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Items: 20

1.

Hierarchical recruitment of competition alleviates working memory overload in a frontoparietal model.

Standage D, Paré M, Blohm G.

J Vis. 2019 Oct 1;19(12):8. doi: 10.1167/19.12.8.

PMID:
31621817
2.

Kevlar: A Mapping-Free Framework for Accurate Discovery of De Novo Variants.

Standage DS, Brown CT, Hormozdiari F.

iScience. 2019 Aug 30;18:28-36. doi: 10.1016/j.isci.2019.07.032. Epub 2019 Jul 23.

3.

On the Short-Lived Nature of Working Memory: Drift and Decay in a Population-coding model.

Cuthbert B, Standage D.

J Neurosci. 2018 Nov 28;38(48):10241-10243. doi: 10.1523/JNEUROSCI.1877-18.2018. No abstract available.

4.

Ionic mechanisms underlying tonic and burst firing behavior in subfornical organ neurons: a combined experimental and modeling study.

Medlock L, Shute L, Fry M, Standage D, Ferguson AV.

J Neurophysiol. 2018 Nov 1;120(5):2269-2281. doi: 10.1152/jn.00340.2018. Epub 2018 Aug 8.

PMID:
30089060
5.

Slot-like capacity and resource-like coding in a neural model of multiple-item working memory.

Standage D, Paré M.

J Neurophysiol. 2018 Oct 1;120(4):1945-1961. doi: 10.1152/jn.00778.2017. Epub 2018 Jun 27.

6.

xGDBvm: A Web GUI-Driven Workflow for Annotating Eukaryotic Genomes in the Cloud.

Duvick J, Standage DS, Merchant N, Brendel VP.

Plant Cell. 2016 Apr;28(4):840-54. doi: 10.1105/tpc.15.00933. Epub 2016 Mar 28.

7.

Genome, transcriptome and methylome sequencing of a primitively eusocial wasp reveal a greatly reduced DNA methylation system in a social insect.

Standage DS, Berens AJ, Glastad KM, Severin AJ, Brendel VP, Toth AL.

Mol Ecol. 2016 Apr;25(8):1769-84. doi: 10.1111/mec.13578. Epub 2016 Mar 15.

PMID:
26859767
8.

The khmer software package: enabling efficient nucleotide sequence analysis.

Crusoe MR, Alameldin HF, Awad S, Boucher E, Caldwell A, Cartwright R, Charbonneau A, Constantinides B, Edvenson G, Fay S, Fenton J, Fenzl T, Fish J, Garcia-Gutierrez L, Garland P, Gluck J, González I, Guermond S, Guo J, Gupta A, Herr JR, Howe A, Hyer A, Härpfer A, Irber L, Kidd R, Lin D, Lippi J, Mansour T, McA'Nulty P, McDonald E, Mizzi J, Murray KD, Nahum JR, Nanlohy K, Nederbragt AJ, Ortiz-Zuazaga H, Ory J, Pell J, Pepe-Ranney C, Russ ZN, Schwarz E, Scott C, Seaman J, Sievert S, Simpson J, Skennerton CT, Spencer J, Srinivasan R, Standage D, Stapleton JA, Steinman SR, Stein J, Taylor B, Trimble W, Wiencko HL, Wright M, Wyss B, Zhang Q, Zyme E, Brown CT.

F1000Res. 2015 Sep 25;4:900. doi: 10.12688/f1000research.6924.1. eCollection 2015.

9.

Toward a unified view of the speed-accuracy trade-off.

Standage D, Wang DH, Heitz RP, Simen P.

Front Neurosci. 2015 Apr 28;9:139. doi: 10.3389/fnins.2015.00139. eCollection 2015. No abstract available.

10.

Ca2+-induced uncoupling of Aplysia bag cell neurons.

Dargaei Z, Standage D, Groten CJ, Blohm G, Magoski NS.

J Neurophysiol. 2015 Feb 1;113(3):808-21. doi: 10.1152/jn.00603.2014. Epub 2014 Nov 19.

11.

Neural dynamics implement a flexible decision bound with a fixed firing rate for choice: a model-based hypothesis.

Standage D, Wang DH, Blohm G.

Front Neurosci. 2014 Oct 21;8:318. doi: 10.3389/fnins.2014.00318. eCollection 2014.

12.

On the neural implementation of the speed-accuracy trade-off.

Standage D, Blohm G, Dorris MC.

Front Neurosci. 2014 Aug 13;8:236. doi: 10.3389/fnins.2014.00236. eCollection 2014. Review.

13.

Calcium-dependent calcium decay explains STDP in a dynamic model of hippocampal synapses.

Standage D, Trappenberg T, Blohm G.

PLoS One. 2014 Jan 22;9(1):e86248. doi: 10.1371/journal.pone.0086248. eCollection 2014.

14.

Trading speed and accuracy by coding time: a coupled-circuit cortical model.

Standage D, You H, Wang DH, Dorris MC.

PLoS Comput Biol. 2013 Apr;9(4):e1003021. doi: 10.1371/journal.pcbi.1003021. Epub 2013 Apr 4.

15.

ParsEval: parallel comparison and analysis of gene structure annotations.

Standage DS, Brendel VP.

BMC Bioinformatics. 2012 Aug 1;13:187. doi: 10.1186/1471-2105-13-187.

16.

TAL Effector-Nucleotide Targeter (TALE-NT) 2.0: tools for TAL effector design and target prediction.

Doyle EL, Booher NJ, Standage DS, Voytas DF, Brendel VP, Vandyk JK, Bogdanove AJ.

Nucleic Acids Res. 2012 Jul;40(Web Server issue):W117-22. doi: 10.1093/nar/gks608. Epub 2012 Jun 12.

17.

Persistent storage capability impairs decision making in a biophysical network model.

Standage D, Paré M.

Neural Netw. 2011 Dec;24(10):1062-73. doi: 10.1016/j.neunet.2011.05.004. Epub 2011 May 19.

PMID:
21658905
18.

Gain modulation by an urgency signal controls the speed-accuracy trade-off in a network model of a cortical decision circuit.

Standage D, You H, Wang DH, Dorris MC.

Front Comput Neurosci. 2011 Feb 11;5:7. doi: 10.3389/fncom.2011.00007. eCollection 2011.

19.

Computational consequences of experimentally derived spike-time and weight dependent plasticity rules.

Standage D, Jalil S, Trappenberg T.

Biol Cybern. 2007 Jun;96(6):615-23. Epub 2007 Apr 28.

PMID:
17468882
20.

Modelling divided visual attention with a winner-take-all network.

Standage DI, Trappenberg TP, Klein RM.

Neural Netw. 2005 Jun-Jul;18(5-6):620-7.

PMID:
16087317

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