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Phenological tracking associated with increased salmon consumption by brown bears.

Deacy WW, Erlenbach JA, Leacock WB, Stanford JA, Robbins CT, Armstrong JB.

Sci Rep. 2018 Jul 20;8(1):11008. doi: 10.1038/s41598-018-29425-3.


Short Term Development and Fate of MGE-Like Neural Progenitor Cells in Jaundiced and Non-Jaundiced Rat Brain.

Yang FC, Draper J, Smith PG, Vivian JL, Shapiro SM, Stanford JA.

Cell Transplant. 2018 Apr;27(4):654-665. doi: 10.1177/0963689718766327. Epub 2018 May 30.


Region-specific differences in bioenergetic proteins and protein response to acute high fat diet in brains of low and high capacity runner rats.

Gan L, Ma D, Li M, Yang FC, Rogers RS, Wheatley JL, Koch LG, Britton SL, Thyfault JP, Geiger PC, Stanford JA.

Neurosci Lett. 2018 May 1;674:49-53. doi: 10.1016/j.neulet.2018.03.009. Epub 2018 Mar 6.


The K-INBRE symposium: a 10-institution collaboration to improve undergraduate education.

Velasquez SE, Abraham K, Burnett TG, Chapin B, Hendry WJ 3rd, Leung S, Madden ME, Rider V, Stanford JA, Ward RE, Chapes SK.

Adv Physiol Educ. 2018 Mar 1;42(1):104-110. doi: 10.1152/advan.00093.2017.


Impaired Cu-Zn Superoxide Dismutase (SOD1) and Calcineurin (Cn) Interaction in ALS: A Presumed Consequence for TDP-43 and Zinc Aggregation in Tg SOD1G93A Rodent Spinal Cord Tissue.

Kim JM, Billington E, Reyes A, Notarianni T, Sage J, Agbas E, Taylor M, Monast I, Stanford JA, Agbas A.

Neurochem Res. 2018 Jan 3. doi: 10.1007/s11064-017-2461-z. [Epub ahead of print]


Methods and Tips for Intravenous Administration of Adeno-associated Virus to Rats and Evaluation of Central Nervous System Transduction.

Grames MS, Jackson KL, Dayton RD, Stanford JA, Klein RL.

J Vis Exp. 2017 Aug 25;(126). doi: 10.3791/55994.


Phenological synchronization disrupts trophic interactions between Kodiak brown bears and salmon.

Deacy WW, Armstrong JB, Leacock WB, Robbins CT, Gustine DD, Ward EJ, Erlenbach JA, Stanford JA.

Proc Natl Acad Sci U S A. 2017 Sep 26;114(39):10432-10437. doi: 10.1073/pnas.1705248114. Epub 2017 Aug 21.


Fate of Neural Progenitor Cells Transplanted Into Jaundiced and Nonjaundiced Rat Brains.

Yang FC, Riordan SM, Winter M, Gan L, Smith PG, Vivian JL, Shapiro SM, Stanford JA.

Cell Transplant. 2017 Apr 13;26(4):605-611. doi: 10.3727/096368917X694840. Epub 2017 Feb 3.


Ancient and methane-derived carbon subsidizes contemporary food webs.

DelVecchia AG, Stanford JA, Xu X.

Nat Commun. 2016 Nov 8;7:13163. doi: 10.1038/ncomms13163.


Do beaver dams reduce habitat connectivity and salmon productivity in expansive river floodplains?

Malison RL, Kuzishchin KV, Stanford JA.

PeerJ. 2016 Sep 1;4:e2403. doi: 10.7717/peerj.2403. eCollection 2016.


Effects of Tongue Force Training on Bulbar Motor Function in the Female SOD1-G93A Rat Model of Amyotrophic Lateral Sclerosis.

Ma D, Shuler JM, Kumar A, Stanford QR, Tungtur S, Nishimune H, Stanford JA.

Neurorehabil Neural Repair. 2017 Feb;31(2):147-156. doi: 10.1177/1545968316666956. Epub 2016 Sep 24.


Extracellular Mitochondria and Mitochondrial Components Act as Damage-Associated Molecular Pattern Molecules in the Mouse Brain.

Wilkins HM, Koppel SJ, Weidling IW, Roy N, Ryan LN, Stanford JA, Swerdlow RH.

J Neuroimmune Pharmacol. 2016 Dec;11(4):622-628. Epub 2016 Aug 25.


Kodiak brown bears surf the salmon red wave: direct evidence from GPS collared individuals.

Deacy W, Leacock W, Armstrong JB, Stanford JA.

Ecology. 2016 May;97(5):1091-8.


A time-lapse photography method for monitoring salmon (Oncorhynchus spp.) passage and abundance in streams.

Deacy WW, Leacock WB, Eby LA, Stanford JA.

PeerJ. 2016 Jun 14;4:e2120. doi: 10.7717/peerj.2120. eCollection 2016.


A high fat dietĀ alters metabolic and bioenergetic function in the brain: A magnetic resonance spectroscopy study.

Raider K, Ma D, Harris JL, Fuentes I, Rogers RS, Wheatley JL, Geiger PC, Yeh HW, Choi IY, Brooks WM, Stanford JA.

Neurochem Int. 2016 Jul;97:172-80. doi: 10.1016/j.neuint.2016.04.008. Epub 2016 Apr 26.


Climate variables explain neutral and adaptive variation within salmonid metapopulations: the importance of replication in landscape genetics.

Hand BK, Muhlfeld CC, Wade AA, Kovach RP, Whited DC, Narum SR, Matala AP, Ackerman MW, Garner BA, Kimball JS, Stanford JA, Luikart G.

Mol Ecol. 2016 Feb;25(3):689-705. doi: 10.1111/mec.13517.


Effects of discontinuing a high-fat diet on mitochondrial proteins and 6-hydroxydopamine-induced dopamine depletion in rats.

Ma D, Shuler JM, Raider KD, Rogers RS, Wheatley JL, Geiger PC, Stanford JA.

Brain Res. 2015 Jul 10;1613:49-58. doi: 10.1016/j.brainres.2015.03.053. Epub 2015 Apr 8.


Long-term atmospheric deposition of nitrogen, phosphorus and sulfate in a large oligotrophic lake.

Ellis BK, Craft JA, Stanford JA.

PeerJ. 2015 Mar 19;3:e841. doi: 10.7717/peerj.841. eCollection 2015.


Performance of salmon fishery portfolios across western North America.

Griffiths JR, Schindler DE, Armstrong JB, Scheuerell MD, Whited DC, Clark RA, Hilborn R, Holt CA, Lindley ST, Stanford JA, Volk EC.

J Appl Ecol. 2014 Dec;51(6):1554-1563. Epub 2014 Oct 3.


Hyperactivity in the Gunn rat model of neonatal jaundice: age-related attenuation and emergence of gait deficits.

Stanford JA, Shuler JM, Fowler SC, Stanford KG, Ma D, Bittel DC, Le Pichon JB, Shapiro SM.

Pediatr Res. 2015 Mar;77(3):434-9. doi: 10.1038/pr.2014.199. Epub 2014 Dec 17.


Differential effects of intrastriatal 6-hydroxydopamine on cell number and morphology in midbrain dopaminergic subregions of the rat.

Healy-Stoffel M, Omar Ahmad S, Stanford JA, Levant B.

Brain Res. 2014 Jul 29;1574:113-9. doi: 10.1016/j.brainres.2014.05.045. Epub 2014 Jun 9.


Differential effects of amphetamine and GBR-12909 on orolingual motor function in young vs aged F344/BN rats.

Smittkamp S, Spalding H, Zhang H, Stanford JA.

Psychopharmacology (Berl). 2014 Dec;231(24):4695-701. doi: 10.1007/s00213-014-3620-4. Epub 2014 Jun 13.


The effects of riverine physical complexity on anadromy and genetic diversity in steelhead or rainbow trout Oncorhynchus mykiss around the Pacific Rim.

McPhee MV, Whited DC, Kuzishchin KV, Stanford JA.

J Fish Biol. 2014 Jul;85(1):132-50. doi: 10.1111/jfb.12286. Epub 2014 Apr 28.


Relationships between tongue motility, grip force, and survival in SOD1-G93A rats.

Smittkamp SE, Spalding HN, Brown JW, Yeh HW, Stanford JA.

Physiol Behav. 2014 Feb 10;125:17-20. doi: 10.1016/j.physbeh.2013.11.010. Epub 2013 Nov 27.


Role of exercise in maintaining the integrity of the neuromuscular junction.

Nishimune H, Stanford JA, Mori Y.

Muscle Nerve. 2014 Mar;49(3):315-24. doi: 10.1002/mus.24095. Epub 2013 Dec 17. Review.


SOD1-G93A mice exhibit muscle-fiber-type-specific decreases in glucose uptake in the absence of whole-body changes in metabolism.

Smittkamp SE, Morris JK, Bomhoff GL, Chertoff ME, Geiger PC, Stanford JA.

Neurodegener Dis. 2014;13(1):29-37. doi: 10.1159/000351606. Epub 2013 Sep 6.


Altered nucleolar morphology in substantia nigra dopamine neurons following 6-hydroxydopamine lesion in rats.

Healy-Stoffel M, Ahmad SO, Stanford JA, Levant B.

Neurosci Lett. 2013 Jun 24;546:26-30. doi: 10.1016/j.neulet.2013.04.033. Epub 2013 May 2.


A novel use of combined tyrosine hydroxylase and silver nucleolar staining to determine the effects of a unilateral intrastriatal 6-hydroxydopamine lesion in the substantia nigra: a stereological study.

Healy-Stoffel M, Ahmad SO, Stanford JA, Levant B.

J Neurosci Methods. 2012 Sep 30;210(2):187-94. doi: 10.1016/j.jneumeth.2012.07.013. Epub 2012 Jul 28.


Tongue force and tongue motility are differently affected by unilateral vs bilateral nigrostriatal dopamine depletion in rats.

Nuckolls AL, Worley C, Leto C, Zhang H, Morris JK, Stanford JA.

Behav Brain Res. 2012 Oct 1;234(2):343-8. doi: 10.1016/j.bbr.2012.07.003. Epub 2012 Jul 14.


Active zone protein Bassoon co-localizes with presynaptic calcium channel, modifies channel function, and recovers from aging related loss by exercise.

Nishimune H, Numata T, Chen J, Aoki Y, Wang Y, Starr MP, Mori Y, Stanford JA.

PLoS One. 2012;7(6):e38029. doi: 10.1371/journal.pone.0038029. Epub 2012 Jun 6.


Effects of unilateral nigrostriatal dopamine depletion on peripheral glucose tolerance and insulin signaling in middle aged rats.

Morris JK, Seim NB, Bomhoff GL, Geiger PC, Stanford JA.

Neurosci Lett. 2011 Oct 31;504(3):219-22. doi: 10.1016/j.neulet.2011.09.027. Epub 2011 Sep 21.


Young and middle-aged rats exhibit isometric forelimb force control deficits in a model of early-stage Parkinson's disease.

Bethel-Brown CS, Morris JK, Stanford JA.

Behav Brain Res. 2011 Nov 20;225(1):97-103. doi: 10.1016/j.bbr.2011.07.002. Epub 2011 Jul 8.


Insulin resistance impairs nigrostriatal dopamine function.

Morris JK, Bomhoff GL, Gorres BK, Davis VA, Kim J, Lee PP, Brooks WM, Gerhardt GA, Geiger PC, Stanford JA.

Exp Neurol. 2011 Sep;231(1):171-80. doi: 10.1016/j.expneurol.2011.06.005. Epub 2011 Jun 15.


Long-term effects of a trophic cascade in a large lake ecosystem.

Ellis BK, Stanford JA, Goodman D, Stafford CP, Gustafson DL, Beauchamp DA, Chess DW, Craft JA, Deleray MA, Hansen BS.

Proc Natl Acad Sci U S A. 2011 Jan 18;108(3):1070-5. doi: 10.1073/pnas.1013006108. Epub 2011 Jan 3.


Neurodegeneration in an animal model of Parkinson's disease is exacerbated by a high-fat diet.

Morris JK, Bomhoff GL, Stanford JA, Geiger PC.

Am J Physiol Regul Integr Comp Physiol. 2010 Oct;299(4):R1082-90. doi: 10.1152/ajpregu.00449.2010. Epub 2010 Aug 11.


Within-session analysis of amphetamine-elicited rotation behavior reveals differences between young adult and middle-aged F344/BN rats with partial unilateral striatal dopamine depletion.

Bethel-Brown CS, Zhang H, Fowler SC, Chertoff ME, Watson GS, Stanford JA.

Pharmacol Biochem Behav. 2010 Oct;96(4):423-8. doi: 10.1016/j.pbb.2010.06.014. Epub 2010 Jul 1.


Measures of bulbar and spinal motor function, muscle innervation, and mitochondrial function in ALS rats.

Smittkamp SE, Spalding HN, Brown JW, Gupte AA, Chen J, Nishimune H, Geiger PC, Stanford JA.

Behav Brain Res. 2010 Jul 29;211(1):48-57. doi: 10.1016/j.bbr.2010.03.007. Epub 2010 Mar 6.


Age-related changes in HSP25 expression in basal ganglia and cortex of F344/BN rats.

Gupte AA, Morris JK, Zhang H, Bomhoff GL, Geiger PC, Stanford JA.

Neurosci Lett. 2010 Mar 19;472(2):90-3. doi: 10.1016/j.neulet.2010.01.049. Epub 2010 Feb 6.


Habitat heterogeneity and associated microbial community structure in a small-scale floodplain hyporheic flow path.

Lowell JL, Gordon N, Engstrom D, Stanford JA, Holben WE, Gannon JE.

Microb Ecol. 2009 Oct;58(3):611-20. doi: 10.1007/s00248-009-9525-9. Epub 2009 May 22.


Bilateral effects of unilateral GDNF administration on dopamine- and GABA-regulating proteins in the rat nigrostriatal system.

Salvatore MF, Gerhardt GA, Dayton RD, Klein RL, Stanford JA.

Exp Neurol. 2009 Sep;219(1):197-207. doi: 10.1016/j.expneurol.2009.05.013. Epub 2009 May 19.


Effects of tongue force training on orolingual motor cortical representation.

Guggenmos DJ, Barbay S, Bethel-Brown C, Nudo RJ, Stanford JA.

Behav Brain Res. 2009 Jul 19;201(1):229-32. doi: 10.1016/j.bbr.2009.02.020. Epub 2009 Feb 27.


Measures of striatal insulin resistance in a 6-hydroxydopamine model of Parkinson's disease.

Morris JK, Zhang H, Gupte AA, Bomhoff GL, Stanford JA, Geiger PC.

Brain Res. 2008 Nov 13;1240:185-95. doi: 10.1016/j.brainres.2008.08.089. Epub 2008 Sep 11.


Acute and rebound effects of lorazepam on orolingual motor function in young versus aged Fischer 344/Brown Norway rats.

Zhang H, Stanford JA.

Behav Pharmacol. 2008 Mar;19(2):161-5. doi: 10.1097/FBP.0b013e3282f62c53.


Time-course and characterization of orolingual motor deficits in B6SJL-Tg(SOD1-G93A)1Gur/J mice.

Smittkamp SE, Brown JW, Stanford JA.

Neuroscience. 2008 Jan 24;151(2):613-21. Epub 2007 Oct 30.


Age-related changes in orolingual motor function in F344 vs F344/BN rats.

Zhang H, Bethel CS, Smittkamp SE, Stanford JA.

Physiol Behav. 2008 Feb 27;93(3):461-6. Epub 2007 Oct 12.


Climate, hydrologic disturbance, and succession: drivers of floodplain pattern.

Whited DC, Lorang MS, Harner MJ, Hauer FR, Kimball JS, Stanford JA.

Ecology. 2007 Apr;88(4):940-53.


Measuring forelimb force control and movement in Fischer 344/Brown Norway rats: effects of age and lorazepam.

Stanford JA, Osterhaus GL, Vorontsova E, Fowler SC.

Behav Pharmacol. 2006 Dec;17(8):725-30.


Effects of stocking-up freshwater food webs.

Eby LA, Roach WJ, Crowder LB, Stanford JA.

Trends Ecol Evol. 2006 Oct;21(10):576-84. Epub 2006 Jul 7. Review.


Bilateral effects of unilateral intrastriatal GDNF on locomotor-excited and nonlocomotor-related striatal neurons in aged F344 rats.

Stanford JA, Salvatore MF, Joyce BM, Zhang H, Gash DM, Gerhardt GA.

Neurobiol Aging. 2007 Jan;28(1):156-65. Epub 2005 Nov 28.


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