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Items: 28

1.

Detection of Abrin-Like and Prepropulchellin-Like Toxin Genes and Transcripts Using Whole Genome Sequencing and Full-Length Transcript Sequencing of Abrus precatorius.

Hovde BT, Daligault HE, Hanschen ER, Kunde YA, Johnson MB, Starkenburg SR, Johnson SL.

Toxins (Basel). 2019 Nov 25;11(12). pii: E691. doi: 10.3390/toxins11120691.

2.

Nuclear Genome Assembly of the Microalga Nannochloropsis salina CCMP1776.

Ohan JA, Hovde BT, Zhang XL, Davenport KW, Chertkov O, Han C, Twary SN, Starkenburg SR.

Microbiol Resour Announc. 2019 Oct 31;8(44). pii: e00750-19. doi: 10.1128/MRA.00750-19.

3.

Development of a high-productivity, halophilic, thermotolerant microalga Picochlorum renovo.

Dahlin LR, Gerritsen AT, Henard CA, Van Wychen S, Linger JG, Kunde Y, Hovde BT, Starkenburg SR, Posewitz MC, Guarnieri MT.

Commun Biol. 2019 Oct 23;2:388. doi: 10.1038/s42003-019-0620-2. eCollection 2019.

4.

High-Quality Draft Genome Sequence of the Green Alga Tetraselmis striata (Chlorophyta) Generated from PacBio Sequencing.

Steadman Tyler CR, Hovde BT, Daligault HE, Zhang XL, Kunde Y, Marrone BL, Twary SN, Starkenburg SR.

Microbiol Resour Announc. 2019 Oct 24;8(43). pii: e00780-19. doi: 10.1128/MRA.00780-19.

5.

Gut microbiota and their putative metabolic functions in fragmented Bengal tiger population of Nepal.

Karmacharya D, Manandhar P, Manandhar S, Sherchan AM, Sharma AN, Joshi J, Bista M, Bajracharya S, Awasthi NP, Sharma N, Llewellyn B, Waits LP, Thapa K, Kelly MJ, Vuyisich M, Starkenburg SR, Hero JM, Hughes J, Wultsch C, Bertola L, Fountain-Jones NM, Sinha AK.

PLoS One. 2019 Aug 29;14(8):e0221868. doi: 10.1371/journal.pone.0221868. eCollection 2019.

6.

High-throughput phenotyping of cell-to-cell interactions in gel microdroplet pico-cultures.

Ohan J, Pelle B, Nath P, Huang JH, Hovde B, Vuyisich M, Dichosa AE, Starkenburg SR.

Biotechniques. 2019 May;66(5):218-224. doi: 10.2144/btn-2018-0124.

7.

RNA-Binding Protein RBP-P Is Required for Glutelin and Prolamine mRNA Localization in Rice Endosperm Cells.

Tian L, Chou HL, Zhang L, Hwang SK, Starkenburg SR, Doroshenk KA, Kumamaru T, Okita TW.

Plant Cell. 2018 Oct;30(10):2529-2552. doi: 10.1105/tpc.18.00321. Epub 2018 Sep 6.

8.

Selective sets of mRNAs localize to extracellular paramural bodies in a rice glup6 mutant.

Yang Y, Chou HL, Crofts AJ, Zhang L, Tian L, Washida H, Fukuda M, Kumamaru T, Oviedo OJ, Starkenburg SR, Okita TW.

J Exp Bot. 2018 Oct 12;69(21):5045-5058. doi: 10.1093/jxb/ery297.

9.

Nuclear, Chloroplast, and Mitochondrial Genome Sequences of the Prospective Microalgal Biofuel Strain Picochlorum soloecismus.

Gonzalez-Esquer CR, Twary SN, Hovde BT, Starkenburg SR.

Genome Announc. 2018 Jan 25;6(4). pii: e01498-17. doi: 10.1128/genomeA.01498-17.

10.

Draft Nuclear Genome, Complete Chloroplast Genome, and Complete Mitochondrial Genome for the Biofuel/Bioproduct Feedstock Species Scenedesmus obliquus Strain DOE0152z.

Starkenburg SR, Polle JEW, Hovde B, Daligault HE, Davenport KW, Huang A, Neofotis P, McKie-Krisberg Z.

Genome Announc. 2017 Aug 10;5(32). pii: e00617-17. doi: 10.1128/genomeA.00617-17.

11.

Biostimulation and microbial community profiling reveal insights on RDX transformation in groundwater.

Wang D, Boukhalfa H, Marina O, Ware DS, Goering TJ, Sun F, Daligault HE, Lo CC, Vuyisich M, Starkenburg SR.

Microbiologyopen. 2017 Apr;6(2). doi: 10.1002/mbo3.423. Epub 2016 Nov 17.

12.

Genome Sequences of Eight Bacterial Species Found in Coculture with the Haptophyte Chrysochromulina tobin.

Fixen KR, Starkenburg SR, Hovde BT, Johnson SL, Deodato CR, Daligault HE, Davenport KW, Harwood CS, Cattolico RA.

Genome Announc. 2016 Nov 3;4(6). pii: e01162-16. doi: 10.1128/genomeA.01162-16.

13.

Genome Sequence and Transcriptome Analyses of Chrysochromulina tobin: Metabolic Tools for Enhanced Algal Fitness in the Prominent Order Prymnesiales (Haptophyceae).

Hovde BT, Deodato CR, Hunsperger HM, Ryken SA, Yost W, Jha RK, Patterson J, Monnat RJ Jr, Barlow SB, Starkenburg SR, Cattolico RA.

PLoS Genet. 2015 Sep 23;11(9):e1005469. doi: 10.1371/journal.pgen.1005469. eCollection 2015.

14.

Tunable Riboregulator Switches for Post-transcriptional Control of Gene Expression.

Krishnamurthy M, Hennelly SP, Dale T, Starkenburg SR, Martí-Arbona R, Fox DT, Twary SN, Sanbonmatsu KY, Unkefer CJ.

ACS Synth Biol. 2015 Dec 18;4(12):1326-34. doi: 10.1021/acssynbio.5b00041. Epub 2015 Jul 27.

15.

The mitochondrial and chloroplast genomes of the haptophyte Chrysochromulina tobin contain unique repeat structures and gene profiles.

Hovde BT, Starkenburg SR, Hunsperger HM, Mercer LD, Deodato CR, Jha RK, Chertkov O, Monnat RJ Jr, Cattolico RA.

BMC Genomics. 2014 Jul 17;15:604. doi: 10.1186/1471-2164-15-604.

16.

A pangenomic analysis of the Nannochloropsis organellar genomes reveals novel genetic variations in key metabolic genes.

Starkenburg SR, Kwon KJ, Jha RK, McKay C, Jacobs M, Chertkov O, Twary S, Rocap G, Cattolico RA.

BMC Genomics. 2014 Mar 19;15:212. doi: 10.1186/1471-2164-15-212.

17.

Targeted and shotgun metagenomic approaches provide different descriptions of dryland soil microbial communities in a manipulated field study.

Steven B, Gallegos-Graves LV, Starkenburg SR, Chain PS, Kuske CR.

Environ Microbiol Rep. 2012 Apr;4(2):248-56. doi: 10.1111/j.1758-2229.2012.00328.x. Epub 2012 Feb 10.

PMID:
23757280
18.

Pathogen comparative genomics in the next-generation sequencing era: genome alignments, pangenomics and metagenomics.

Hu B, Xie G, Lo CC, Starkenburg SR, Chain PS.

Brief Funct Genomics. 2011 Nov;10(6):322-33. doi: 10.1093/bfgp/elr042. Review.

PMID:
22199376
19.

Genome of the cyanobacterium Microcoleus vaginatus FGP-2, a photosynthetic ecosystem engineer of arid land soil biocrusts worldwide.

Starkenburg SR, Reitenga KG, Freitas T, Johnson S, Chain PS, Garcia-Pichel F, Kuske CR.

J Bacteriol. 2011 Sep;193(17):4569-70. doi: 10.1128/JB.05138-11. Epub 2011 Jun 24.

20.

Genomics for key players in the N cycle from guinea pigs to the next frontier.

Chain PS, Xie G, Starkenburg SR, Scholz MB, Beckloff N, Lo CC, Davenport KW, Reitenga KG, Daligault HE, Detter JC, Freitas TA, Gleasner CD, Green LD, Han CS, McMurry KK, Meincke LJ, Shen X, Zeytun A.

Methods Enzymol. 2011;496:289-318. doi: 10.1016/B978-0-12-386489-5.00012-9. Review.

PMID:
21514469
21.

Expression of a putative nitrite reductase and the reversible inhibition of nitrite-dependent respiration by nitric oxide in Nitrobacter winogradskyi Nb-255.

Starkenburg SR, Arp DJ, Bottomley PJ.

Environ Microbiol. 2008 Nov;10(11):3036-42. doi: 10.1111/j.1462-2920.2008.01763.x.

PMID:
18973623
22.

D-Lactate metabolism and the obligate requirement for CO2 during growth on nitrite by the facultative lithoautotroph Nitrobacter hamburgensis.

Starkenburg SR, Arp DJ, Bottomley PJ.

Microbiology. 2008 Aug;154(Pt 8):2473-2481. doi: 10.1099/mic.0.2008/018085-0.

PMID:
18667580
23.

Importance of type II secretion for survival of Legionella pneumophila in tap water and in amoebae at low temperatures.

Söderberg MA, Dao J, Starkenburg SR, Cianciotto NP.

Appl Environ Microbiol. 2008 Sep;74(17):5583-8. doi: 10.1128/AEM.00067-08. Epub 2008 Jul 11.

24.

Complete genome sequence of Nitrosospira multiformis, an ammonia-oxidizing bacterium from the soil environment.

Norton JM, Klotz MG, Stein LY, Arp DJ, Bottomley PJ, Chain PS, Hauser LJ, Land ML, Larimer FW, Shin MW, Starkenburg SR.

Appl Environ Microbiol. 2008 Jun;74(11):3559-72. doi: 10.1128/AEM.02722-07. Epub 2008 Apr 4.

25.

Complete genome sequence of Nitrobacter hamburgensis X14 and comparative genomic analysis of species within the genus Nitrobacter.

Starkenburg SR, Larimer FW, Stein LY, Klotz MG, Chain PS, Sayavedra-Soto LA, Poret-Peterson AT, Gentry ME, Arp DJ, Ward B, Bottomley PJ.

Appl Environ Microbiol. 2008 May;74(9):2852-63. doi: 10.1128/AEM.02311-07. Epub 2008 Mar 7.

26.

Genome sequence of the chemolithoautotrophic nitrite-oxidizing bacterium Nitrobacter winogradskyi Nb-255.

Starkenburg SR, Chain PS, Sayavedra-Soto LA, Hauser L, Land ML, Larimer FW, Malfatti SA, Klotz MG, Bottomley PJ, Arp DJ, Hickey WJ.

Appl Environ Microbiol. 2006 Mar;72(3):2050-63.

27.

Siderophore activity among members of the Legionella genus.

Starkenburg SR, Casey JM, Cianciotto NP.

Curr Microbiol. 2004 Sep;49(3):203-7.

PMID:
15386105
28.

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