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Items: 1 to 50 of 333

1.

Genomic characterization of a well-differentiated grade 3 pancreatic neuroendocrine tumor.

Williamson LM, Steel M, Grewal JK, Thibodeau ML, Zhao EY, Loree JM, Yang KC, Gorski SM, Mungall AJ, Mungall KL, Moore RA, Marra MA, Laskin J, Renouf DJ, Schaeffer DF, Jones SJM.

Cold Spring Harb Mol Case Stud. 2019 Jun 3;5(3). pii: a003814. doi: 10.1101/mcs.a003814. Print 2019 Jun.

2.

Swapping Birth and Death: Symmetries and Transformations in Phylodynamic Models.

Stadler T, Steel M.

Syst Biol. 2019 May 28. pii: syz039. doi: 10.1093/sysbio/syz039. [Epub ahead of print]

PMID:
31135030
3.

A class of phylogenetic networks reconstructable from ancestral profiles.

Erdős PL, Semple C, Steel M.

Math Biosci. 2019 Jul;313:33-40. doi: 10.1016/j.mbs.2019.04.009. Epub 2019 May 8.

PMID:
31077680
4.

Autocatalytic networks in biology: structural theory and algorithms.

Steel M, Hordijk W, Xavier JC.

J R Soc Interface. 2019 Feb 28;16(151):20180808. doi: 10.1098/rsif.2018.0808.

PMID:
30958202
5.

Suspended mid-infrared waveguides for Stimulated Brillouin Scattering.

Schmidt MK, Poulton CG, Mashanovich GZ, Reed GT, Eggleton BJ, Steel MJ.

Opt Express. 2019 Feb 18;27(4):4976-4989. doi: 10.1364/OE.27.004976.

PMID:
30876105
6.

Molecular Diversity Required for the Formation of Autocatalytic Sets.

Hordijk W, Steel M, Kauffman SA.

Life (Basel). 2019 Mar 1;9(1). pii: E23. doi: 10.3390/life9010023.

7.

Quantifying the accuracy of ancestral state prediction in a phylogenetic tree under maximum parsimony.

Herbst L, Li H, Steel M.

J Math Biol. 2019 May;78(6):1953-1979. doi: 10.1007/s00285-019-01330-x. Epub 2019 Feb 13.

PMID:
30758663
8.

Autocatalytic Networks at the Basis of Life's Origin and Organization.

Hordijk W, Steel M.

Life (Basel). 2018 Dec 8;8(4). pii: E62. doi: 10.3390/life8040062. Review.

9.

Vitamin D deficiency, endothelial function and bone biomarkers in post-kidney transplantation patients from North India.

Yadav AK, Tiwana S, Steel M, Ramachandran R, Kaski JC, Jha V, Banerjee D.

Int Urol Nephrol. 2019 Jan;51(1):181-186. doi: 10.1007/s11255-018-2014-7. Epub 2018 Nov 19.

10.

Tree-based networks: characterisations, metrics, and support trees.

Pons JC, Semple C, Steel M.

J Math Biol. 2019 Mar;78(4):899-918. doi: 10.1007/s00285-018-1296-9. Epub 2018 Oct 3.

PMID:
30283985
11.

PGE2 production at sites of tissue injury promotes an anti-inflammatory neutrophil phenotype and determines the outcome of inflammation resolution in vivo.

Loynes CA, Lee JA, Robertson AL, Steel MJ, Ellett F, Feng Y, Levy BD, Whyte MKB, Renshaw SA.

Sci Adv. 2018 Sep 5;4(9):eaar8320. doi: 10.1126/sciadv.aar8320. eCollection 2018 Sep.

12.

Elastic Purcell Effect.

Schmidt MK, Helt LG, Poulton CG, Steel MJ.

Phys Rev Lett. 2018 Aug 10;121(6):064301. doi: 10.1103/PhysRevLett.121.064301.

PMID:
30141687
13.

Species notions that combine phylogenetic trees and phenotypic partitions.

Hoppe A, Türpitz S, Steel M.

J Math Biol. 2019 Jan;78(1-2):117-134. doi: 10.1007/s00285-018-1269-z. Epub 2018 Jul 24.

PMID:
30043242
14.

A multi-step transcriptional cascade underlies vascular regeneration in vivo.

Shirali AS, Romay MC, McDonald AI, Su T, Steel ME, Iruela-Arispe ML.

Sci Rep. 2018 Apr 3;8(1):5430. doi: 10.1038/s41598-018-23653-3.

15.

Phylogenetic Flexibility via Hall-Type Inequalities and Submodularity.

Huber KT, Moulton V, Steel M.

Bull Math Biol. 2019 Feb;81(2):598-617. doi: 10.1007/s11538-018-0419-1. Epub 2018 Mar 27.

16.

Digital waveguide adiabatic passage part 2: experiment.

Ng V, Vaitkus JA, Chaboyer ZJ, Nguyen T, Dawes JM, Withford MJ, Greentree AD, Steel MJ.

Opt Express. 2017 Feb 6;25(3):2552-2559. doi: 10.1364/OE.25.002552.

PMID:
29519099
17.

On the information content of discrete phylogenetic characters.

Bordewich M, Deutschmann IM, Fischer M, Kasbohm E, Semple C, Steel M.

J Math Biol. 2018 Sep;77(3):527-544. doi: 10.1007/s00285-017-1198-2. Epub 2017 Dec 16.

PMID:
29248985
18.

Effect of dark counts on single-photon heralding with quasi-number-resolving detection schemes.

Helt LG, Steel MJ.

Opt Lett. 2017 Dec 1;42(23):4792-4795. doi: 10.1364/OL.42.004792.

PMID:
29216111
19.

Evolutionary isolation and phylogenetic diversity loss under random extinction events.

Steel M, Pourfaraj V, Chaudhary A, Mooers A.

J Theor Biol. 2018 Feb 7;438:151-155. doi: 10.1016/j.jtbi.2017.11.005. Epub 2017 Nov 13.

PMID:
29146280
20.

A note on random catalytic branching processes.

Steel M, Kauffman S.

J Theor Biol. 2018 Jan 21;437:222-224. doi: 10.1016/j.jtbi.2017.10.024.

PMID:
29080779
21.

Lasing in ring resonators by stimulated Brillouin scattering in the presence of nonlinear loss.

Mirnaziry SR, Wolff C, Steel MJ, Morrison B, Eggleton BJ, Poulton CG.

Opt Express. 2017 Oct 2;25(20):23619-23633. doi: 10.1364/OE.25.023619.

PMID:
29041313
22.

Autocatalytic networks in cognition and the origin of culture.

Gabora L, Steel M.

J Theor Biol. 2017 Oct 27;431:87-95. doi: 10.1016/j.jtbi.2017.07.022. Epub 2017 Jul 25.

23.

Non-communicable diseases and related risk behaviors among men and women living with HIV in Cambodia: findings from a cross-sectional study.

Chhoun P, Ngin C, Tuot S, Pal K, Steel M, Dionisio J, Pearson H, Mburu G, Brody C, Yi S.

Int J Equity Health. 2017 Jul 14;16(1):125. doi: 10.1186/s12939-017-0622-y.

24.

Minimum triplet covers of binary phylogenetic X-trees.

Huber KT, Moulton V, Steel M.

J Math Biol. 2017 Dec;75(6-7):1827-1840. doi: 10.1007/s00285-017-1117-6. Epub 2017 Jun 12.

25.

Digital waveguide adiabatic passage part 1: theory.

Vaitkus JA, Steel MJ, Greentree AD.

Opt Express. 2017 Mar 6;25(5):5466-5479. doi: 10.1364/OE.25.005466.

PMID:
28380807
26.

FOLFOX and intensified split-course chemoradiation as initial treatment for rectal cancer with synchronous metastases.

Bird T, Michael M, Bressel M, Chu J, Chander S, Cooray P, McKendrick J, Jefford M, Heriot A, Steel M, Leong T, Ngan S.

Acta Oncol. 2017 May;56(5):646-652. doi: 10.1080/0284186X.2017.1296584. Epub 2017 Mar 16.

PMID:
28301974
27.

The optimal rate for resolving a near-polytomy in a phylogeny.

Steel M, Leuenberger C.

J Theor Biol. 2017 May 7;420:174-179. doi: 10.1016/j.jtbi.2017.02.037. Epub 2017 Mar 3.

PMID:
28263815
28.

Parasitic Photon-Pair Suppression via Photonic Stop-Band Engineering.

Helt LG, Brańczyk AM, Liscidini M, Steel MJ.

Phys Rev Lett. 2017 Feb 17;118(7):073603. doi: 10.1103/PhysRevLett.118.073603. Epub 2017 Feb 17.

PMID:
28256861
29.

Bayesian Phylogenetic Estimation of Clade Ages Supports Trans-Atlantic Dispersal of Cichlid Fishes.

Matschiner M, Musilová Z, Barth JM, Starostová Z, Salzburger W, Steel M, Bouckaert R.

Syst Biol. 2017 Jan 1;66(1):3-22. doi: 10.1093/sysbio/syw076.

PMID:
28173588
30.

Can We "Future-Proof" Consensus Trees?

Bryant D, Francis A, Steel M.

Syst Biol. 2017 Jul 1;66(4):611-619. doi: 10.1093/sysbio/syx030.

PMID:
28169402
31.

Chasing the tail: The emergence of autocatalytic networks.

Hordijk W, Steel M.

Biosystems. 2017 Feb;152:1-10. doi: 10.1016/j.biosystems.2016.12.002. Epub 2016 Dec 25. Review.

PMID:
28027958
32.

A simple statistical test of taxonomic or functional homogeneity using replicated microbiome sequencing samples.

Huson DH, Steel M, El-Hadidi M, Mitra S, Peter S, Willmann M.

J Biotechnol. 2017 May 20;250:45-50. doi: 10.1016/j.jbiotec.2016.10.020. Epub 2016 Oct 27.

33.

Survival Impact of Adjuvant Chemotherapy for Resected Locally Advanced Rectal Adenocarcinoma.

Tay RY, Jamnagerwalla M, Steel M, Wong HL, McKendrick JJ, Faragher I, Kosmider S, Hastie I, Desai J, Tacey M, Gibbs P, Wong R.

Clin Colorectal Cancer. 2017 Jun;16(2):e45-e54. doi: 10.1016/j.clcc.2016.09.011. Epub 2016 Oct 6.

PMID:
27825672
34.

On-chip generation of heralded photon-number states.

Vergyris P, Meany T, Lunghi T, Sauder G, Downes J, Steel MJ, Withford MJ, Alibart O, Tanzilli S.

Sci Rep. 2016 Oct 24;6:35975. doi: 10.1038/srep35975.

35.

Dysphoria is a risk factor for depression in medically ill older people.

Mukaetova-Ladinska EB, Steel M, Coppock M, Cosker G, James P, Scully A, McNally RJ.

Int J Geriatr Psychiatry. 2016 Nov;31(11):1233-1240. doi: 10.1002/gps.4432. Epub 2016 Feb 2.

PMID:
26834033
36.

Phylogenetic mixtures and linear invariants for equal input models.

Casanellas M, Steel M.

J Math Biol. 2017 Apr;74(5):1107-1138. doi: 10.1007/s00285-016-1055-8. Epub 2016 Sep 7.

PMID:
27604275
37.

Impact of Surgical Complications Following Resection of Locally Advanced Rectal Adenocarcinoma on Adjuvant Chemotherapy Delivery and Survival Outcomes.

Jamnagerwalla M, Tay R, Steel M, Keck J, Jones I, Faragher I, Gibbs P, Wong R.

Dis Colon Rectum. 2016 Oct;59(10):916-24. doi: 10.1097/DCR.0000000000000659.

PMID:
27602922
38.

Domain engineering algorithm for practical and effective photon sources.

Tambasco JL, Boes A, Helt LG, Steel MJ, Mitchell A.

Opt Express. 2016 Aug 22;24(17):19616-26. doi: 10.1364/OE.24.019616.

PMID:
27557240
39.

Circulating tumor DNA analysis detects minimal residual disease and predicts recurrence in patients with stage II colon cancer.

Tie J, Wang Y, Tomasetti C, Li L, Springer S, Kinde I, Silliman N, Tacey M, Wong HL, Christie M, Kosmider S, Skinner I, Wong R, Steel M, Tran B, Desai J, Jones I, Haydon A, Hayes T, Price TJ, Strausberg RL, Diaz LA Jr, Papadopoulos N, Kinzler KW, Vogelstein B, Gibbs P.

Sci Transl Med. 2016 Jul 6;8(346):346ra92. doi: 10.1126/scitranslmed.aaf6219.

40.

Engineering integrated photonics for heralded quantum gates.

Meany T, Biggerstaff DN, Broome MA, Fedrizzi A, Delanty M, Steel MJ, Gilchrist A, Marshall GD, White AG, Withford MJ.

Sci Rep. 2016 Jun 10;6:25126. doi: 10.1038/srep25126.

41.

Impact of anastomotic leak on recurrence and survival after colorectal cancer surgery: a BioGrid Australia analysis.

Sammour T, Hayes IP, Jones IT, Steel MC, Faragher I, Gibbs P.

ANZ J Surg. 2018 Jan;88(1-2):E6-E10. doi: 10.1111/ans.13648. Epub 2016 Jun 3.

PMID:
27255690
42.

Folding and unfolding phylogenetic trees and networks.

Huber KT, Moulton V, Steel M, Wu T.

J Math Biol. 2016 Dec;73(6-7):1761-1780. Epub 2016 Apr 23.

43.

Active temporal multiplexing of indistinguishable heralded single photons.

Xiong C, Zhang X, Liu Z, Collins MJ, Mahendra A, Helt LG, Steel MJ, Choi DY, Chae CJ, Leong PH, Eggleton BJ.

Nat Commun. 2016 Mar 21;7:10853. doi: 10.1038/ncomms10853.

44.

QUANTUM OPTICS. The time is right for multiphoton entangled states.

Peacock AC, Steel MJ.

Science. 2016 Mar 11;351(6278):1152-3. doi: 10.1126/science.aaf2919. No abstract available.

PMID:
26965612
45.

Stimulated Brillouin scattering in silicon/chalcogenide slot waveguides.

Mirnaziry SR, Wolff C, Steel MJ, Eggleton BJ, Poulton CG.

Opt Express. 2016 Mar 7;24(5):4786-4800. doi: 10.1364/OE.24.004786.

PMID:
29092307
46.

"I don't know enough to feel comfortable using them:" Women's knowledge of and perceived barriers to long-acting reversible contraceptives on a college campus.

Hall KS, Ela E, Zochowski MK, Caldwell A, Moniz M, McAndrew L, Steel M, Challa S, Dalton VK, Ernst S.

Contraception. 2016 Jun;93(6):556-64. doi: 10.1016/j.contraception.2016.02.007. Epub 2016 Feb 13.

47.

Comment on "Tibor Gánti and Robert Rosen" by Athel Cornish-Bowden.

Hordijk W, Steel M.

J Theor Biol. 2016 Mar 7;392:122-3. doi: 10.1016/j.jtbi.2015.11.020. Epub 2015 Nov 27. No abstract available.

PMID:
26640161
48.

Clinical and Pharmaceutical Solutions through Analysis (CPSA BRASIL 2015): on the way to innovation - pharmaceutical/analytical technology, regulation and knowledge management.

Needham S, Yates N, Barrientos R, Steel M, Lee M.

Bioanalysis. 2015 Dec;7(23):2977-9. doi: 10.4155/bio.15.216. Epub 2015 Nov 30.

49.

Measurement and Shaping of Biphoton Spectral Wave Functions.

Tischler N, Büse A, Helt LG, Juan ML, Piro N, Ghosh J, Steel MJ, Molina-Terriza G.

Phys Rev Lett. 2015 Nov 6;115(19):193602. doi: 10.1103/PhysRevLett.115.193602. Epub 2015 Nov 3.

PMID:
26588380
50.

Correction: Binaural Fusion and Listening Effort in Children Who Use Bilateral Cochlear Implants: A Psychoacoustic and Pupillometric Study.

Steel MM, Papsin BC, Gordon KA.

PLoS One. 2015 Oct 30;10(10):e0141945. doi: 10.1371/journal.pone.0141945. eCollection 2015. No abstract available.

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