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Items: 27

1.

FindSim: A Framework for Integrating Neuronal Data and Signaling Models.

Viswan NA, HarshaRani GV, Stefan MI, Bhalla US.

Front Neuroinform. 2018 Jun 26;12:38. doi: 10.3389/fninf.2018.00038. eCollection 2018.

2.

We need to talk about manels: the problem of implicit gender bias in sport and exercise medicine.

Bekker S, Ahmed OH, Bakare U, Blake TA, Brooks AM, Davenport TE, Mendonça LM, Fortington LV, Himawan M, Kemp JL, Litzy K, Loh RF, MacDonald J, McKay CD, Mosler AB, Mountjoy M, Pederson A, Stefan MI, Stokes E, Vassallo AJ, Whittaker JL.

Br J Sports Med. 2018 Oct;52(20):1287-1289. doi: 10.1136/bjsports-2018-099084. Epub 2018 Mar 17. No abstract available.

PMID:
29550755
3.

Women are underrepresented in computational biology: An analysis of the scholarly literature in biology, computer science and computational biology.

Bonham KS, Stefan MI.

PLoS Comput Biol. 2017 Oct 12;13(10):e1005134. doi: 10.1371/journal.pcbi.1005134. eCollection 2017 Oct.

4.

Cooperative binding mitigates the high-dose hook effect.

Roy RD, Rosenmund C, Stefan MI.

BMC Syst Biol. 2017 Aug 14;11(1):74. doi: 10.1186/s12918-017-0447-8.

5.

Cooperativity: a competition of definitions.

Stefan MI.

J Math Biol. 2017 Jun;74(7):1679-1681. doi: 10.1007/s00285-016-1069-2. Epub 2016 Oct 26.

6.

The systems biology format converter.

Rodriguez N, Pettit JB, Dalle Pezze P, Li L, Henry A, van Iersel MP, Jalowicki G, Kutmon M, Natarajan KN, Tolnay D, Stefan MI, Evelo CT, Le Novère N.

BMC Bioinformatics. 2016 Apr 5;17:154. doi: 10.1186/s12859-016-1000-2.

7.

Direct UV photolysis of selected pharmaceuticals, personal care products and endocrine disruptors in aqueous solution.

Carlson JC, Stefan MI, Parnis JM, Metcalfe CD.

Water Res. 2015 Nov 1;84:350-61. doi: 10.1016/j.watres.2015.04.013. Epub 2015 May 14.

PMID:
26282501
8.

The quantitative methods boot camp: teaching quantitative thinking and computing skills to graduate students in the life sciences.

Stefan MI, Gutlerner JL, Born RT, Springer M.

PLoS Comput Biol. 2015 Apr 16;11(4):e1004208. doi: 10.1371/journal.pcbi.1004208. eCollection 2015 Apr.

9.

Ten simple rules for finishing your PhD.

Marino J, Stefan MI, Blackford S.

PLoS Comput Biol. 2014 Dec 4;10(12):e1003954. doi: 10.1371/journal.pcbi.1003954. eCollection 2014 Dec. No abstract available.

10.

Multi-state modeling of biomolecules.

Stefan MI, Bartol TM, Sejnowski TJ, Kennedy MB.

PLoS Comput Biol. 2014 Sep 25;10(9):e1003844. doi: 10.1371/journal.pcbi.1003844. eCollection 2014 Sep.

11.

Biophysical properties of presynaptic short-term plasticity in hippocampal neurons: insights from electrophysiology, imaging and mechanistic models.

Dutta Roy R, Stefan MI, Rosenmund C.

Front Cell Neurosci. 2014 May 22;8:141. doi: 10.3389/fncel.2014.00141. eCollection 2014. Review.

12.

Cooperative binding.

Stefan MI, Le Novère N.

PLoS Comput Biol. 2013;9(6):e1003106. doi: 10.1371/journal.pcbi.1003106. Epub 2013 Jun 27.

13.

Calcium input frequency, duration and amplitude differentially modulate the relative activation of calcineurin and CaMKII.

Li L, Stefan MI, Le Novère N.

PLoS One. 2012;7(9):e43810. doi: 10.1371/journal.pone.0043810. Epub 2012 Sep 4.

15.

Structural analysis and stochastic modelling suggest a mechanism for calmodulin trapping by CaMKII.

Stefan MI, Marshall DP, Le Novère N.

PLoS One. 2012;7(1):e29406. doi: 10.1371/journal.pone.0029406. Epub 2012 Jan 18.

16.

Efficient removal of microcystin-LR by UV-C/H₂O₂ in synthetic and natural water samples.

He X, Pelaez M, Westrick JA, O'Shea KE, Hiskia A, Triantis T, Kaloudis T, Stefan MI, de la Cruz AA, Dionysiou DD.

Water Res. 2012 Apr 1;46(5):1501-10. doi: 10.1016/j.watres.2011.11.009. Epub 2011 Nov 23.

PMID:
22177771
17.

Ten simple rules for getting help from online scientific communities.

Dall'Olio GM, Marino J, Schubert M, Keys KL, Stefan MI, Gillespie CS, Poulain P, Shameer K, Sugar R, Invergo BM, Jensen LJ, Bertranpetit J, Laayouni H.

PLoS Comput Biol. 2011 Sep;7(9):e1002202. doi: 10.1371/journal.pcbi.1002202. Epub 2011 Sep 29. No abstract available.

18.

BioModels Database: An enhanced, curated and annotated resource for published quantitative kinetic models.

Li C, Donizelli M, Rodriguez N, Dharuri H, Endler L, Chelliah V, Li L, He E, Henry A, Stefan MI, Snoep JL, Hucka M, Le Novère N, Laibe C.

BMC Syst Biol. 2010 Jun 29;4:92. doi: 10.1186/1752-0509-4-92.

19.

Photocatalytic degradation of dichlorvos in aqueous TiO2 suspensions.

Oncescu T, Stefan MI, Oancea P.

Environ Sci Pollut Res Int. 2010 Jun;17(5):1158-66. doi: 10.1007/s11356-009-0292-4. Epub 2010 Feb 10.

PMID:
20143169
20.

Ligand depletion in vivo modulates the dynamic range and cooperativity of signal transduction.

Edelstein SJ, Stefan MI, Le Novère N.

PLoS One. 2010 Jan 5;5(1):e8449. doi: 10.1371/journal.pone.0008449.

21.

Computing phenomenologic Adair-Klotz constants from microscopic MWC parameters.

Stefan MI, Edelstein SJ, Le Novère N.

BMC Syst Biol. 2009 Jul 14;3:68. doi: 10.1186/1752-0509-3-68.

22.

An allosteric model of calmodulin explains differential activation of PP2B and CaMKII.

Stefan MI, Edelstein SJ, Le Novère N.

Proc Natl Acad Sci U S A. 2008 Aug 5;105(31):10768-73. doi: 10.1073/pnas.0804672105. Epub 2008 Jul 31. Erratum in: Proc Natl Acad Sci U S A. 2008 Dec 2;105(48):19024.

23.

Trichloroethene degradation by UV/H2O2 advanced oxidation process: product study and kinetic modeling.

Li K, Stefan MI, Crittenden JC.

Environ Sci Technol. 2007 Mar 1;41(5):1696-703.

PMID:
17396662
24.

The iodide/iodate actinometer in UV disinfection: determination of the fluence rate distribution in UV reactors.

Rahn RO, Bolton J, Stefan MI.

Photochem Photobiol. 2006 Mar-Apr;82(2):611-5.

PMID:
16613521
25.

UV photolysis of trichloroethylene: product study and kinetic modeling.

Li K, Stefan MI, Crittenden JC.

Environ Sci Technol. 2004 Dec 15;38(24):6685-93.

PMID:
15669328
26.

Quantum yield of the iodide-iodate chemical actinometer: dependence on wavelength and concentrations.

Rahn RO, Stefan MI, Bolton JR, Goren E, Shaw PS, Lykke KR.

Photochem Photobiol. 2003 Aug;78(2):146-52.

PMID:
12945582
27.

Optimal methods for quenching H2O2 residuals prior to UFC testing.

Liu W, Andrews SA, Stefan MI, Bolton JR.

Water Res. 2003 Sep;37(15):3697-703.

PMID:
12867337

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