Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 41

1.

Spatially clustered loci with multiple enhancers are frequent targets of HIV-1 integration.

Lucic B, Chen HC, Kuzman M, Zorita E, Wegner J, Minneker V, Wang W, Fronza R, Laufs S, Schmidt M, Stadhouders R, Roukos V, Vlahovicek K, Filion GJ, Lusic M.

Nat Commun. 2019 Sep 6;10(1):4059. doi: 10.1038/s41467-019-12046-3.

2.

Tregs in fibrosis: To know your enemy, you must become your enemy.

Bal SM, Stadhouders R.

Sci Immunol. 2019 Sep 6;4(39). pii: eaay1160. doi: 10.1126/sciimmunol.aay1160. Review.

PMID:
31492710
3.

The presence of CLL-associated stereotypic B cell receptors in the normal BCR repertoire from healthy individuals increases with age.

Muggen AF, de Jong M, Wolvers-Tettero ILM, Kallemeijn MJ, Teodósio C, Darzentas N, Stadhouders R, IJspeert H, van der Burg M, van IJcken WF, Verhaar JAN, Abdulahad WH, Brouwer E, Boots AMH, Hendriks RW, van Dongen JJM, Langerak AW.

Immun Ageing. 2019 Aug 28;16:22. doi: 10.1186/s12979-019-0163-x. eCollection 2019.

4.

Correction: KLRG1 and NKp46 discriminate subpopulations of human CD117+CRTH2- ILCs biased toward ILC2 or ILC3.

Nagasawa M, Heesters BA, Kradolfer CMA, Krabbendam L, Martinez-Gonzalez I, de Bruijn MJW, Golebski K, Hendriks RW, Stadhouders R, Spits H, Bal SM.

J Exp Med. 2019 Sep 2;216(9):2221-2222. doi: 10.1084/jem.2019049007302019c. Epub 2019 Aug 6. No abstract available.

5.

KLRG1 and NKp46 discriminate subpopulations of human CD117+CRTH2- ILCs biased toward ILC2 or ILC3.

Nagasawa M, Heesters BA, Kradolfer CMA, Krabbendam L, Martinez-Gonzalez I, de Bruijn MJW, Golebski K, Hendriks RW, Stadhouders R, Spits H, Bal SM.

J Exp Med. 2019 Aug 5;216(8):1762-1776. doi: 10.1084/jem.20190490. Epub 2019 Jun 14. Erratum in: J Exp Med. 2019 Aug 6;:.

6.

Transcription factors and 3D genome conformation in cell-fate decisions.

Stadhouders R, Filion GJ, Graf T.

Nature. 2019 May;569(7756):345-354. doi: 10.1038/s41586-019-1182-7. Epub 2019 May 15. Review.

PMID:
31092938
7.

The mouse KLF1 Nan variant impairs nuclear condensation and erythroid maturation.

Cantú I, van de Werken HJG, Gillemans N, Stadhouders R, Heshusius S, Maas A, Esteghamat F, Ozgur Z, van IJcken WFJ, Grosveld F, von Lindern M, Philipsen S, van Dijk TB.

PLoS One. 2019 Mar 28;14(3):e0208659. doi: 10.1371/journal.pone.0208659. eCollection 2019.

8.

Group 2 Innate Lymphoid Cells in Human Respiratory Disorders.

van der Ploeg EK, Carreras Mascaro A, Huylebroeck D, Hendriks RW, Stadhouders R.

J Innate Immun. 2019 Feb 6:1-16. doi: 10.1159/000496212. [Epub ahead of print] Review.

9.

Transcription Factors Drive Tet2-Mediated Enhancer Demethylation to Reprogram Cell Fate.

Sardina JL, Collombet S, Tian TV, Gómez A, Di Stefano B, Berenguer C, Brumbaugh J, Stadhouders R, Segura-Morales C, Gut M, Gut IG, Heath S, Aranda S, Di Croce L, Hochedlinger K, Thieffry D, Graf T.

Cell Stem Cell. 2018 Dec 6;23(6):905-906. doi: 10.1016/j.stem.2018.11.001. No abstract available.

10.

Identification of Distinct Unmutated Chronic Lymphocytic Leukemia Subsets in Mice Based on Their T Cell Dependency.

Pal Singh S, de Bruijn MJW, de Almeida MP, Meijers RWJ, Nitschke L, Langerak AW, Pillai SY, Stadhouders R, Hendriks RW.

Front Immunol. 2018 Sep 13;9:1996. doi: 10.3389/fimmu.2018.01996. eCollection 2018.

11.

Transcription Factors Drive Tet2-Mediated Enhancer Demethylation to Reprogram Cell Fate.

Sardina JL, Collombet S, Tian TV, Gómez A, Di Stefano B, Berenguer C, Brumbaugh J, Stadhouders R, Segura-Morales C, Gut M, Gut IG, Heath S, Aranda S, Di Croce L, Hochedlinger K, Thieffry D, Graf T.

Cell Stem Cell. 2018 Nov 1;23(5):727-741.e9. doi: 10.1016/j.stem.2018.08.016. Epub 2018 Sep 13. Erratum in: Cell Stem Cell. 2018 Dec 6;23(6):905-906.

PMID:
30220521
12.

Effect of Dietary Fiber and Metabolites on Mast Cell Activation and Mast Cell-Associated Diseases.

Folkerts J, Stadhouders R, Redegeld FA, Tam SY, Hendriks RW, Galli SJ, Maurer M.

Front Immunol. 2018 May 29;9:1067. doi: 10.3389/fimmu.2018.01067. eCollection 2018. Review.

13.

Expanding the toolbox for 3D genomics.

Stadhouders R.

Nat Genet. 2018 May;50(5):634-635. doi: 10.1038/s41588-018-0112-1. No abstract available.

PMID:
29700469
14.

Epigenome analysis links gene regulatory elements in group 2 innate lymphocytes to asthma susceptibility.

Stadhouders R, Li BWS, de Bruijn MJW, Gomez A, Rao TN, Fehling HJ, van IJcken WFJ, Lim AI, Di Santo JP, Graf T, Hendriks RW.

J Allergy Clin Immunol. 2018 Dec;142(6):1793-1807. doi: 10.1016/j.jaci.2017.12.1006. Epub 2018 Mar 2.

PMID:
29486229
15.

OneD: increasing reproducibility of Hi-C samples with abnormal karyotypes.

Vidal E, le Dily F, Quilez J, Stadhouders R, Cuartero Y, Graf T, Marti-Renom MA, Beato M, Filion GJ.

Nucleic Acids Res. 2018 May 4;46(8):e49. doi: 10.1093/nar/gky064.

16.

Transcription factors orchestrate dynamic interplay between genome topology and gene regulation during cell reprogramming.

Stadhouders R, Vidal E, Serra F, Di Stefano B, Le Dily F, Quilez J, Gomez A, Collombet S, Berenguer C, Cuartero Y, Hecht J, Filion GJ, Beato M, Marti-Renom MA, Graf T.

Nat Genet. 2018 Feb;50(2):238-249. doi: 10.1038/s41588-017-0030-7. Epub 2018 Jan 15.

17.

A cellular and molecular view of T helper 17 cell plasticity in autoimmunity.

Stadhouders R, Lubberts E, Hendriks RW.

J Autoimmun. 2018 Feb;87:1-15. doi: 10.1016/j.jaut.2017.12.007. Epub 2017 Dec 22. Review.

18.

Group 2 Innate Lymphoid Cells Exhibit a Dynamic Phenotype in Allergic Airway Inflammation.

Li BWS, Stadhouders R, de Bruijn MJW, Lukkes M, Beerens DMJM, Brem MD, KleinJan A, Bergen I, Vroman H, Kool M, van IJcken WFJ, Rao TN, Fehling HJ, Hendriks RW.

Front Immunol. 2017 Dec 1;8:1684. doi: 10.3389/fimmu.2017.01684. eCollection 2017.

19.

Cell lines generated from a chronic lymphocytic leukemia mouse model exhibit constitutive Btk and Akt signaling.

Singh SP, Pillai SY, de Bruijn MJW, Stadhouders R, Corneth OBJ, van den Ham HJ, Muggen A, van IJcken W, Slinger E, Kuil A, Spaargaren M, Kater AP, Langerak AW, Hendriks RW.

Oncotarget. 2017 May 26;8(42):71981-71995. doi: 10.18632/oncotarget.18234. eCollection 2017 Sep 22.

20.

Parallel sequencing lives, or what makes large sequencing projects successful.

Quilez J, Vidal E, Dily FL, Serra F, Cuartero Y, Stadhouders R, Graf T, Marti-Renom MA, Beato M, Filion G.

Gigascience. 2017 Nov 1;6(11):1-6. doi: 10.1093/gigascience/gix100.

21.

Systemic Human ILC Precursors Provide a Substrate for Tissue ILC Differentiation.

Lim AI, Li Y, Lopez-Lastra S, Stadhouders R, Paul F, Casrouge A, Serafini N, Puel A, Bustamante J, Surace L, Masse-Ranson G, David E, Strick-Marchand H, Le Bourhis L, Cocchi R, Topazio D, Graziano P, Muscarella LA, Rogge L, Norel X, Sallenave JM, Allez M, Graf T, Hendriks RW, Casanova JL, Amit I, Yssel H, Di Santo JP.

Cell. 2017 Mar 9;168(6):1086-1100.e10. doi: 10.1016/j.cell.2017.02.021.

22.

Unbiased Interrogation of 3D Genome Topology Using Chromosome Conformation Capture Coupled to High-Throughput Sequencing (4C-Seq).

Brouwer RW, van den Hout MC, van IJcken WF, Soler E, Stadhouders R.

Methods Mol Biol. 2017;1507:199-220.

PMID:
27832542
23.

C/EBPα creates elite cells for iPSC reprogramming by upregulating Klf4 and increasing the levels of Lsd1 and Brd4.

Di Stefano B, Collombet S, Jakobsen JS, Wierer M, Sardina JL, Lackner A, Stadhouders R, Segura-Morales C, Francesconi M, Limone F, Mann M, Porse B, Thieffry D, Graf T.

Nat Cell Biol. 2016 Apr;18(4):371-81. doi: 10.1038/ncb3326. Epub 2016 Mar 14.

PMID:
26974661
24.

Control of developmentally primed erythroid genes by combinatorial co-repressor actions.

Stadhouders R, Cico A, Stephen T, Thongjuea S, Kolovos P, Baymaz HI, Yu X, Demmers J, Bezstarosti K, Maas A, Barroca V, Kockx C, Ozgur Z, van Ijcken W, Arcangeli ML, Andrieu-Soler C, Lenhard B, Grosveld F, Soler E.

Nat Commun. 2015 Nov 23;6:8893. doi: 10.1038/ncomms9893.

25.

Dynamic Control of Long-Range Genomic Interactions at the Immunoglobulin κ Light-Chain Locus.

Ribeiro de Almeida C, Hendriks RW, Stadhouders R.

Adv Immunol. 2015;128:183-271. doi: 10.1016/bs.ai.2015.07.004. Epub 2015 Aug 14. Review.

PMID:
26477368
26.

Long-range gene regulation and novel therapeutic applications.

van den Heuvel A, Stadhouders R, Andrieu-Soler C, Grosveld F, Soler E.

Blood. 2015 Mar 5;125(10):1521-5. doi: 10.1182/blood-2014-11-567925. Epub 2015 Jan 23. Review.

27.

NLS-tagging: an alternative strategy to tag nuclear proteins.

Giraud G, Stadhouders R, Conidi A, Dekkers DH, Huylebroeck D, Demmers JA, Soler E, Grosveld FG.

Nucleic Acids Res. 2014 Dec 1;42(21). doi: 10.1093/nar/gku869. Epub 2014 Sep 26.

28.

HBS1L-MYB intergenic variants modulate fetal hemoglobin via long-range MYB enhancers.

Stadhouders R, Aktuna S, Thongjuea S, Aghajanirefah A, Pourfarzad F, van Ijcken W, Lenhard B, Rooks H, Best S, Menzel S, Grosveld F, Thein SL, Soler E.

J Clin Invest. 2014 Apr;124(4):1699-710. doi: 10.1172/JCI71520. Epub 2014 Mar 10.

29.

Pre-B cell receptor signaling induces immunoglobulin κ locus accessibility by functional redistribution of enhancer-mediated chromatin interactions.

Stadhouders R, de Bruijn MJ, Rother MB, Yuvaraj S, Ribeiro de Almeida C, Kolovos P, Van Zelm MC, van Ijcken W, Grosveld F, Soler E, Hendriks RW.

PLoS Biol. 2014 Feb 18;12(2):e1001791. doi: 10.1371/journal.pbio.1001791. eCollection 2014 Feb.

30.

Locus-specific proteomics by TChP: targeted chromatin purification.

Pourfarzad F, Aghajanirefah A, de Boer E, Ten Have S, Bryn van Dijk T, Kheradmandkia S, Stadhouders R, Thongjuea S, Soler E, Gillemans N, von Lindern M, Demmers J, Philipsen S, Grosveld F.

Cell Rep. 2013 Aug 15;4(3):589-600. doi: 10.1016/j.celrep.2013.07.004. Epub 2013 Aug 1.

31.

r3Cseq: an R/Bioconductor package for the discovery of long-range genomic interactions from chromosome conformation capture and next-generation sequencing data.

Thongjuea S, Stadhouders R, Grosveld FG, Soler E, Lenhard B.

Nucleic Acids Res. 2013 Jul;41(13):e132. doi: 10.1093/nar/gkt373. Epub 2013 May 13.

32.

Molecular assays for quantitative and qualitative detection of influenza virus and oseltamivir resistance mutations.

van der Vries E, Anber J, van der Linden A, Wu Y, Maaskant J, Stadhouders R, van Beek R, Rimmelzwaan G, Osterhaus A, Boucher C, Schutten M.

J Mol Diagn. 2013 May;15(3):347-54. doi: 10.1016/j.jmoldx.2012.11.007. Epub 2013 Apr 16.

PMID:
23597879
33.

Multiplexed chromosome conformation capture sequencing for rapid genome-scale high-resolution detection of long-range chromatin interactions.

Stadhouders R, Kolovos P, Brouwer R, Zuin J, van den Heuvel A, Kockx C, Palstra RJ, Wendt KS, Grosveld F, van Ijcken W, Soler E.

Nat Protoc. 2013 Mar;8(3):509-24. doi: 10.1038/nprot.2013.018. Epub 2013 Feb 14.

PMID:
23411633
34.

Transcription regulation by distal enhancers: who's in the loop?

Stadhouders R, van den Heuvel A, Kolovos P, Jorna R, Leslie K, Grosveld F, Soler E.

Transcription. 2012 Jul-Aug;3(4):181-6. doi: 10.4161/trns.20720. Epub 2012 Jul 1. Review.

35.

DNA-binding factor CTCF and long-range gene interactions in V(D)J recombination and oncogene activation.

Ribeiro de Almeida C, Stadhouders R, Thongjuea S, Soler E, Hendriks RW.

Blood. 2012 Jun 28;119(26):6209-18. doi: 10.1182/blood-2012-03-402586. Epub 2012 Apr 26. Review.

36.
37.

Dynamic long-range chromatin interactions control Myb proto-oncogene transcription during erythroid development.

Stadhouders R, Thongjuea S, Andrieu-Soler C, Palstra RJ, Bryne JC, van den Heuvel A, Stevens M, de Boer E, Kockx C, van der Sloot A, van den Hout M, van Ijcken W, Eick D, Lenhard B, Grosveld F, Soler E.

EMBO J. 2012 Feb 15;31(4):986-99. doi: 10.1038/emboj.2011.450. Epub 2011 Dec 13.

38.

The DNA-binding protein CTCF limits proximal Vκ recombination and restricts κ enhancer interactions to the immunoglobulin κ light chain locus.

Ribeiro de Almeida C, Stadhouders R, de Bruijn MJ, Bergen IM, Thongjuea S, Lenhard B, van Ijcken W, Grosveld F, Galjart N, Soler E, Hendriks RW.

Immunity. 2011 Oct 28;35(4):501-13. doi: 10.1016/j.immuni.2011.07.014.

39.

Derepression of an endogenous long terminal repeat activates the CSF1R proto-oncogene in human lymphoma.

Lamprecht B, Walter K, Kreher S, Kumar R, Hummel M, Lenze D, Köchert K, Bouhlel MA, Richter J, Soler E, Stadhouders R, Jöhrens K, Wurster KD, Callen DF, Harte MF, Giefing M, Barlow R, Stein H, Anagnostopoulos I, Janz M, Cockerill PN, Siebert R, Dörken B, Bonifer C, Mathas S.

Nat Med. 2010 May;16(5):571-9, 1p following 579. doi: 10.1038/nm.2129. Epub 2010 May 2.

PMID:
20436485
40.

The genome-wide dynamics of the binding of Ldb1 complexes during erythroid differentiation.

Soler E, Andrieu-Soler C, de Boer E, Bryne JC, Thongjuea S, Stadhouders R, Palstra RJ, Stevens M, Kockx C, van Ijcken W, Hou J, Steinhoff C, Rijkers E, Lenhard B, Grosveld F.

Genes Dev. 2010 Feb 1;24(3):277-89. doi: 10.1101/gad.551810. Erratum in: Genes Dev. 2010 Mar 15;24(6):623.

41.

The effect of primer-template mismatches on the detection and quantification of nucleic acids using the 5' nuclease assay.

Stadhouders R, Pas SD, Anber J, Voermans J, Mes TH, Schutten M.

J Mol Diagn. 2010 Jan;12(1):109-17. doi: 10.2353/jmoldx.2010.090035. Epub 2009 Nov 30.

Supplemental Content

Loading ...
Support Center