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Items: 1 to 50 of 365

1.

Barcoded solid-phase RNA capture for Spatial Transcriptomics profiling in mammalian tissue sections.

Salmén F, Ståhl PL, Mollbrink A, Navarro JF, Vickovic S, Frisén J, Lundeberg J.

Nat Protoc. 2018 Nov;13(11):2501-2534. doi: 10.1038/s41596-018-0045-2.

PMID:
30353172
2.

Beyond Curvature: Prevalence and Characteristics of Penile Volume-Loss Deformities in Men With Peyronie's Disease.

Margolin EJ, Pagano MJ, Aisen CM, Onyeji IC, Stahl PJ.

Sex Med. 2018 Oct 17. pii: S2050-1161(18)30076-X. doi: 10.1016/j.esxm.2018.07.003. [Epub ahead of print]

3.

ECAP growth function to increasing pulse amplitude or pulse duration demonstrates large inter-animal variability that is reflected in auditory cortex of the guinea pig.

Adenis V, Gourévitch B, Mamelle E, Recugnat M, Stahl P, Gnansia D, Nguyen Y, Edeline JM.

PLoS One. 2018 Aug 2;13(8):e0201771. doi: 10.1371/journal.pone.0201771. eCollection 2018.

4.

A contemporary analysis of dual inflatable penile prosthesis and artificial urinary sphincters outcomes.

Patel N, Golan R, Halpern JA, Sun T, Asafu-Adjei AD, Chughtai B, Stahl P, Sedrakyan A, Kashanian JA.

J Urol. 2018 Jul 27. pii: S0022-5347(18)43596-3. doi: 10.1016/j.juro.2018.07.046. [Epub ahead of print]

PMID:
30059687
5.

Spatial maps of prostate cancer transcriptomes reveal an unexplored landscape of heterogeneity.

Berglund E, Maaskola J, Schultz N, Friedrich S, Marklund M, Bergenstråhle J, Tarish F, Tanoglidi A, Vickovic S, Larsson L, Salmén F, Ogris C, Wallenborg K, Lagergren J, Ståhl P, Sonnhammer E, Helleday T, Lundeberg J.

Nat Commun. 2018 Jun 20;9(1):2419. doi: 10.1038/s41467-018-04724-5.

6.

Exosomes and extracellular vesicles: the path forward.

Stahl PD, Raposo G.

Essays Biochem. 2018 May 15;62(2):119-124. doi: 10.1042/EBC20170088. Print 2018 May 15. Review.

PMID:
29765006
7.

Case report of the patient source of the Babesia microti R1 reference strain and implications for travelers.

Stahl P, Poinsignon Y, Pouedras P, Ciubotaru V, Berry L, Emu B, Krause PJ, Ben Mamoun C, Cornillot E.

J Travel Med. 2018 Jan 1;25(1). doi: 10.1093/jtm/tax073.

PMID:
29394381
8.

ST Spot Detector: a web-based application for automatic spot and tissue detection for spatial Transcriptomics image datasets.

Wong K, Navarro JF, Bergenstråhle L, Ståhl PL, Lundeberg J.

Bioinformatics. 2018 Jun 1;34(11):1966-1968. doi: 10.1093/bioinformatics/bty030.

PMID:
29360929
9.

Fast accrual of C and N in soil organic matter fractions following post-mining reclamation across the USA.

Angst G, Mueller CW, Angst Š, Pivokonský M, Franklin J, Stahl PD, Frouz J.

J Environ Manage. 2018 Mar 1;209:216-226. doi: 10.1016/j.jenvman.2017.12.050. Epub 2018 Jan 4.

PMID:
29294447
10.

Trends in Penile Prosthetics: Influence of Patient Demographics, Surgeon Volume, and Hospital Volume on Type of Penile Prosthesis Inserted in New York State.

Kashanian JA, Golan R, Sun T, Patel NA, Lipsky MJ, Stahl PJ, Sedrakyan A.

J Sex Med. 2018 Feb;15(2):245-250. doi: 10.1016/j.jsxm.2017.12.005. Epub 2017 Dec 29.

PMID:
29292061
11.

Penile Length: Measurement Technique and Applications.

Davoudzadeh EP, Davoudzadeh NP, Margolin E, Stahl PJ, Stember DS.

Sex Med Rev. 2018 Apr;6(2):261-271. doi: 10.1016/j.sxmr.2017.10.002. Epub 2017 Dec 28.

PMID:
29289534
12.

Spatial detection of fetal marker genes expressed at low level in adult human heart tissue.

Asp M, Salmén F, Ståhl PL, Vickovic S, Felldin U, Löfling M, Fernandez Navarro J, Maaskola J, Eriksson MJ, Persson B, Corbascio M, Persson H, Linde C, Lundeberg J.

Sci Rep. 2017 Oct 11;7(1):12941. doi: 10.1038/s41598-017-13462-5.

13.

Testicular sperm retrieval for intracytoplasmic sperm injection in non-azoospermic men: when should we pull the trigger?

Stahl PJ.

Fertil Steril. 2017 Sep;108(3):442-443. doi: 10.1016/j.fertnstert.2017.07.004. No abstract available.

PMID:
28865540
14.

A New Method to Test the Efficiency of Cochlear Implant Artifacts Removal From Auditory Evoked Potentials.

Attina V, Mina F, Stahl P, Duroc Y, Veuillet E, Truy E, Thai-Van H.

IEEE Trans Neural Syst Rehabil Eng. 2017 Dec;25(12):2453-2460. doi: 10.1109/TNSRE.2017.2723952. Epub 2017 Jul 6.

PMID:
28692981
15.

Spatially resolved transcriptome profiling in model plant species.

Giacomello S, Salmén F, Terebieniec BK, Vickovic S, Navarro JF, Alexeyenko A, Reimegård J, McKee LS, Mannapperuma C, Bulone V, Ståhl PL, Sundström JF, Street NR, Lundeberg J.

Nat Plants. 2017 May 8;3:17061. doi: 10.1038/nplants.2017.61.

PMID:
28481330
16.

Three-Dimensional Photography for Quantitative Assessment of Penile Volume-Loss Deformities in Peyronie's Disease.

Margolin EJ, Mlynarczyk CM, Mulhall JP, Stember DS, Stahl PJ.

J Sex Med. 2017 Jun;14(6):829-833. doi: 10.1016/j.jsxm.2017.03.257. Epub 2017 Apr 28.

PMID:
28460995
17.

ST Pipeline: an automated pipeline for spatial mapping of unique transcripts.

Navarro JF, Sjöstrand J, Salmén F, Lundeberg J, Ståhl PL.

Bioinformatics. 2017 Aug 15;33(16):2591-2593. doi: 10.1093/bioinformatics/btx211.

PMID:
28398467
18.

Corrigendum: An automated approach to prepare tissue-derived spatially barcoded RNA-sequencing libraries.

Jemt A, Salmén F, Lundmark A, Mollbrink A, Navarro JF, Ståhl PL, Yucel-Lindberg T, Lundeberg J.

Sci Rep. 2017 Mar 13;7:41109. doi: 10.1038/srep41109. No abstract available.

19.

Multicenter Investigation of the Micro-Organisms Involved in Penile Prosthesis Infection: An Analysis of the Efficacy of the AUA and EAU Guidelines for Penile Prosthesis Prophylaxis.

Gross MS, Phillips EA, Carrasquillo RJ, Thornton A, Greenfield JM, Levine LA, Alukal JP, Conners WP 3rd, Glina S, Tanrikut C, Honig SC, Becher EF, Bennett NE, Wang R, Perito PE, Stahl PJ, Rosselló Gayá M, Rosselló Barbará M, Cedeno JD, Gheiler EL, Kalejaiye O, Ralph DJ, Köhler TS, Stember DS, Carrion RE, Maria PP, Brant WO, Bickell MW, Garber BB, Pineda M, Burnett AL 2nd, Eid JF, Henry GD, Munarriz RM.

J Sex Med. 2017 Mar;14(3):455-463. doi: 10.1016/j.jsxm.2017.01.007. Epub 2017 Feb 8.

PMID:
28189561
20.

Recovery of spermatogenesis after hormone therapy: what to expect and when to expect it.

Stahl PJ.

Fertil Steril. 2017 Feb;107(2):338-339. doi: 10.1016/j.fertnstert.2016.11.033. No abstract available.

PMID:
28160921
21.

MALDI imaging mass spectrometry reveals multiple clinically relevant masses in colorectal cancer using large-scale tissue microarrays.

Hinsch A, Buchholz M, Odinga S, Borkowski C, Koop C, Izbicki JR, Wurlitzer M, Krech T, Wilczak W, Steurer S, Jacobsen F, Burandt EC, Stahl P, Simon R, Sauter G, Schlüter H.

J Mass Spectrom. 2017 Mar;52(3):165-173. doi: 10.1002/jms.3916.

PMID:
28117928
22.

THSD7A expression in human cancer.

Stahl PR, Hoxha E, Wiech T, Schröder C, Simon R, Stahl RA.

Genes Chromosomes Cancer. 2017 Apr;56(4):314-327. doi: 10.1002/gcc.22440. Epub 2017 Feb 6.

PMID:
28035718
23.

An automated approach to prepare tissue-derived spatially barcoded RNA-sequencing libraries.

Jemt A, Salmén F, Lundmark A, Mollbrink A, Fernández Navarro J, Ståhl PL, Yucel-Lindberg T, Lundeberg J.

Sci Rep. 2016 Nov 16;6:37137. doi: 10.1038/srep37137. Erratum in: Sci Rep. 2017 Mar 13;7:41109.

24.

Osteoporosis and Low Bone Mineral Density in Men with Testosterone Deficiency Syndrome.

Gaffney CD, Pagano MJ, Kuker AP, Stember DS, Stahl PJ.

Sex Med Rev. 2015 Oct;3(4):298-315. doi: 10.1002/smrj.63. Epub 2015 Nov 10.

PMID:
27784602
25.

Massive and parallel expression profiling using microarrayed single-cell sequencing.

Vickovic S, Ståhl PL, Salmén F, Giatrellis S, Westholm JO, Mollbrink A, Navarro JF, Custodio J, Bienko M, Sutton LA, Rosenquist R, Frisén J, Lundeberg J.

Nat Commun. 2016 Oct 14;7:13182. doi: 10.1038/ncomms13182.

26.

Impact of Surgeon Case Volume on Reoperation Rates after Inflatable Penile Prosthesis Surgery.

Onyeji IC, Sui W, Pagano MJ, Weinberg AC, James MB, Theofanides MC, Stember DS, Anderson CB, Stahl PJ.

J Urol. 2017 Jan;197(1):223-229. doi: 10.1016/j.juro.2016.08.083. Epub 2016 Aug 18.

PMID:
27545573
27.

Risk Factors for Priapism Readmission.

Sui W, Onyeji IC, James MB, Stahl PJ, RoyChoudhury A, Anderson CB.

J Sex Med. 2016 Oct;13(10):1555-61. doi: 10.1016/j.jsxm.2016.07.009. Epub 2016 Aug 3.

PMID:
27496074
28.

An Indirect Immunofluorescence Method Facilitates Detection of Thrombospondin Type 1 Domain-Containing 7A-Specific Antibodies in Membranous Nephropathy.

Hoxha E, Beck LH Jr, Wiech T, Tomas NM, Probst C, Mindorf S, Meyer-Schwesinger C, Zahner G, Stahl PR, Schöpper R, Panzer U, Harendza S, Helmchen U, Salant DJ, Stahl RA.

J Am Soc Nephrol. 2017 Feb;28(2):520-531. doi: 10.1681/ASN.2016010050. Epub 2016 Jul 19.

29.

Visualization and analysis of gene expression in tissue sections by spatial transcriptomics.

Ståhl PL, Salmén F, Vickovic S, Lundmark A, Navarro JF, Magnusson J, Giacomello S, Asp M, Westholm JO, Huss M, Mollbrink A, Linnarsson S, Codeluppi S, Borg Å, Pontén F, Costea PI, Sahlén P, Mulder J, Bergmann O, Lundeberg J, Frisén J.

Science. 2016 Jul 1;353(6294):78-82. doi: 10.1126/science.aaf2403.

30.

A Mechanism for Cancer-Associated Membranous Nephropathy.

Hoxha E, Wiech T, Stahl PR, Zahner G, Tomas NM, Meyer-Schwesinger C, Wenzel U, Janneck M, Steinmetz OM, Panzer U, Harendza S, Stahl RA.

N Engl J Med. 2016 May 19;374(20):1995-6. doi: 10.1056/NEJMc1511702. No abstract available.

31.

Rate discrimination at low pulse rates in normal-hearing and cochlear implant listeners: Influence of intracochlear stimulation site.

Stahl P, Macherey O, Meunier S, Roman S.

J Acoust Soc Am. 2016 Apr;139(4):1578. doi: 10.1121/1.4944564.

PMID:
27106306
32.

Supporting anticipation in driving through attentional and interpretational in-vehicle displays.

Stahl P, Donmez B, Jamieson GA.

Accid Anal Prev. 2016 Jun;91:103-13. doi: 10.1016/j.aap.2016.02.030. Epub 2016 Mar 11.

PMID:
26974027
33.

Age, Body Mass Index, and Frequency of Sexual Activity are Independent Predictors of Testosterone Deficiency in Men With Erectile Dysfunction.

Pagano MJ, De Fazio A, Levy A, RoyChoudhury A, Stahl PJ.

Urology. 2016 Apr;90:112-8. doi: 10.1016/j.urology.2015.12.030. Epub 2015 Dec 29.

PMID:
26743389
34.

Loss of H2Bub1 Expression is Linked to Poor Prognosis in Nodal Negative Colorectal Cancers.

Melling N, Grimm N, Simon R, Stahl P, Bokemeyer C, Terracciano L, Sauter G, Izbicki JR, Marx AH.

Pathol Oncol Res. 2016 Jan;22(1):95-102. doi: 10.1007/s12253-015-9977-9. Epub 2015 Sep 7.

PMID:
26347467
35.

Variation in Penile Hemodynamics by Anatomic Location of Cavernosal Artery Imaging in Penile Duplex Doppler Ultrasound.

Pagano MJ, Stahl PJ.

J Sex Med. 2015 Sep;12(9):1911-9. doi: 10.1111/jsm.12958. Epub 2015 Jul 14.

PMID:
26177146
36.

Determination of Tumor Heterogeneity in Colorectal Cancers Using Heterogeneity Tissue Microarrays.

Stahl PR, Schnellert J, Koop C, Simon R, Marx A, Izbicki JR, Sauter G, Quaas A.

Pathol Oncol Res. 2015 Sep;21(4):1183-9. doi: 10.1007/s12253-015-9953-4. Epub 2015 May 31.

PMID:
26026893
37.

Extracellular vesicles shuffling intercellular messages: for good or for bad.

Lo Cicero A, Stahl PD, Raposo G.

Curr Opin Cell Biol. 2015 Aug;35:69-77. doi: 10.1016/j.ceb.2015.04.013. Epub 2015 May 19. Review.

PMID:
26001269
38.

Concordance among sperm deoxyribonucleic acid integrity assays and semen parameters.

Stahl PJ, Cogan C, Mehta A, Bolyakov A, Paduch DA, Goldstein M.

Fertil Steril. 2015 Jul;104(1):56-61.e1. doi: 10.1016/j.fertnstert.2015.04.023. Epub 2015 May 16.

PMID:
25989978
39.

Loss of RNA-binding motif protein 3 expression is associated with right-sided localization and poor prognosis in colorectal cancer.

Melling N, Simon R, Mirlacher M, Izbicki JR, Stahl P, Terracciano LM, Bokemeyer C, Sauter G, Marx AH.

Histopathology. 2016 Jan;68(2):191-8. doi: 10.1111/his.12726. Epub 2015 Jul 22.

PMID:
25922889
40.

Heterogeneity of amplification of HER2, EGFR, CCND1 and MYC in gastric cancer.

Stahl P, Seeschaaf C, Lebok P, Kutup A, Bockhorn M, Izbicki JR, Bokemeyer C, Simon R, Sauter G, Marx AH.

BMC Gastroenterol. 2015 Feb 5;15:7. doi: 10.1186/s12876-015-0231-4.

41.

Collagen-gelatin mixtures as wound model, and substrates for VEGF-mimetic peptide binding and endothelial cell activation.

Chan TR, Stahl PJ, Li Y, Yu SM.

Acta Biomater. 2015 Mar;15:164-72. doi: 10.1016/j.actbio.2015.01.005. Epub 2015 Jan 10.

42.

Capillary Network-Like Organization of Endothelial Cells in PEGDA Scaffolds Encoded with Angiogenic Signals via Triple Helical Hybridization.

Stahl PJ, Chan TR, Shen YI, Sun G, Gerecht S, Yu SM.

Adv Funct Mater. 2014 Jun 4;24(21):3213-3225. No abstract available.

43.

EVpedia: a community web portal for extracellular vesicles research.

Kim DK, Lee J, Kim SR, Choi DS, Yoon YJ, Kim JH, Go G, Nhung D, Hong K, Jang SC, Kim SH, Park KS, Kim OY, Park HT, Seo JH, Aikawa E, Baj-Krzyworzeka M, van Balkom BW, Belting M, Blanc L, Bond V, Bongiovanni A, Borràs FE, Buée L, Buzás EI, Cheng L, Clayton A, Cocucci E, Dela Cruz CS, Desiderio DM, Di Vizio D, Ekström K, Falcon-Perez JM, Gardiner C, Giebel B, Greening DW, Gross JC, Gupta D, Hendrix A, Hill AF, Hill MM, Nolte-'t Hoen E, Hwang DW, Inal J, Jagannadham MV, Jayachandran M, Jee YK, Jørgensen M, Kim KP, Kim YK, Kislinger T, Lässer C, Lee DS, Lee H, van Leeuwen J, Lener T, Liu ML, Lötvall J, Marcilla A, Mathivanan S, Möller A, Morhayim J, Mullier F, Nazarenko I, Nieuwland R, Nunes DN, Pang K, Park J, Patel T, Pocsfalvi G, Del Portillo H, Putz U, Ramirez MI, Rodrigues ML, Roh TY, Royo F, Sahoo S, Schiffelers R, Sharma S, Siljander P, Simpson RJ, Soekmadji C, Stahl P, Stensballe A, Stępień E, Tahara H, Trummer A, Valadi H, Vella LJ, Wai SN, Witwer K, Yáñez-Mó M, Youn H, Zeidler R, Gho YS.

Bioinformatics. 2015 Mar 15;31(6):933-9. doi: 10.1093/bioinformatics/btu741. Epub 2014 Nov 10.

44.

Trypanosoma cruzi evades the protective role of interferon-gamma-signaling in parasite-infected cells.

Stahl P, Ruppert V, Schwarz RT, Meyer T.

PLoS One. 2014 Oct 23;9(10):e110512. doi: 10.1371/journal.pone.0110512. eCollection 2014.

45.

Regulation of AMPK activation by CD36 links fatty acid uptake to β-oxidation.

Samovski D, Sun J, Pietka T, Gross RW, Eckel RH, Su X, Stahl PD, Abumrad NA.

Diabetes. 2015 Feb;64(2):353-9. doi: 10.2337/db14-0582. Epub 2014 Aug 25.

46.

MALDI imaging-based identification of prognostically relevant signals in bladder cancer using large-scale tissue microarrays.

Steurer S, Singer JM, Rink M, Chun F, Dahlem R, Simon R, Burandt E, Stahl P, Terracciano L, Schlomm T, Wagner W, Höppner W, Omidi M, Kraus O, Kwiatkowski M, Doh O, Fisch M, Soave A, Sauter G, Wurlitzer M, Schlüter H, Minner S.

Urol Oncol. 2014 Nov;32(8):1225-33. doi: 10.1016/j.urolonc.2014.06.007. Epub 2014 Aug 15.

PMID:
25131659
47.

Soil microbial substrate properties and microbial community responses under irrigated organic and reduced-tillage crop and forage production systems.

Ghimire R, Norton JB, Stahl PD, Norton U.

PLoS One. 2014 Aug 4;9(8):e103901. doi: 10.1371/journal.pone.0103901. eCollection 2014.

48.

[On-scene times for helicopter services. Influence of central dispatch center strategy].

Gries A, Lenz W, Stahl P, Spiess R, Luiz T; BoLuS-Studiengruppe.

Anaesthesist. 2014 Jul;63(7):555-62. doi: 10.1007/s00101-014-2340-9. Epub 2014 Jun 26. German.

PMID:
24962365
49.

Sperm retrieval and quality evaluation.

Stahl PJ, Schlegel PN, Goldstein M.

Methods Mol Biol. 2014;1154:361-84. doi: 10.1007/978-1-4939-0659-8_17.

PMID:
24782019
50.

MALDI imaging on tissue microarrays identifies molecular features associated with renal cell cancer phenotype.

Steurer S, Seddiqi AS, Singer JM, Bahar AS, Eichelberg C, Rink M, Dahlem R, Huland H, Sauter G, Simon R, Minner S, Burandt E, Stahl PR, Schlomm T, Wurlitzer M, Schlüter H.

Anticancer Res. 2014 May;34(5):2255-61.

PMID:
24778028

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