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Items: 1 to 50 of 79

1.

The β-lactamase gene regulator AmpR is a tetramer that recognizes and binds the D-Ala-D-Ala motif of its repressor UDP-N-acetylmuramic acid (MurNAc)-pentapeptide.

Vadlamani G, Thomas MD, Patel TR, Donald LJ, Reeve TM, Stetefeld J, Standing KG, Vocadlo DJ, Mark BL.

J Biol Chem. 2015 Jan 30;290(5):2630-43. doi: 10.1074/jbc.M114.618199. Epub 2014 Dec 5.

2.

Tat peptide-calmodulin binding studies and bioinformatics of HIV-1 protein-calmodulin interactions.

McQueen P, Donald LJ, Vo TN, Nguyen DH, Griffiths H, Shojania S, Standing KG, O'Neil JD.

Proteins. 2011 Jul;79(7):2233-46. doi: 10.1002/prot.23048. Epub 2011 May 10.

PMID:
21560167
3.

Dual N- and C-terminal processing of citrus chlorophyllase precursor within the plastid membranes leads to the mature enzyme.

Azoulay-Shemer T, Harpaz-Saad S, Cohen-Peer R, Mett A, Spicer V, Lovat N, Krokhin O, Brand A, Gidoni D, Standing KG, Goldschmidt EE, Eyal Y.

Plant Cell Physiol. 2011 Jan;52(1):70-83. doi: 10.1093/pcp/pcq174. Epub 2010 Nov 11.

PMID:
21071427
4.

Predicting retention time shifts associated with variation of the gradient slope in peptide RP-HPLC.

Spicer V, Grigoryan M, Gotfrid A, Standing KG, Krokhin OV.

Anal Chem. 2010 Dec 1;82(23):9678-85. doi: 10.1021/ac102228a. Epub 2010 Nov 4.

PMID:
21049933
5.

Mass spectrometry following mild enzymatic digestion reveals phosphorylation of recombinant proteins in Escherichia coli through mechanisms involving direct nucleotide binding.

She YM, Xu X, Yakunin AF, Dhe-Paganon S, Donald LJ, Standing KG, Lee DC, Jia Z, Cyr TD.

J Proteome Res. 2010 Jun 4;9(6):3311-8. doi: 10.1021/pr9011987.

PMID:
20405931
6.

Identification of Variants of the High Plains virus Infecting Wheat in Kansas.

Seifers DL, Martin TJ, Harvey TL, Haber S, Krokhin O, Spicer V, Ying S, Standing KG.

Plant Dis. 2009 Dec;93(12):1265-1274. doi: 10.1094/PDIS-93-12-1265.

PMID:
30759510
7.

Urea as a protein destabilizing agent in electrospray ionisation.

Donald LJ, Collado VM, Galka JJ, O'Neil JD, Duckworth HW, Loewen PC, Standing KG.

Rapid Commun Mass Spectrom. 2009 Mar;23(6):788-92. doi: 10.1002/rcm.3941.

PMID:
19219845
8.

Characterization of a novel potyvirus isolated from maize in Israel.

Seifers DL, Salomon R, Marie-Jeanne V, Alliot B, Signoret P, Haber S, Loboda A, Ens W, She YM, Standing KG.

Phytopathology. 2000 May;90(5):505-13. doi: 10.1094/PHYTO.2000.90.5.505.

9.

Practical implementation of 2D HPLC scheme with accurate peptide retention prediction in both dimensions for high-throughput bottom-up proteomics.

Dwivedi RC, Spicer V, Harder M, Antonovici M, Ens W, Standing KG, Wilkins JA, Krokhin OV.

Anal Chem. 2008 Sep 15;80(18):7036-42. doi: 10.1021/ac800984n. Epub 2008 Aug 8.

PMID:
18686972
10.

Citrus chlorophyllase dynamics at ethylene-induced fruit color-break: a study of chlorophyllase expression, posttranslational processing kinetics, and in situ intracellular localization.

Azoulay Shemer T, Harpaz-Saad S, Belausov E, Lovat N, Krokhin O, Spicer V, Standing KG, Goldschmidt EE, Eyal Y.

Plant Physiol. 2008 Sep;148(1):108-18. doi: 10.1104/pp.108.124933. Epub 2008 Jul 16.

11.

Triticum mosaic virus: A New Virus Isolated from Wheat in Kansas.

Seifers DL, Martin TJ, Harvey TL, Fellers JP, Stack JP, Ryba-White M, Haber S, Krokhin O, Spicer V, Lovat N, Yamchuk A, Standing KG.

Plant Dis. 2008 May;92(5):808-817. doi: 10.1094/PDIS-92-5-0808.

PMID:
30769583
12.

Sequence-specific retention calculator. A family of peptide retention time prediction algorithms in reversed-phase HPLC: applicability to various chromatographic conditions and columns.

Spicer V, Yamchuk A, Cortens J, Sousa S, Ens W, Standing KG, Wilkins JA, Krokhin OV.

Anal Chem. 2007 Nov 15;79(22):8762-8. Epub 2007 Oct 16.

PMID:
17939646
13.

Formation of (bn-1 + H2O) ions by collisional activation of MALDI-formed peptide [M + H]+ ions in a QqTOF mass spectrometer.

She YM, Krokhin O, Spicer V, Loboda A, Garland G, Ens W, Standing KG, Westmore JB.

J Am Soc Mass Spectrom. 2007 Jun;18(6):1024-37. Epub 2007 Apr 5.

14.

Deamidation of -Asn-Gly- sequences during sample preparation for proteomics: Consequences for MALDI and HPLC-MALDI analysis.

Krokhin OV, Antonovici M, Ens W, Wilkins JA, Standing KG.

Anal Chem. 2006 Sep 15;78(18):6645-50.

PMID:
16970346
15.

Use of peptide retention time prediction for protein identification by off-line reversed-phase HPLC-MALDI MS/MS.

Krokhin OV, Ying S, Cortens JP, Ghosh D, Spicer V, Ens W, Standing KG, Beavis RC, Wilkins JA.

Anal Chem. 2006 Sep 1;78(17):6265-9.

PMID:
16944911
16.

Method for estimating the isotopic distributions of metabolically labeled proteins by MALDI-TOFMS: application to NMR samples.

Choudhary K, Spicer VL, Donald LJ, Duckworth HW, Ens W, Loewen PC, Standing KG.

Anal Chem. 2006 Aug 1;78(15):5419-23.

PMID:
16878877
18.

Determination and characterization of site-specific N-glycosylation using MALDI-Qq-TOF tandem mass spectrometry: case study with a plant protease.

Bykova NV, Rampitsch C, Krokhin O, Standing KG, Ens W.

Anal Chem. 2006 Feb 15;78(4):1093-103.

PMID:
16478099
19.

Hybrid quadrupole/time-of-flight mass spectrometers for analysis of biomolecules.

Ens W, Standing KG.

Methods Enzymol. 2005;402:49-78. Review.

PMID:
16401506
20.

Association of a Virus with Wheat Displaying Yellow Head Disease Symptoms in the Great Plains.

Seifers DL, Harvey TL, Martin TJ, Haber S, She YM, Ens W, Standing KG, Salomon R, Gera A.

Plant Dis. 2005 Aug;89(8):888-895. doi: 10.1094/PD-89-0888.

PMID:
30786523
21.

Multiple equilibria of the Escherichia coli chaperonin GroES revealed by mass spectrometry.

Donald LJ, Stokell DJ, Holliday NJ, Ens W, Standing KG, Duckworth HW.

Protein Sci. 2005 May;14(5):1375-9. Epub 2005 Mar 31.

22.

Global and site-specific detection of human integrin alpha 5 beta 1 glycosylation using tandem mass spectrometry and the StrOligo algorithm.

Ethier M, Krokhin O, Ens W, Standing KG, Wilkins JA, Perreault H.

Rapid Commun Mass Spectrom. 2005;19(5):721-7.

PMID:
15702487
23.

Biochemical and proteomics approaches to characterize topoisomerase IIalpha cysteines and DNA as targets responsible for cisplatin-induced inhibition of topoisomerase IIalpha.

Hasinoff BB, Wu X, Krokhin OV, Ens W, Standing KG, Nitiss JL, Sivaram T, Giorgianni A, Yang S, Jiang Y, Yalowich JC.

Mol Pharmacol. 2005 Mar;67(3):937-47. Epub 2004 Dec 15.

PMID:
15602006
24.

Characterization of a distinct Johnsongrass mosaic virus strain isolated from sorghum in Nigeria.

Seifers DL, Haber S, Ens W, She YM, Standing KG, Salomon R.

Arch Virol. 2005 Mar;150(3):557-76. Epub 2004 Oct 20.

PMID:
15503220
26.

Lectin affinity as an approach to the proteomic analysis of membrane glycoproteins.

Ghosh D, Krokhin O, Antonovici M, Ens W, Standing KG, Beavis RC, Wilkins JA.

J Proteome Res. 2004 Jul-Aug;3(4):841-50.

PMID:
15359739
27.

Biological and Molecular Variability Among High Plains virus Isolates.

Seifers DL, She YM, Harvey TL, Martin TJ, Haber S, Ens W, Standing KG, Louie R, Gordon DT.

Plant Dis. 2004 Aug;88(8):824-829. doi: 10.1094/PDIS.2004.88.8.824.

PMID:
30812509
28.

An improved model for prediction of retention times of tryptic peptides in ion pair reversed-phase HPLC: its application to protein peptide mapping by off-line HPLC-MALDI MS.

Krokhin OV, Craig R, Spicer V, Ens W, Standing KG, Beavis RC, Wilkins JA.

Mol Cell Proteomics. 2004 Sep;3(9):908-19. Epub 2004 Jul 6.

30.

Application of the StrOligo algorithm for the automated structure assignment of complex N-linked glycans from glycoproteins using tandem mass spectrometry.

Ethier M, Saba JA, Spearman M, Krokhin O, Butler M, Ens W, Standing KG, Perreault H.

Rapid Commun Mass Spectrom. 2003;17(24):2713-20.

PMID:
14673818
32.

Mass spectrometric based mapping of the disulfide bonding patterns of integrin alpha chains.

Krokhin OV, Cheng K, Sousa SL, Ens W, Standing KG, Wilkins JA.

Biochemistry. 2003 Nov 11;42(44):12950-9.

PMID:
14596610
33.

Peptide and protein de novo sequencing by mass spectrometry.

Standing KG.

Curr Opin Struct Biol. 2003 Oct;13(5):595-601. Review.

PMID:
14568614
34.

Characterization of the agent of "high plains disease": mass spectrometry determines the sequence of the disease-specific protein.

She YM, Seifers DL, Haber S, Ens W, Standing KG.

J Biol Chem. 2004 Jan 2;279(1):488-94. Epub 2003 Oct 14.

35.

Mass spectrometric characterization of proteins from the SARS virus: a preliminary report.

Krokhin O, Li Y, Andonov A, Feldmann H, Flick R, Jones S, Stroeher U, Bastien N, Dasuri KV, Cheng K, Simonsen JN, Perreault H, Wilkins J, Ens W, Plummer F, Standing KG.

Mol Cell Proteomics. 2003 May;2(5):346-56. Epub 2003 May 29.

36.
37.

Automated structural assignment of derivatized complex N-linked oligosaccharides from tandem mass spectra.

Ethier M, Saba JA, Ens W, Standing KG, Perreault H.

Rapid Commun Mass Spectrom. 2002;16(18):1743-54.

PMID:
12207362
38.

A study of immunoglobulin G glycosylation in monoclonal and polyclonal species by electrospray and matrix-assisted laser desorption/ionization mass spectrometry.

Saba JA, Kunkel JP, Jan DC, Ens WE, Standing KG, Butler M, Jamieson JC, Perreault H.

Anal Biochem. 2002 Jun 1;305(1):16-31.

PMID:
12018942
39.

A selenoprotein in the plant kingdom. Mass spectrometry confirms that an opal codon (UGA) encodes selenocysteine in Chlamydomonas reinhardtii gluththione peroxidase.

Fu LH, Wang XF, Eyal Y, She YM, Donald LJ, Standing KG, Ben-Hayyim G.

J Biol Chem. 2002 Jul 19;277(29):25983-91. Epub 2002 Apr 24.

40.

Hepatocyte [3H]-palmitate uptake: effect of albumin surface charge modification.

Burczynski FJ, Wang GQ, Elmadhoun B, She YM, Roberts MS, Standing KG.

Can J Physiol Pharmacol. 2001 Oct;79(10):868-75.

PMID:
11697746
41.

Matrix-assisted laser desorption/ionization quadrupole time-of-flight mass spectrometry: an elegant tool for peptidomics.

Verhaert P, Uttenweiler-Joseph S, de Vries M, Loboda A, Ens W, Standing KG.

Proteomics. 2001 Jan;1(1):118-31.

PMID:
11680891
42.

Mass spectrometric study of the Escherichia coli repressor proteins, Ic1R and Gc1R, and their complexes with DNA.

Donald LJ, Hosfield DJ, Cuvelier SL, Ens W, Standing KG, Duckworth HW.

Protein Sci. 2001 Jul;10(7):1370-80.

43.

Archived polyacrylamide gels as a resource for proteome characterization by mass spectrometry.

Shevchenko A, Loboda A, Ens W, Schraven B, Standing KG, Shevchenko A.

Electrophoresis. 2001 Apr;22(6):1194-203.

PMID:
11358147
44.

Charting the proteomes of organisms with unsequenced genomes by MALDI-quadrupole time-of-flight mass spectrometry and BLAST homology searching.

Shevchenko A, Sunyaev S, Loboda A, Shevchenko A, Bork P, Ens W, Standing KG.

Anal Chem. 2001 May 1;73(9):1917-26.

PMID:
11354471
45.

Quantitative proteomic analysis using a MALDI quadrupole time-of-flight mass spectrometer.

Griffin TJ, Gygi SP, Rist B, Aebersold R, Loboda A, Jilkine A, Ens W, Standing KG.

Anal Chem. 2001 Mar 1;73(5):978-86.

PMID:
11289445
46.

Determination of the complete amino acid sequence for the coat protein of brome mosaic virus by time-of-flight mass spectrometry. Evidence for mutations associated with change of propagation host.

She YM, Haber S, Seifers DL, Loboda A, Chernushevich I, Perreault H, Ens W, Standing KG.

J Biol Chem. 2001 Jun 8;276(23):20039-47. Epub 2001 Mar 26.

47.

On-membrane digestion of beta-casein for determination of phosphorylation sites by matrix-assisted laser desorption/ionization quadrupole/time-of-flight mass spectrometry.

Lee CH, McComb ME, Bromirski M, Jilkine A, Ens W, Standing KG, Perreault H.

Rapid Commun Mass Spectrom. 2001;15(3):191-202.

PMID:
11180550
48.

Total chemical synthesis and chemotactic activity of human S100A12 (EN-RAGE).

Miranda LP, Tao T, Jones A, Chernushevich I, Standing KG, Geczy CL, Alewood PF.

FEBS Lett. 2001 Jan 12;488(1-2):85-90.

49.

Studies of noncovalent complexes in an electrospray ionization/time-of-flight mass spectrometer.

Krutchinsky AN, Ayed A, Donald LJ, Ens W, Duckworth HW, Standing KG.

Methods Mol Biol. 2000;146:239-49. Review. No abstract available.

PMID:
10948506
50.

Characterization of plasma proteins adsorbed onto biomaterials. By MALDI-TOFMS.

Oleschuk RD, Mccomb ME, Chow A, Ens W, Standing KG, Perreault H, Marois Y, King M.

Biomaterials. 2000 Aug;21(16):1701-10.

PMID:
10905411

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