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Items: 1 to 50 of 439

1.

Paradigm shift in species description: the need to move towards a tabular format.

Stackebrandt E, Smith D.

Arch Microbiol. 2019 Mar;201(2):143-145. doi: 10.1007/s00203-018-1609-9. No abstract available.

PMID:
30539264
2.

Expanding the 'Digital Protologue' Database (DPD) to 'Current Microbiology': An Offer to Scientists and Science.

Stackebrandt E, Smith D.

Curr Microbiol. 2017 Sep;74(9):1003-1004. doi: 10.1007/s00284-017-1290-2. No abstract available.

PMID:
28669020
3.

Expanding the 'Digital Protologue' database (DPD) to 'Archives of Microbiology': an offer to scientists and science.

Stackebrandt E, Smith D.

Arch Microbiol. 2017 May;199(4):519-520. doi: 10.1007/s00203-017-1369-y. Epub 2017 Mar 25. No abstract available.

PMID:
28343315
4.

Fueling the Bio-economy: European Culture Collections and Microbiology Education and Training.

Antunes A, Stackebrandt E, Lima N.

Trends Microbiol. 2016 Feb;24(2):77-79. doi: 10.1016/j.tim.2015.11.010. Epub 2015 Dec 23.

PMID:
26727416
5.

High quality draft genome sequence of Flavobacterium rivuli type strain WB 3.3-2(T) (DSM 21788(T)), a valuable source of polysaccharide decomposing enzymes.

Hahnke RL, Stackebrandt E, Meier-Kolthoff JP, Tindall BJ, Huang S, Rohde M, Lapidus A, Han J, Trong S, Haynes M, Reddy TB, Huntemann M, Pati A, Ivanova NN, Mavromatis K, Markowitz V, Woyke T, Göker M, Kyrpides NC, Klenk HP.

Stand Genomic Sci. 2015 Jul 30;10:46. doi: 10.1186/s40793-015-0032-y. eCollection 2015.

6.

The Microbial Resource Research Infrastructure MIRRI: Strength through Coordination.

Stackebrandt E, Schüngel M, Martin D, Smith D.

Microorganisms. 2015 Nov 18;3(4):890-902. doi: 10.3390/microorganisms3040890.

7.

Microbial resource research infrastructure (MIRRI): infrastructure to foster academic research and biotechnological innovation.

Schüngel M, Stackebrandt E.

Biotechnol J. 2015 Jan;10(1):17-9. doi: 10.1002/biot.201400481. Epub 2014 Dec 19.

PMID:
25522722
8.

Extremely 'vanadiphilic' multiply metal-resistant and halophilic aerobic anoxygenic phototrophs, strains EG13 and EG8, from hypersaline springs in Canada.

Csotonyi JT, Maltman C, Swiderski J, Stackebrandt E, Yurkov V.

Extremophiles. 2015 Jan;19(1):127-34. doi: 10.1007/s00792-014-0693-2. Epub 2014 Sep 11.

PMID:
25209747
9.

Geodermatophilus brasiliensis sp. nov., isolated from Brazilian soil.

Bertazzo M, Montero-Calasanz Mdel C, Martinez-Garcia M, Spröer C, Schumann P, Kroppenstedt RM, Stackebrandt E, Klenk HP, Fiedler HP.

Int J Syst Evol Microbiol. 2014 Aug;64(Pt 8):2841-8. doi: 10.1099/ijs.0.062844-0. Epub 2014 May 28.

PMID:
24871776
10.

Deposit of microbial strains in public service collections as part of the publication process to underpin good practice in science.

Stackebrandt E, Smith D, Casaregola S, Varese GC, Verkleij G, Lima N, Bridge P.

Springerplus. 2014 Apr 28;3:208. doi: 10.1186/2193-1801-3-208. eCollection 2014.

11.

Investment into the future of microbial resources: culture collection funding models and BRC business plans for biological resource centres.

Smith D, McCluskey K, Stackebrandt E.

Springerplus. 2014 Feb 12;3:81. doi: 10.1186/2193-1801-3-81. eCollection 2014. Review.

12.

Microbial genomic taxonomy.

Thompson CC, Chimetto L, Edwards RA, Swings J, Stackebrandt E, Thompson FL.

BMC Genomics. 2013 Dec 23;14:913. doi: 10.1186/1471-2164-14-913.

13.

Genome sequence of the free-living aerobic spirochete Turneriella parva type strain (H(T)), and emendation of the species Turneriella parva.

Stackebrandt E, Chertkov O, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Goodwin LA, Pitluck S, Liolios K, Pagani I, Ivanova N, Mavromatis K, Mikhailova N, Huntemann M, Pati A, Chen A, Palaniappan K, Land M, Pan C, Rohde M, Gronow S, Göker M, Detter JC, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Woyke T, Kyrpides NC, Klenk HP.

Stand Genomic Sci. 2013 May 25;8(2):228-38. doi: 10.4056/sigs.3617113. eCollection 2013.

14.

Genome sequence of the phylogenetically isolated spirochete Leptonema illini type strain (3055(T)).

Huntemann M, Stackebrandt E, Held B, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Goodwin LA, Pitluck S, Liolios K, Pagani I, Ivanova N, Mavromatis K, Mikhailova N, Pati A, Chen A, Palaniappan K, Land M, Rohde M, Gronow S, Göker M, Detter JC, Bristow J, Eisen JA, Markowitz V, Woyke T, Hugenholtz P, Kyrpides NC, Klenk HP, Lapidus A.

Stand Genomic Sci. 2013 May 25;8(2):177-87. doi: 10.4056/sigs.3637201. eCollection 2013.

15.

Complete genome sequence of the moderate thermophile Anaerobaculum mobile type strain (NGA(T)).

Mavromatis K, Stackebrandt E, Held B, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Goodwin LA, Pitluck S, Liolios K, Pagani I, Ivanova N, Mikhailova N, Huntemann M, Pati A, Chen A, Palaniappan K, Land M, Rohde M, Spring S, Göker M, Woyke T, Detter JC, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Klenk HP, Kyrpides NC.

Stand Genomic Sci. 2013 Apr 15;8(1):47-57. doi: 10.4056/sigs.3547050. eCollection 2013 Apr 15.

16.

High-quality-draft genome sequence of the yellow-pigmented flavobacterium Joostella marina type strain (En5(T)).

Stackebrandt E, Chertkov O, Lapidus A, Nolan M, Lucas S, Han C, Cheng JF, Tapia R, Goodwin LA, Bruce D, Pitluck S, Liolios K, Mavromatis K, Pagani I, Ivanova N, Mikhailova N, Huntemann M, Pati A, Chen A, Palaniappan K, Rohde M, Tindall BJ, Göker M, Woyke T, Detter JC, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Klenk HP, Kyrpides NC.

Stand Genomic Sci. 2013 Apr 15;8(1):37-46. doi: 10.4056/sigs.3537045. eCollection 2013 Apr 15.

17.

Complete genome sequence of the bile-resistant pigment-producing anaerobe Alistipes finegoldii type strain (AHN2437(T)).

Mavromatis K, Stackebrandt E, Munk C, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Goodwin LA, Pitluck S, Liolios K, Pagani I, Ivanova N, Mikhailova N, Huntemann M, Pati A, Chen A, Palaniappan K, Land M, Hauser L, Rohde M, Gronow S, Göker M, Detter JC, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Woyke T.

Stand Genomic Sci. 2013 Apr 15;8(1):26-36. doi: 10.4056/sigs.3527032. eCollection 2013 Apr 15.

18.

Complete genome sequence of Coriobacterium glomerans type strain (PW2(T)) from the midgut of Pyrrhocoris apterus L. (red soldier bug).

Stackebrandt E, Zeytun A, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Goodwin LA, Pitluck S, Liolios K, Pagani I, Ivanova N, Mavromatis K, Mikhailova N, Huntemann M, Pati A, Chen A, Palaniappan K, Chang YJ, Land M, Hauser L, Rohde M, Pukall R, Göker M, Detter JC, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP.

Stand Genomic Sci. 2013 Apr 15;8(1):15-25. doi: 10.4056/sigs.3507020. eCollection 2013 Apr 15.

19.

Deposition of microbial strains in public resource centres: safeguarding valuable resources for academic and applied research.

Stackebrandt E.

Res Microbiol. 2012 Sep-Oct;163(8):487-9. doi: 10.1016/j.resmic.2012.07.003. Epub 2012 Jul 15. No abstract available.

PMID:
22809688
20.

Resistance of bacterial endospores to outer space for planetary protection purposes--experiment PROTECT of the EXPOSE-E mission.

Horneck G, Moeller R, Cadet J, Douki T, Mancinelli RL, Nicholson WL, Panitz C, Rabbow E, Rettberg P, Spry A, Stackebrandt E, Vaishampayan P, Venkateswaran KJ.

Astrobiology. 2012 May;12(5):445-56. doi: 10.1089/ast.2011.0737.

21.

Reclassification of Koreibacter algae as a later heterotypic synonym of Paraoerskovia marina and emended descriptions of the genus Paraoerskovia Khan et al. 2009 and of Paraoerskovia marina Khan et al. 2009.

Schumann P, Pukall R, Spröer C, Stackebrandt E.

Int J Syst Evol Microbiol. 2013 Jan;63(Pt 1):219-23. doi: 10.1099/ijs.0.040600-0. Epub 2012 Mar 2.

PMID:
22389283
22.

Chromocurvus halotolerans gen. nov., sp. nov., a gammaproteobacterial obligately aerobic anoxygenic phototroph, isolated from a Canadian hypersaline spring.

Csotonyi JT, Stackebrandt E, Swiderski J, Schumann P, Yurkov V.

Arch Microbiol. 2011 Aug;193(8):573-82. doi: 10.1007/s00203-011-0698-5. Epub 2011 Apr 9.

PMID:
21479531
23.

Towards a strategy to enhance access to microbial diversity.

Stackebrandt E.

Int J Syst Evol Microbiol. 2011 Mar;61(Pt 3):479-81. doi: 10.1099/ijs.0.027615-0. No abstract available.

PMID:
21386100
24.

An alphaproteobacterium capable of both aerobic and anaerobic anoxygenic photosynthesis but incapable of photoautotrophy: Charonomicrobium ambiphototrophicum, gen. nov., sp. nov.

Csotonyi JT, Stackebrandt E, Swiderski J, Schumann P, Yurkov V.

Photosynth Res. 2011 Mar;107(3):257-68. doi: 10.1007/s11120-011-9629-1. Epub 2011 Feb 10.

PMID:
21308412
25.

Significant differences exist between the type strain of a newly described bacterial species and a non-type strain included in the original or other scientific publications.

Stackebrandt E.

Arch Microbiol. 2011 Mar;193(3):155-6. doi: 10.1007/s00203-010-0675-4. Epub 2011 Jan 15. No abstract available.

PMID:
21234747
27.

A new environment for aerobic anoxygenic phototrophic bacteria: biological soil crusts.

Csotonyi JT, Swiderski J, Stackebrandt E, Yurkov V.

Environ Microbiol Rep. 2010 Oct;2(5):651-6. doi: 10.1111/j.1758-2229.2010.00151.x.

PMID:
23766251
28.

Bacterial diversity in the haloalkaline Lake Elmenteita, Kenya.

Mwirichia R, Cousin S, Muigai AW, Boga HI, Stackebrandt E.

Curr Microbiol. 2011 Jan;62(1):209-21. doi: 10.1007/s00284-010-9692-4. Epub 2010 Jun 27.

PMID:
20582590
29.

Diversification and focusing: strategies of microbial culture collections.

Stackebrandt E.

Trends Microbiol. 2010 Jul;18(7):283-7. doi: 10.1016/j.tim.2010.05.001. Epub 2010 Jun 9.

PMID:
20542698
30.

A new extreme environment for aerobic anoxygenic phototrophs: biological soil crusts.

Csotonyi JT, Swiderski J, Stackebrandt E, Yurkov V.

Adv Exp Med Biol. 2010;675:3-14. doi: 10.1007/978-1-4419-1528-3_1.

PMID:
20532732
31.

Isolation and characterisation of bacteria from the haloalkaline Lake Elmenteita, Kenya.

Mwirichia R, Muigai AW, Tindall B, Boga HI, Stackebrandt E.

Extremophiles. 2010 Jul;14(4):339-48. doi: 10.1007/s00792-010-0311-x. Epub 2010 Apr 17.

PMID:
20401502
32.

Aeromonas rivuli sp. nov., isolated from the upstream region of a karst water rivulet.

Figueras MJ, Alperi A, Beaz-Hidalgo R, Stackebrandt E, Brambilla E, Monera A, Martínez-Murcia AJ.

Int J Syst Evol Microbiol. 2011 Feb;61(Pt 2):242-8. doi: 10.1099/ijs.0.016139-0. Epub 2010 Mar 5.

PMID:
20207806
33.

Biosurfactant production by halotolerant Rhodococcus fascians from Casey Station, Wilkes Land, Antarctica.

Gesheva V, Stackebrandt E, Vasileva-Tonkova E.

Curr Microbiol. 2010 Aug;61(2):112-7. doi: 10.1007/s00284-010-9584-7. Epub 2010 Feb 5.

PMID:
20135319
34.

Archaeal diversity in the haloalkaline Lake Elmenteita in Kenya.

Mwirichia R, Cousin S, Muigai AW, Boga HI, Stackebrandt E.

Curr Microbiol. 2010 Jan;60(1):47-52. doi: 10.1007/s00284-009-9500-1. Epub 2009 Oct 6.

PMID:
19806396
35.

The complete genome sequence of the algal symbiont Dinoroseobacter shibae: a hitchhiker's guide to life in the sea.

Wagner-Döbler I, Ballhausen B, Berger M, Brinkhoff T, Buchholz I, Bunk B, Cypionka H, Daniel R, Drepper T, Gerdts G, Hahnke S, Han C, Jahn D, Kalhoefer D, Kiss H, Klenk HP, Kyrpides N, Liebl W, Liesegang H, Meincke L, Pati A, Petersen J, Piekarski T, Pommerenke C, Pradella S, Pukall R, Rabus R, Stackebrandt E, Thole S, Thompson L, Tielen P, Tomasch J, von Jan M, Wanphrut N, Wichels A, Zech H, Simon M.

ISME J. 2010 Jan;4(1):61-77. doi: 10.1038/ismej.2009.94. Epub 2009 Sep 10.

PMID:
19741735
36.

Tsukamurella soli sp. nov., isolated from soil.

Weon HY, Yoo SH, Anandham R, Schumann P, Kroppenstedt RM, Kwon SW, Stackebrandt E.

Int J Syst Evol Microbiol. 2010 Jul;60(Pt 7):1667-71. doi: 10.1099/ijs.0.014852-0. Epub 2009 Sep 4.

PMID:
19734289
37.

Pseudomonas extremaustralis sp. nov., a Poly(3-hydroxybutyrate) producer isolated from an antarctic environment.

López NI, Pettinari MJ, Stackebrandt E, Tribelli PM, Põtter M, Steinbüchel A, Méndez BS.

Curr Microbiol. 2009 Nov;59(5):514-9. doi: 10.1007/s00284-009-9469-9. Epub 2009 Aug 18.

PMID:
19688380
38.

Ochrobactrum ciceri sp. nov., isolated from nodules of Cicer arietinum.

Imran A, Hafeez FY, Frühling A, Schumann P, Malik KA, Stackebrandt E.

Int J Syst Evol Microbiol. 2010 Jul;60(Pt 7):1548-53. doi: 10.1099/ijs.0.013987-0. Epub 2009 Aug 14.

PMID:
19684324
39.

Terrabacter aeriphilus sp. nov., isolated from an air sample.

Weon HY, Son JA, Yoo SH, Kim BY, Kwon SW, Schumann P, Kroppenstedt R, Stackebrandt E.

Int J Syst Evol Microbiol. 2010 May;60(Pt 5):1130-4. doi: 10.1099/ijs.0.016444-0. Epub 2009 Aug 7.

PMID:
19666794
40.

Polynucleobacter cosmopolitanus sp. nov., free-living planktonic bacteria inhabiting freshwater lakes and rivers.

Hahn MW, Lang E, Brandt U, Lünsdorf H, Wu QL, Stackebrandt E.

Int J Syst Evol Microbiol. 2010 Jan;60(Pt 1):166-73. doi: 10.1099/ijs.0.010595-0. Epub 2009 Jul 31.

41.

Flavobacterium rivuli sp. nov., Flavobacterium subsaxonicum sp. nov., Flavobacterium swingsii sp. nov. and Flavobacterium reichenbachii sp. nov., isolated from a hard water rivulet.

Ali Z, Cousin S, Frühling A, Brambilla E, Schumann P, Yang Y, Stackebrandt E.

Int J Syst Evol Microbiol. 2009 Oct;59(Pt 10):2610-7. doi: 10.1099/ijs.0.008771-0. Epub 2009 Jul 21.

PMID:
19622646
43.
44.

Massilia niabensis sp. nov. and Massilia niastensis sp. nov., isolated from air samples.

Weon HY, Kim BY, Hong SB, Jeon YA, Koo BS, Kwon SW, Stackebrandt E.

Int J Syst Evol Microbiol. 2009 Jul;59(Pt 7):1656-60. doi: 10.1099/ijs.0.006908-0. Epub 2009 Jun 19.

PMID:
19542125
45.

Re-examination of the taxonomic position of Bacillus silvestris Rheims et al. 1999 and proposal to transfer it to Solibacillus gen. nov. as Solibacillus silvestris comb. nov.

Krishnamurthi S, Chakrabarti T, Stackebrandt E.

Int J Syst Evol Microbiol. 2009 May;59(Pt 5):1054-8. doi: 10.1099/ijs.0.65742-0.

PMID:
19406792
47.

Cellulomonas aerilata sp. nov., isolated from an air sample.

Lee CM, Weon HY, Hong SB, Jeon YA, Schumann P, Kroppenstedt RM, Kwon SW, Stackebrandt E.

Int J Syst Evol Microbiol. 2008 Dec;58(Pt 12):2925-9. doi: 10.1099/ijs.0.2008/002253-0.

PMID:
19060084
48.

Bacterial and archaeal populations at two shallow hydrothermal vents off Panarea Island (Eolian Islands, Italy).

Maugeri TL, Lentini V, Gugliandolo C, Italiano F, Cousin S, Stackebrandt E.

Extremophiles. 2009 Jan;13(1):199-212. doi: 10.1007/s00792-008-0210-6. Epub 2008 Dec 3.

PMID:
19050821
49.

Reclassification of Myxococcus flavescens Yamanaka et al. 1990VP as a later synonym of Myxococcus virescens Thaxter 1892AL.

Lang E, Kroppenstedt RM, Sträubler B, Stackebrandt E.

Int J Syst Evol Microbiol. 2008 Nov;58(Pt 11):2607-9. doi: 10.1099/ijs.0.2008/001859-0.

PMID:
18984701
50.

Phenylobacterium composti sp. nov., isolated from cotton waste compost in Korea.

Weon HY, Kim BY, Kwon SW, Go SJ, Koo BS, Stackebrandt E.

Int J Syst Evol Microbiol. 2008 Oct;58(Pt 10):2301-4. doi: 10.1099/ijs.0.65530-0.

PMID:
18842845

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