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Items: 33

1.

Computational design and interpretation of single-RNA translation experiments.

Aguilera LU, Raymond W, Fox ZR, May M, Djokic E, Morisaki T, Stasevich TJ, Munsky B.

PLoS Comput Biol. 2019 Oct 16;15(10):e1007425. doi: 10.1371/journal.pcbi.1007425. eCollection 2019 Oct.

2.

Satb1 integrates DNA binding site geometry and torsional stress to differentially target nucleosome-dense regions.

Ghosh RP, Shi Q, Yang L, Reddick MP, Nikitina T, Zhurkin VB, Fordyce P, Stasevich TJ, Chang HY, Greenleaf WJ, Liphardt JT.

Nat Commun. 2019 Jul 19;10(1):3221. doi: 10.1038/s41467-019-11118-8.

3.

A genetically encoded probe for imaging nascent and mature HA-tagged proteins in vivo.

Zhao N, Kamijo K, Fox PD, Oda H, Morisaki T, Sato Y, Kimura H, Stasevich TJ.

Nat Commun. 2019 Jul 3;10(1):2947. doi: 10.1038/s41467-019-10846-1.

4.

Live-Cell Single RNA Imaging Reveals Bursts of Translational Frameshifting.

Lyon K, Aguilera LU, Morisaki T, Munsky B, Stasevich TJ.

Mol Cell. 2019 Jul 11;75(1):172-183.e9. doi: 10.1016/j.molcel.2019.05.002. Epub 2019 Jun 6.

PMID:
31178355
5.

Multicolour single-molecule tracking of mRNA interactions with RNP granules.

Moon SL, Morisaki T, Khong A, Lyon K, Parker R, Stasevich TJ.

Nat Cell Biol. 2019 Feb;21(2):162-168. doi: 10.1038/s41556-018-0263-4. Epub 2019 Jan 21.

6.

Quantifying Single mRNA Translation Kinetics in Living Cells.

Morisaki T, Stasevich TJ.

Cold Spring Harb Perspect Biol. 2018 Nov 1;10(11). pii: a032078. doi: 10.1101/cshperspect.a032078. Review.

PMID:
30385605
7.

Visualizing the Dynamics of Inactive X Chromosomes in Living Cells Using Antibody-Based Fluorescent Probes.

Sato Y, Stasevich TJ, Kimura H.

Methods Mol Biol. 2018;1861:91-102. doi: 10.1007/978-1-4939-8766-5_8.

PMID:
30218362
8.

She1 affects dynein through direct interactions with the microtubule and the dynein microtubule-binding domain.

Ecklund KH, Morisaki T, Lammers LG, Marzo MG, Stasevich TJ, Markus SM.

Nat Commun. 2017 Dec 15;8(1):2151. doi: 10.1038/s41467-017-02004-2.

9.

Imaging Translational and Post-Translational Gene Regulatory Dynamics in Living Cells with Antibody-Based Probes.

Lyon K, Stasevich TJ.

Trends Genet. 2017 May;33(5):322-335. doi: 10.1016/j.tig.2017.02.003. Epub 2017 Mar 27. Review.

10.

Real-time quantification of single RNA translation dynamics in living cells.

Morisaki T, Lyon K, DeLuca KF, DeLuca JG, English BP, Zhang Z, Lavis LD, Grimm JB, Viswanathan S, Looger LL, Lionnet T, Stasevich TJ.

Science. 2016 Jun 17;352(6292):1425-9. doi: 10.1126/science.aaf0899. Epub 2016 May 5.

11.

Visualizing posttranslational and epigenetic modifications of endogenous proteins in vivo.

Kimura H, Hayashi-Takanaka Y, Stasevich TJ, Sato Y.

Histochem Cell Biol. 2015 Aug;144(2):101-9. doi: 10.1007/s00418-015-1344-0. Epub 2015 Jul 3. Review.

12.

High-performance probes for light and electron microscopy.

Viswanathan S, Williams ME, Bloss EB, Stasevich TJ, Speer CM, Nern A, Pfeiffer BD, Hooks BM, Li WP, English BP, Tian T, Henry GL, Macklin JJ, Patel R, Gerfen CR, Zhuang X, Wang Y, Rubin GM, Looger LL.

Nat Methods. 2015 Jun;12(6):568-76. doi: 10.1038/nmeth.3365. Epub 2015 Apr 27.

13.

Regulation of RNA polymerase II activation by histone acetylation in single living cells.

Stasevich TJ, Hayashi-Takanaka Y, Sato Y, Maehara K, Ohkawa Y, Sakata-Sogawa K, Tokunaga M, Nagase T, Nozaki N, McNally JG, Kimura H.

Nature. 2014 Dec 11;516(7530):272-5. doi: 10.1038/nature13714. Epub 2014 Sep 21.

PMID:
25252976
14.

Evaluation of chemical fluorescent dyes as a protein conjugation partner for live cell imaging.

Hayashi-Takanaka Y, Stasevich TJ, Kurumizaka H, Nozaki N, Kimura H.

PLoS One. 2014 Sep 3;9(9):e106271. doi: 10.1371/journal.pone.0106271. eCollection 2014.

15.

Quantifying histone and RNA polymerase II post-translational modification dynamics in mother and daughter cells.

Stasevich TJ, Sato Y, Nozaki N, Kimura H.

Methods. 2014 Dec;70(2-3):77-88. doi: 10.1016/j.ymeth.2014.08.002. Epub 2014 Aug 12.

PMID:
25131722
16.

Quantifying transcription factor kinetics: at work or at play?

Mueller F, Stasevich TJ, Mazza D, McNally JG.

Crit Rev Biochem Mol Biol. 2013 Sep-Oct;48(5):492-514. doi: 10.3109/10409238.2013.833891. Epub 2013 Sep 11. Review. Erratum in: Crit Rev Biochem Mol Biol. 2014 Nov-Dec;49(6):533.

PMID:
24025032
17.

Genetically encoded system to track histone modification in vivo.

Sato Y, Mukai M, Ueda J, Muraki M, Stasevich TJ, Horikoshi N, Kujirai T, Kita H, Kimura T, Hira S, Okada Y, Hayashi-Takanaka Y, Obuse C, Kurumizaka H, Kawahara A, Yamagata K, Nozaki N, Kimura H.

Sci Rep. 2013;3:2436. doi: 10.1038/srep02436.

18.

Convergence of chromatin binding estimates in live cells.

Mazza D, Mueller F, Stasevich TJ, McNally JG.

Nat Methods. 2013 Aug;10(8):691-2. doi: 10.1038/nmeth.2573. No abstract available.

PMID:
23900248
19.

Monitoring dynamic binding of chromatin proteins in vivo by fluorescence correlation spectroscopy and temporal image correlation spectroscopy.

Mazza D, Stasevich TJ, Karpova TS, McNally JG.

Methods Mol Biol. 2012;833:177-200. doi: 10.1007/978-1-61779-477-3_12.

PMID:
22183595
20.

Assembly of the transcription machinery: ordered and stable, random and dynamic, or both?

Stasevich TJ, McNally JG.

Chromosoma. 2011 Dec;120(6):533-45. doi: 10.1007/s00412-011-0340-y. Epub 2011 Nov 3. Review.

PMID:
22048163
21.

Tracking epigenetic histone modifications in single cells using Fab-based live endogenous modification labeling.

Hayashi-Takanaka Y, Yamagata K, Wakayama T, Stasevich TJ, Kainuma T, Tsurimoto T, Tachibana M, Shinkai Y, Kurumizaka H, Nozaki N, Kimura H.

Nucleic Acids Res. 2011 Aug;39(15):6475-88. doi: 10.1093/nar/gkr343. Epub 2011 May 16.

22.

Highly stable loading of Mcm proteins onto chromatin in living cells requires replication to unload.

Kuipers MA, Stasevich TJ, Sasaki T, Wilson KA, Hazelwood KL, McNally JG, Davidson MW, Gilbert DM.

J Cell Biol. 2011 Jan 10;192(1):29-41. doi: 10.1083/jcb.201007111.

23.

Cross-validating FRAP and FCS to quantify the impact of photobleaching on in vivo binding estimates.

Stasevich TJ, Mueller F, Michelman-Ribeiro A, Rosales T, Knutson JR, McNally JG.

Biophys J. 2010 Nov 3;99(9):3093-101. doi: 10.1016/j.bpj.2010.08.059.

24.

FRAP and kinetic modeling in the analysis of nuclear protein dynamics: what do we really know?

Mueller F, Mazza D, Stasevich TJ, McNally JG.

Curr Opin Cell Biol. 2010 Jun;22(3):403-11. doi: 10.1016/j.ceb.2010.03.002. Epub 2010 Apr 21. Review.

25.

Core histone hyperacetylation impacts cooperative behavior and high-affinity binding of histone H1 to chromatin.

Raghuram N, Carrero G, Stasevich TJ, McNally JG, Th'ng J, Hendzel MJ.

Biochemistry. 2010 Jun 1;49(21):4420-31. doi: 10.1021/bi100296z.

PMID:
20411992
26.

Dissecting the binding mechanism of the linker histone in live cells: an integrated FRAP analysis.

Stasevich TJ, Mueller F, Brown DT, McNally JG.

EMBO J. 2010 Apr 7;29(7):1225-34. doi: 10.1038/emboj.2010.24. Epub 2010 Mar 11.

27.

Materials science. Epitaxial growth writ large.

Einstein TL, Stasevich TJ.

Science. 2010 Jan 22;327(5964):423-4. doi: 10.1126/science.1184947. No abstract available.

PMID:
20093465
28.

Direct measurement of association and dissociation rates of DNA binding in live cells by fluorescence correlation spectroscopy.

Michelman-Ribeiro A, Mazza D, Rosales T, Stasevich TJ, Boukari H, Rishi V, Vinson C, Knutson JR, McNally JG.

Biophys J. 2009 Jul 8;97(1):337-46. doi: 10.1016/j.bpj.2009.04.027.

29.

Impurity decoration for crystal shape control: C60 on Ag(111).

Stasevich TJ, Tao C, Cullen WG, Williams ED, Einstein TL.

Phys Rev Lett. 2009 Feb 27;102(8):085501. Epub 2009 Feb 27.

PMID:
19257751
30.

Effects of impurities on surface morphology: some examples.

Bh Hamouda A, Stasevich TJ, Pimpinelli A, Einstein TL.

J Phys Condens Matter. 2009 Feb 25;21(8):084215. doi: 10.1088/0953-8984/21/8/084215. Epub 2009 Jan 30.

PMID:
21817367
31.

Concurrent fast and slow cycling of a transcriptional activator at an endogenous promoter.

Karpova TS, Kim MJ, Spriet C, Nalley K, Stasevich TJ, Kherrouche Z, Heliot L, McNally JG.

Science. 2008 Jan 25;319(5862):466-9. doi: 10.1126/science.1150559.

32.

Metal-molecule interface fluctuations.

Tao C, Stasevich TJ, Cullen WG, Einstein TL, Williams ED.

Nano Lett. 2007 Jun;7(6):1495-9. Epub 2007 Mar 13.

PMID:
17352508
33.

Distinctive fluctuations in a confined geometry.

Degawa M, Stasevich TJ, Cullen WG, Pimpinelli A, Einstein TL, Williams ED.

Phys Rev Lett. 2006 Aug 25;97(8):080601. Epub 2006 Aug 21.

PMID:
17026286

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