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A molecular mechanism for Wnt ligand-specific signaling.

Eubelen M, Bostaille N, Cabochette P, Gauquier A, Tebabi P, Dumitru AC, Koehler M, Gut P, Alsteens D, Stainier DYR, Garcia-Pino A, Vanhollebeke B.

Science. 2018 Jul 19. pii: eaat1178. doi: 10.1126/science.aat1178. [Epub ahead of print]


The potassium channel KCNJ13 is essential for smooth muscle cytoskeletal organization during mouse tracheal tubulogenesis.

Yin W, Kim HT, Wang S, Gunawan F, Wang L, Kishimoto K, Zhong H, Roman D, Preussner J, Guenther S, Graef V, Buettner C, Grohmann B, Looso M, Morimoto M, Mardon G, Offermanns S, Stainier DYR.

Nat Commun. 2018 Jul 19;9(1):2815. doi: 10.1038/s41467-018-05043-5.


HHEX is a transcriptional regulator of the VEGFC/FLT4/PROX1 signaling axis during vascular development.

Gauvrit S, Villasenor A, Strilic B, Kitchen P, Collins MM, Marín-Juez R, Guenther S, Maischein HM, Fukuda N, Canham MA, Brickman JM, Bogue CW, Jayaraman PS, Stainier DYR.

Nat Commun. 2018 Jul 13;9(1):2704. doi: 10.1038/s41467-018-05039-1.


Zebrafish mutants and TEAD reporters reveal essential functions for Yap and Taz in posterior cardinal vein development.

Astone M, Lai JKH, Dupont S, Stainier DYR, Argenton F, Vettori A.

Sci Rep. 2018 Jul 5;8(1):10189. doi: 10.1038/s41598-018-27657-x.


Pitx2c orchestrates embryonic axis extension via mesendodermal cell migration.

Collins MM, Maischein HM, Dufourcq P, Charpentier M, Blader P, Stainier DY.

Elife. 2018 Jun 28;7. pii: e34880. doi: 10.7554/eLife.34880.


A new mode of pancreatic islet innervation revealed by live imaging in zebrafish.

Yang YHC, Kawakami K, Stainier DY.

Elife. 2018 Jun 19;7. pii: e34519. doi: 10.7554/eLife.34519.


The Hippo pathway effector Wwtr1 regulates cardiac wall maturation in zebrafish.

Lai JKH, Collins MM, Uribe V, Jiménez-Amilburu V, Günther S, Maischein HM, Stainier DYR.

Development. 2018 May 17;145(10). pii: dev159210. doi: 10.1242/dev.159210.


Distinct myocardial lineages break atrial symmetry during cardiogenesis in zebrafish.

Guerra A, Germano RF, Stone O, Arnaout R, Guenther S, Ahuja S, Uribe V, Vanhollebeke B, Stainier DY, Reischauer S.

Elife. 2018 May 15;7. pii: e32833. doi: 10.7554/eLife.32833.


Corrigendum: Cloche is a bHLH-PAS transcription factor that drives haemato-vascular specification.

Reischauer S, Stone OA, Villasenor A, Chi N, Jin SW, Martin M, Lee MT, Fukuda N, Marass M, Witty A, Fiddes I, Kuo T, Chung WS, Salek S, Lerrigo R, Alsiö J, Luo S, Tworus D, Augustine SM, Mucenieks S, Nystedt B, Giraldez AJ, Schroth GP, Andersson O, Stainier DYR.

Nature. 2018 Mar 21;555(7697):543. doi: 10.1038/nature25991.


Mir-126 is a conserved modulator of lymphatic development.

Kontarakis Z, Rossi A, Ramas S, Dellinger MT, Stainier DYR.

Dev Biol. 2018 May 15;437(2):120-130. doi: 10.1016/j.ydbio.2018.03.006. Epub 2018 Mar 15.


Recent insights into vascular development from studies in zebrafish.

Matsuoka RL, Stainier DYR.

Curr Opin Hematol. 2018 May;25(3):204-211. doi: 10.1097/MOH.0000000000000420.


Hif-1α and Hif-2α regulate hemogenic endothelium and hematopoietic stem cell formation in zebrafish.

Gerri C, Marass M, Rossi A, Stainier DYR.

Blood. 2018 Mar 1;131(9):963-973. doi: 10.1182/blood-2017-07-797795. Epub 2018 Jan 16.


Regulation of posterior body and epidermal morphogenesis in zebrafish by localized Yap1 and Wwtr1.

Kimelman D, Smith NL, Lai JKH, Stainier DY.

Elife. 2017 Dec 28;6. pii: e31065. doi: 10.7554/eLife.31065.


Wnt/β-catenin signaling controls intrahepatic biliary network formation in zebrafish by regulating notch activity.

So J, Khaliq M, Evason K, Ninov N, Martin BL, Stainier DYR, Shin D.

Hepatology. 2018 Jun;67(6):2352-2366. doi: 10.1002/hep.29752. Epub 2018 Apr 19.


Opposite effects of Activin type 2 receptor ligands on cardiomyocyte proliferation during development and repair.

Dogra D, Ahuja S, Kim HT, Rasouli SJ, Stainier DYR, Reischauer S.

Nat Commun. 2017 Dec 1;8(1):1902. doi: 10.1038/s41467-017-01950-1.


Transient cardiomyocyte fusion regulates cardiac development in zebrafish.

Sawamiphak S, Kontarakis Z, Filosa A, Reischauer S, Stainier DYR.

Nat Commun. 2017 Nov 15;8(1):1525. doi: 10.1038/s41467-017-01555-8.


Guidelines for morpholino use in zebrafish.

Stainier DYR, Raz E, Lawson ND, Ekker SC, Burdine RD, Eisen JS, Ingham PW, Schulte-Merker S, Yelon D, Weinstein BM, Mullins MC, Wilson SW, Ramakrishnan L, Amacher SL, Neuhauss SCF, Meng A, Mochizuki N, Panula P, Moens CB.

PLoS Genet. 2017 Oct 19;13(10):e1007000. doi: 10.1371/journal.pgen.1007000. eCollection 2017 Oct. No abstract available.


CNS-resident progenitors direct the vascularization of neighboring tissues.

Matsuoka RL, Rossi A, Stone OA, Stainier DYR.

Proc Natl Acad Sci U S A. 2017 Sep 19;114(38):10137-10142. doi: 10.1073/pnas.1619300114. Epub 2017 Aug 30.


Genetic compensation: A phenomenon in search of mechanisms.

El-Brolosy MA, Stainier DYR.

PLoS Genet. 2017 Jul 13;13(7):e1006780. doi: 10.1371/journal.pgen.1006780. eCollection 2017 Jul. Review.


Thyroid Hormone Coordinates Pancreatic Islet Maturation During the Zebrafish Larval-to-Juvenile Transition to Maintain Glucose Homeostasis.

Matsuda H, Mullapudi ST, Zhang Y, Hesselson D, Stainier DYR.

Diabetes. 2017 Oct;66(10):2623-2635. doi: 10.2337/db16-1476. Epub 2017 Jul 11.


Sheath Cell Invasion and Trans-differentiation Repair Mechanical Damage Caused by Loss of Caveolae in the Zebrafish Notochord.

Garcia J, Bagwell J, Njaine B, Norman J, Levic DS, Wopat S, Miller SE, Liu X, Locasale JW, Stainier DYR, Bagnat M.

Curr Biol. 2017 Jul 10;27(13):1982-1989.e3. doi: 10.1016/j.cub.2017.05.035. Epub 2017 Jun 22.


Reciprocal analyses in zebrafish and medaka reveal that harnessing the immune response promotes cardiac regeneration.

Lai SL, Marín-Juez R, Moura PL, Kuenne C, Lai JKH, Tsedeke AT, Guenther S, Looso M, Stainier DY.

Elife. 2017 Jun 20;6. pii: e25605. doi: 10.7554/eLife.25605.


Bone morphogenetic protein signaling governs biliary-driven liver regeneration in zebrafish through tbx2b and id2a.

Choi TY, Khaliq M, Tsurusaki S, Ninov N, Stainier DYR, Tanaka M, Shin D.

Hepatology. 2017 Nov;66(5):1616-1630. doi: 10.1002/hep.29309. Epub 2017 Sep 29.


The zebrafish ventricle: A hub of cardiac endothelial cells for in vitro cell behavior studies.

Patra C, Kontarakis Z, Kaur H, Rayrikar A, Mukherjee D, Stainier DYR.

Sci Rep. 2017 Jun 2;7(1):2687. doi: 10.1038/s41598-017-02461-1.


Frameshift indels introduced by genome editing can lead to in-frame exon skipping.

Lalonde S, Stone OA, Lessard S, Lavertu A, Desjardins J, Beaudoin M, Rivas M, Stainier DYR, Lettre G.

PLoS One. 2017 Jun 1;12(6):e0178700. doi: 10.1371/journal.pone.0178700. eCollection 2017.


Hif-1α regulates macrophage-endothelial interactions during blood vessel development in zebrafish.

Gerri C, Marín-Juez R, Marass M, Marks A, Maischein HM, Stainier DYR.

Nat Commun. 2017 May 19;8:15492. doi: 10.1038/ncomms15492.


Regulation of cardiomyocyte behavior in zebrafish trabeculation by Neuregulin 2a signaling.

Rasouli SJ, Stainier DYR.

Nat Commun. 2017 May 9;8:15281. doi: 10.1038/ncomms15281.



Gut P, Reischauer S, Stainier DYR, Arnaout R.

Physiol Rev. 2017 Jul 1;97(3):889-938. doi: 10.1152/physrev.00038.2016. Review.


The Max Planck Institute for Heart and Lung Research Curiosity-Driven Basic Research to Fight Cardio-Pulmonary Diseases.

Braun T, Offermanns S, Stainier DYR, Seeger W.

Circ Res. 2017 Apr 28;120(9):1386-1389. doi: 10.1161/CIRCRESAHA.117.310763. No abstract available.


Pushing Yap into the Nucleus with Shear Force.

Lai JK, Stainier DY.

Dev Cell. 2017 Mar 27;40(6):517-518. doi: 10.1016/j.devcel.2017.03.008.


Vegf signaling promotes vascular endothelial differentiation by modulating etv2 expression.

Casie Chetty S, Rost MS, Enriquez JR, Schumacher JA, Baltrunaite K, Rossi A, Stainier DY, Sumanas S.

Dev Biol. 2017 Apr 15;424(2):147-161. doi: 10.1016/j.ydbio.2017.03.005. Epub 2017 Mar 7.


On the development of the hepatopancreatic ductal system.

Villasenor A, Stainier DYR.

Semin Cell Dev Biol. 2017 Jun;66:69-80. doi: 10.1016/j.semcdb.2017.02.003. Epub 2017 Feb 16. Review.


Proteolysis regulates cardiomyocyte maturation and tissue integration.

Fukuda R, Gunawan F, Beisaw A, Jimenez-Amilburu V, Maischein HM, Kostin S, Kawakami K, Stainier DY.

Nat Commun. 2017 Feb 17;8:14495. doi: 10.1038/ncomms14495.


Isl2b regulates anterior second heart field development in zebrafish.

Witzel HR, Cheedipudi S, Gao R, Stainier DY, Dobreva GD.

Sci Rep. 2017 Jan 20;7:41043. doi: 10.1038/srep41043.


TAEL: a zebrafish-optimized optogenetic gene expression system with fine spatial and temporal control.

Reade A, Motta-Mena LB, Gardner KH, Stainier DY, Weiner OD, Woo S.

Development. 2017 Jan 15;144(2):345-355. doi: 10.1242/dev.139238. Epub 2016 Dec 19.


Defective adgra2 (gpr124) splicing and function in zebrafish ouchless mutants.

Bostaille N, Gauquier A, Stainier DY, Raible DW, Vanhollebeke B.

Development. 2017 Jan 1;144(1):8-11. doi: 10.1242/dev.146803. Epub 2016 Dec 15.


In Vivo Visualization of Cardiomyocyte Apicobasal Polarity Reveals Epithelial to Mesenchymal-like Transition during Cardiac Trabeculation.

Jiménez-Amilburu V, Rasouli SJ, Staudt DW, Nakajima H, Chiba A, Mochizuki N, Stainier DYR.

Cell Rep. 2016 Dec 6;17(10):2687-2699. doi: 10.1016/j.celrep.2016.11.023.


Radial glia regulate vascular patterning around the developing spinal cord.

Matsuoka RL, Marass M, Avdesh A, Helker CS, Maischein HM, Grosse AS, Kaur H, Lawson ND, Herzog W, Stainier DY.

Elife. 2016 Nov 17;5. pii: e20253. doi: 10.7554/eLife.20253.


Injury-induced ctgfa directs glial bridging and spinal cord regeneration in zebrafish.

Mokalled MH, Patra C, Dickson AL, Endo T, Stainier DY, Poss KD.

Science. 2016 Nov 4;354(6312):630-634.


Loss-of-function genetic tools for animal models: cross-species and cross-platform differences.

Housden BE, Muhar M, Gemberling M, Gersbach CA, Stainier DY, Seydoux G, Mohr SE, Zuber J, Perrimon N.

Nat Rev Genet. 2017 Jan;18(1):24-40. doi: 10.1038/nrg.2016.118. Epub 2016 Oct 31. Review.


Fast revascularization of the injured area is essential to support zebrafish heart regeneration.

Marín-Juez R, Marass M, Gauvrit S, Rossi A, Lai SL, Materna SC, Black BL, Stainier DY.

Proc Natl Acad Sci U S A. 2016 Oct 4;113(40):11237-11242. Epub 2016 Sep 19.


Regulation of Vegf signaling by natural and synthetic ligands.

Rossi A, Gauvrit S, Marass M, Pan L, Moens CB, Stainier DYR.

Blood. 2016 Nov 10;128(19):2359-2366. doi: 10.1182/blood-2016-04-711192. Epub 2016 Aug 24.


Yap reprograms glutamine metabolism to increase nucleotide biosynthesis and enable liver growth.

Cox AG, Hwang KL, Brown KK, Evason K, Beltz S, Tsomides A, O'Connor K, Galli GG, Yimlamai D, Chhangawala S, Yuan M, Lien EC, Wucherpfennig J, Nissim S, Minami A, Cohen DE, Camargo FD, Asara JM, Houvras Y, Stainier DYR, Goessling W.

Nat Cell Biol. 2016 Aug;18(8):886-896. doi: 10.1038/ncb3389. Epub 2016 Jul 18.


Cloche is a bHLH-PAS transcription factor that drives haemato-vascular specification.

Reischauer S, Stone OA, Villasenor A, Chi N, Jin SW, Martin M, Lee MT, Fukuda N, Marass M, Witty A, Fiddes I, Kuo T, Chung WS, Salek S, Lerrigo R, Alsiö J, Luo S, Tworus D, Augustine SM, Mucenieks S, Nystedt B, Giraldez AJ, Schroth GP, Andersson O, Stainier DY.

Nature. 2016 Jul 14;535(7611):294-8. doi: 10.1038/nature18614. Erratum in: Nature. 2018 Mar 21;555(7697):543.


N-cadherin relocalization during cardiac trabeculation.

Cherian AV, Fukuda R, Augustine SM, Maischein HM, Stainier DY.

Proc Natl Acad Sci U S A. 2016 Jul 5;113(27):7569-74. doi: 10.1073/pnas.1606385113. Epub 2016 Jun 23.


Endoderm specification and liver development.

Goessling W, Stainier DY.

Methods Cell Biol. 2016;134:463-83. doi: 10.1016/bs.mcb.2016.03.042. Epub 2016 May 24.


Real-time 3D visualization of cellular rearrangements during cardiac valve formation.

Pestel J, Ramadass R, Gauvrit S, Helker C, Herzog W, Stainier DY.

Development. 2016 Jun 15;143(12):2217-27. doi: 10.1242/dev.133272.


Cavin4b/Murcb Is Required for Skeletal Muscle Development and Function in Zebrafish.

Housley MP, Njaine B, Ricciardi F, Stone OA, Hölper S, Krüger M, Kostin S, Stainier DY.

PLoS Genet. 2016 Jun 13;12(6):e1006099. doi: 10.1371/journal.pgen.1006099. eCollection 2016 Jun.


In vivo modulation of endothelial polarization by Apelin receptor signalling.

Kwon HB, Wang S, Helker CS, Rasouli SJ, Maischein HM, Offermanns S, Herzog W, Stainier DY.

Nat Commun. 2016 Jun 1;7:11805. doi: 10.1038/ncomms11805.


A mutation in the atrial-specific myosin light chain gene (MYL4) causes familial atrial fibrillation.

Orr N, Arnaout R, Gula LJ, Spears DA, Leong-Sit P, Li Q, Tarhuni W, Reischauer S, Chauhan VS, Borkovich M, Uppal S, Adler A, Coughlin SR, Stainier DY, Gollob MH.

Nat Commun. 2016 Apr 12;7:11303. doi: 10.1038/ncomms11303.

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