.

22.

Genomic Prediction Accounting for Residual Heteroskedasticity.

Ou Z, Tempelman RJ, Steibel JP, Ernst CW, Bates RO, Bello NM.

G3 (Bethesda). 2015 Nov 12;6(1):1-13. doi: 10.1534/g3.115.022897.

23.

Searching for causal networks involving latent variables in complex traits: Application to growth, carcass, and meat quality traits in pigs.

Peñagaricano F, Valente BD, Steibel JP, Bates RO, Ernst CW, Khatib H, Rosa GJ.

J Anim Sci. 2015 Oct;93(10):4617-23. doi: 10.2527/jas.2015-9213.

PMID:
26523553
24.

Exploring causal networks underlying fat deposition and muscularity in pigs through the integration of phenotypic, genotypic and transcriptomic data.

Peñagaricano F, Valente BD, Steibel JP, Bates RO, Ernst CW, Khatib H, Rosa GJ.

BMC Syst Biol. 2015 Sep 16;9:58. doi: 10.1186/s12918-015-0207-6.

25.

Assessing Dissimilarity Measures for Sample-Based Hierarchical Clustering of RNA Sequencing Data Using Plasmode Datasets.

Reeb PD, Bramardi SJ, Steibel JP.

PLoS One. 2015 Jul 10;10(7):e0132310. doi: 10.1371/journal.pone.0132310. eCollection 2015.

26.

Whole blood microarray analysis of pigs showing extreme phenotypes after a porcine reproductive and respiratory syndrome virus infection.

Schroyen M, Steibel JP, Koltes JE, Choi I, Raney NE, Eisley C, Fritz-Waters E, Reecy JM, Dekkers JC, Rowland RR, Lunney JK, Ernst CW, Tuggle CK.

BMC Genomics. 2015 Jul 10;16:516. doi: 10.1186/s12864-015-1741-8.

27.

A comparison of alternative random regression and reaction norm models for whole genome predictions.

Yang W, Chen C, Steibel JP, Ernst CW, Bates RO, Zhou L, Tempelman RJ.

J Anim Sci. 2015 Jun;93(6):2678-92. doi: 10.2527/jas.2014-8685.

PMID:
26115256
28.
29.

Effect of rearing environment on bone growth of pullets.

Regmi P, Deland TS, Steibel JP, Robison CI, Haut RC, Orth MW, Karcher DM.

Poult Sci. 2015 Mar;94(3):502-11. doi: 10.3382/ps/peu041. Epub 2015 Jan 30.

30.

Rapid screening for phenotype-genotype associations by linear transformations of genomic evaluations.

Gualdrón Duarte JL, Cantet RJ, Bates RO, Ernst CW, Raney NE, Steibel JP.

BMC Bioinformatics. 2014 Jul 19;15:246. doi: 10.1186/1471-2105-15-246.

31.

Estimation of U.S. Yorkshire breed composition using genomic data.

Huang Y, Bates RO, Ernst CW, Fix JS, Steibel JP.

J Anim Sci. 2014 Apr;92(4):1395-404. doi: 10.2527/jas.2013-6907. Epub 2014 Mar 18.

PMID:
24663210
32.

Accuracy of estimation of genomic breeding values in pigs using low-density genotypes and imputation.

Badke YM, Bates RO, Ernst CW, Fix J, Steibel JP.

G3 (Bethesda). 2014 Apr 16;4(4):623-31. doi: 10.1534/g3.114.010504.

33.

Regulatory T Cell Activity and Signs of T Cell Unresponsiveness in Bovine Paratuberculosis.

Roussey JA, Steibel JP, Coussens PM.

Front Vet Sci. 2014 Oct 21;1:20. doi: 10.3389/fvets.2014.00020. eCollection 2014.

34.

Evaluating statistical analysis models for RNA sequencing experiments.

Reeb PD, Steibel JP.

Front Genet. 2013 Sep 17;4:178. doi: 10.3389/fgene.2013.00178. eCollection 2013.

35.

Effects of exercise on markers of venous remodeling in lungs of horses.

Stack A, Derksen FJ, Sordillo LM, Williams KJ, Stick JA, Brandenberger C, Steibel JP, Robinson NE.

Am J Vet Res. 2013 Sep;74(9):1231-8. doi: 10.2460/ajvr.74.9.1231.

PMID:
23977896
36.

Effects of sex pheromones and sexual maturation on locomotor activity in female sea lamprey (Petromyzon marinus).

Walaszczyk EJ, Johnson NS, Steibel JP, Li W.

J Biol Rhythms. 2013 Jun;28(3):218-26. doi: 10.1177/0748730413488994.

PMID:
23735501
37.

Genotype imputation accuracy in a F2 pig population using high density and low density SNP panels.

Gualdrón Duarte JL, Bates RO, Ernst CW, Raney NE, Cantet RJ, Steibel JP.

BMC Genet. 2013 May 8;14:38. doi: 10.1186/1471-2156-14-38.

38.

Molecular advances in QTL discovery and application in pig breeding.

Ernst CW, Steibel JP.

Trends Genet. 2013 Apr;29(4):215-24. doi: 10.1016/j.tig.2013.02.002. Epub 2013 Mar 14. Review.

PMID:
23498076
39.

Cows and herds constitute distinct hierarchical levels of heterogeneity in the variability of and association between milk yield and pregnancy outcome in dairy cows.

Bello NM, Steibel JP, Erskine RJ, Tempelman RJ.

J Dairy Sci. 2013 Apr;96(4):2314-2326. doi: 10.3168/jds.2012-6264. Epub 2013 Feb 22.

40.

Methods of tagSNP selection and other variables affecting imputation accuracy in swine.

Badke YM, Bates RO, Ernst CW, Schwab C, Fix J, Van Tassell CP, Steibel JP.

BMC Genet. 2013 Feb 21;14:8. doi: 10.1186/1471-2156-14-8.

41.

Characterizing differential individual response to porcine reproductive and respiratory syndrome virus infection through statistical and functional analysis of gene expression.

Arceo ME, Ernst CW, Lunney JK, Choi I, Raney NE, Huang T, Tuggle CK, Rowland RR, Steibel JP.

Front Genet. 2013 Jan 16;3:321. doi: 10.3389/fgene.2012.00321. eCollection 2012.

42.
43.

Effect of amino acids supply in reduced crude protein diets on performance, efficiency of mammary uptake, and transporter gene expression in lactating sows.

Manjarin R, Zamora V, Wu G, Steibel JP, Kirkwood RN, Taylor NP, Wils-Plotz E, Trifilo K, Trottier NL.

J Anim Sci. 2012 Sep;90(9):3088-100. doi: 10.2527/jas.2011-4338. Epub 2012 May 14.

PMID:
22585816
44.

Evaluation of QTL for carcass merit and meat quality traits in a US commercial Duroc population.

Choi I, Bates RO, Raney NE, Steibel JP, Ernst CW.

Meat Sci. 2012 Oct;92(2):132-8. doi: 10.1016/j.meatsci.2012.04.023. Epub 2012 Apr 21.

PMID:
22578477
45.

Hierarchical Bayesian modeling of heterogeneous cluster- and subject-level associations between continuous and binary outcomes in dairy production.

Bello NM, Steibel JP, Tempelman RJ.

Biom J. 2012 Mar;54(2):230-48. doi: 10.1002/bimj.201100055.

PMID:
22522379
46.

Identifying putative candidate genes and pathways involved in immune responses to porcine reproductive and respiratory syndrome virus (PRRSV) infection.

Wysocki M, Chen H, Steibel JP, Kuhar D, Petry D, Bates J, Johnson R, Ernst CW, Lunney JK.

Anim Genet. 2012 Jun;43(3):328-32. doi: 10.1111/j.1365-2052.2011.02251.x. Epub 2011 Sep 19.

PMID:
22486506
47.

Identification of Carcass and Meat Quality QTL in an F(2) Duroc × Pietrain Pig Resource Population Using Different Least-Squares Analysis Models.

Choi I, Steibel JP, Bates RO, Raney NE, Rumph JM, Ernst CW.

Front Genet. 2011 May 2;2:18. doi: 10.3389/fgene.2011.00018. eCollection 2011.

48.

Estimation of linkage disequilibrium in four US pig breeds.

Badke YM, Bates RO, Ernst CW, Schwab C, Steibel JP.

BMC Genomics. 2012 Jan 17;13:24. doi: 10.1186/1471-2164-13-24.

49.

Transcriptional profiling during foetal skeletal muscle development of Piau and Yorkshire-Landrace cross-bred pigs.

Sollero BP, Guimarães SE, Rilington VD, Tempelman RJ, Raney NE, Steibel JP, Guimarães JD, Lopes PS, Lopes MS, Ernst CW.

Anim Genet. 2011 Dec;42(6):600-12. doi: 10.1111/j.1365-2052.2011.02186.x. Epub 2011 Mar 24.

PMID:
22035001
50.

A simple analytical and experimental procedure for selection of reference genes for reverse-transcription quantitative PCR normalization data.

Manjarin R, Trottier NL, Weber PS, Liesman JS, Taylor NP, Steibel JP.

J Dairy Sci. 2011 Oct;94(10):4950-61. doi: 10.3168/jds.2011-4147.

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