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The recent emergence of a highly related virulent Clostridium difficile clade with unique characteristics.

Shaw HA, Preston MD, Vendrik KEW, Cairns MD, Browne HP, Stabler RA, Crobach MJT, Corver J, Pituch H, Ingebretsen A, Pirmohamed M, Faulds-Pain A, Valiente E, Lawley TD, Fairweather NF, Kuijper EJ, Wren BW.

Clin Microbiol Infect. 2019 Sep 13. pii: S1198-743X(19)30489-6. doi: 10.1016/j.cmi.2019.09.004. [Epub ahead of print]


Subscription model for antibiotic development.

Glover RE, Manton J, Willcocks S, Stabler RA.

BMJ. 2019 Sep 6;366:l5364. doi: 10.1136/bmj.l5364. No abstract available.


Genetic and virulence characterization of colistin-resistant and colistin-sensitive A. baumannii clinical isolates.

Leite GC, Stabler RA, Neves P, Perdigão Neto LV, Ruedas Martins RC, Rizek C, Rossi F, Levin AS, Costa SF.

Diagn Microbiol Infect Dis. 2019 Sep;95(1):99-101. doi: 10.1016/j.diagmicrobio.2019.04.013. Epub 2019 May 16.


Simultaneous colonization by Escherichia coli and Klebsiella pneumoniae harboring mcr-1 in Brazil.

Perdigão Neto LV, Corscadden L, Martins RCR, Nagano DS, Cunha MPV, Neves PR, Franco LAM, Moura MLN, Rizek CF, Guimarães T, Boszczowski Í, Rossi F, Levin AS, Stabler RA, Costa SF.

Infection. 2019 Aug;47(4):661-664. doi: 10.1007/s15010-019-01309-2. Epub 2019 Apr 25.


Impact of Eimeria tenella Coinfection on Campylobacter jejuni Colonization of the Chicken.

Macdonald SE, van Diemen PM, Martineau H, Stevens MP, Tomley FM, Stabler RA, Blake DP.

Infect Immun. 2019 Jan 24;87(2). pii: e00772-18. doi: 10.1128/IAI.00772-18. Print 2019 Feb.


High-throughput analysis of Yersinia pseudotuberculosis gene essentiality in optimised in vitro conditions, and implications for the speciation of Yersinia pestis.

Willcocks SJ, Stabler RA, Atkins HS, Oyston PF, Wren BW.

BMC Microbiol. 2018 May 31;18(1):46. doi: 10.1186/s12866-018-1189-5.


Genome-Wide Identification by Transposon Insertion Sequencing of Escherichia coli K1 Genes Essential for In Vitro Growth, Gastrointestinal Colonizing Capacity, and Survival in Serum.

McCarthy AJ, Stabler RA, Taylor PW.

J Bacteriol. 2018 Mar 12;200(7). pii: e00698-17. doi: 10.1128/JB.00698-17. Print 2018 Apr 1.


Supporting surveillance capacity for antimicrobial resistance: Laboratory capacity strengthening for drug resistant infections in low and middle income countries.

Seale AC, Hutchison C, Fernandes S, Stoesser N, Kelly H, Lowe B, Turner P, Hanson K, Chandler CIR, Goodman C, Stabler RA, Scott JAG.

Wellcome Open Res. 2017 Sep 26;2:91. doi: 10.12688/wellcomeopenres.12523.1. eCollection 2017.


Frequent Undetected Ward-Based Methicillin-Resistant Staphylococcus aureus Transmission Linked to Patient Sharing Between Hospitals.

Tosas Auguet O, Stabler RA, Betley J, Preston MD, Dhaliwal M, Gaunt M, Ioannou A, Desai N, Karadag T, Batra R, Otter JA, Marbach H, Clark TG, Edgeworth JD.

Clin Infect Dis. 2018 Mar 5;66(6):840-848. doi: 10.1093/cid/cix901.


Effects of Eimeria tenella infection on chicken caecal microbiome diversity, exploring variation associated with severity of pathology.

Macdonald SE, Nolan MJ, Harman K, Boulton K, Hume DA, Tomley FM, Stabler RA, Blake DP.

PLoS One. 2017 Sep 21;12(9):e0184890. doi: 10.1371/journal.pone.0184890. eCollection 2017.


Impact of the Mk VI SkinSuit on skin microbiota of terrestrial volunteers and an International Space Station-bound astronaut.

Stabler RA, Rosado H, Doyle R, Negus D, Carvil PA, Kristjánsson JG, Green DA, Franco-Cendejas R, Davies C, Mogensen A, Scott J, Taylor PW.

NPJ Microgravity. 2017 Sep 7;3:23. doi: 10.1038/s41526-017-0029-5. eCollection 2017.


In Vitro Susceptibility to Closthioamide among Clinical and Reference Strains of Neisseria gonorrhoeae.

Miari VF, Solanki P, Hleba Y, Stabler RA, Heap JT.

Antimicrob Agents Chemother. 2017 Sep 22;61(10). pii: e00929-17. doi: 10.1128/AAC.00929-17. Print 2017 Oct.


Correction for Cairns et al., "Comparative Genome Analysis and Global Phylogeny of the Toxin Variant Clostridium difficile PCR Ribotype 017 Reveals the Evolution of Two Independent Sublineages".

Cairns MD, Preston MD, Hall CL, Gerding DN, Hawkey PM, Kato H, Kim H, Kuijper EJ, Lawley TD, Pituch H, Reid S, Kullin B, Riley TV, Solomon K, Tsai PJ, Weese JS, Stabler RA, Wren BW.

J Clin Microbiol. 2017 Jun;55(6):1971. doi: 10.1128/JCM.00487-17. No abstract available.


Comparative Genome Analysis and Global Phylogeny of the Toxin Variant Clostridium difficile PCR Ribotype 017 Reveals the Evolution of Two Independent Sublineages.

Cairns MD, Preston MD, Hall CL, Gerding DN, Hawkey PM, Kato H, Kim H, Kuijper EJ, Lawley TD, Pituch H, Reid S, Kullin B, Riley TV, Solomon K, Tsai PJ, Weese JS, Stabler RA, Wren BW.

J Clin Microbiol. 2017 Mar;55(3):865-876. doi: 10.1128/JCM.01296-16. Epub 2016 Dec 28. Erratum in: J Clin Microbiol. 2017 Jun;55(6):1971.


Pathoadaptive Mutations of Escherichia coli K1 in Experimental Neonatal Systemic Infection.

McCarthy AJ, Negus D, Martin P, Pechincha C, Oswald E, Stabler RA, Taylor PW.

PLoS One. 2016 Nov 18;11(11):e0166793. doi: 10.1371/journal.pone.0166793. eCollection 2016.


Draft Genome Sequence of Robinsoniella peoriensis 6600698, a Confounder of Clostridium difficile Diagnosis.

Roberts CH, Shaw HA, Ferguson N, Holland M, Wren BW, Stabler RA.

Genome Announc. 2016 Nov 17;4(6). pii: e01275-16. doi: 10.1128/genomeA.01275-16.


Role of Glycosyltransferases Modifying Type B Flagellin of Emerging Hypervirulent Clostridium difficile Lineages and Their Impact on Motility and Biofilm Formation.

Valiente E, Bouché L, Hitchen P, Faulds-Pain A, Songane M, Dawson LF, Donahue E, Stabler RA, Panico M, Morris HR, Bajaj-Elliott M, Logan SM, Dell A, Wren BW.

J Biol Chem. 2016 Dec 2;291(49):25450-25461. Epub 2016 Oct 4.


From FASTQ to Function: In Silico Methods for Processing Next-Generation Sequencing Data.

Preston MD, Stabler RA.

Methods Mol Biol. 2016;1476:23-33. doi: 10.1007/978-1-4939-6361-4_3.


The induction and identification of novel Colistin resistance mutations in Acinetobacter baumannii and their implications.

Thi Khanh Nhu N, Riordan DW, Do Hoang Nhu T, Thanh DP, Thwaites G, Huong Lan NP, Wren BW, Baker S, Stabler RA.

Sci Rep. 2016 Jun 22;6:28291. doi: 10.1038/srep28291.


Evidence for Community Transmission of Community-Associated but Not Health-Care-Associated Methicillin-Resistant Staphylococcus Aureus Strains Linked to Social and Material Deprivation: Spatial Analysis of Cross-sectional Data.

Tosas Auguet O, Betley JR, Stabler RA, Patel A, Ioannou A, Marbach H, Hearn P, Aryee A, Goldenberg SD, Otter JA, Desai N, Karadag T, Grundy C, Gaunt MW, Cooper BS, Edgeworth JD, Kypraios T.

PLoS Med. 2016 Jan 26;13(1):e1001944. doi: 10.1371/journal.pmed.1001944. eCollection 2016 Jan.


Genomic Epidemiology of a Protracted Hospital Outbreak Caused by a Toxin A-Negative Clostridium difficile Sublineage PCR Ribotype 017 Strain in London, England.

Cairns MD, Preston MD, Lawley TD, Clark TG, Stabler RA, Wren BW.

J Clin Microbiol. 2015 Oct;53(10):3141-7. doi: 10.1128/JCM.00648-15. Epub 2015 Jul 15.


The Genotoxin Colibactin Is a Determinant of Virulence in Escherichia coli K1 Experimental Neonatal Systemic Infection.

McCarthy AJ, Martin P, Cloup E, Stabler RA, Oswald E, Taylor PW.

Infect Immun. 2015 Sep;83(9):3704-11. doi: 10.1128/IAI.00716-15. Epub 2015 Jul 6.


Prevalence of Type VI Secretion System in Spanish Campylobacter jejuni Isolates.

Ugarte-Ruiz M, Stabler RA, Domínguez L, Porrero MC, Wren BW, Dorrell N, Gundogdu O.

Zoonoses Public Health. 2015 Nov;62(7):497-500. doi: 10.1111/zph.12176. Epub 2014 Dec 13.


Genome-wide evaluation of the interplay between Caenorhabditis elegans and Yersinia pseudotuberculosis during in vivo biofilm formation.

Joshua GW, Atkinson S, Goldstone RJ, Patrick HL, Stabler RA, Purves J, Cámara M, Williams P, Wren BW.

Infect Immun. 2015 Jan;83(1):17-27. doi: 10.1128/IAI.00110-14. Epub 2014 Oct 13.


Host immunity to Clostridium difficile PCR ribotype 017 strains.

Jafari NV, Songane M, Stabler RA, Elawad M, Wren BW, Allan E, Bajaj-Elliott M.

Infect Immun. 2014 Dec;82(12):4989-96. doi: 10.1128/IAI.02605-14. Epub 2014 Sep 15.


Staphylococcal phenotypes induced by naturally occurring and synthetic membrane-interactive polyphenolic β-lactam resistance modifiers.

Palacios L, Rosado H, Micol V, Rosato AE, Bernal P, Arroyo R, Grounds H, Anderson JC, Stabler RA, Taylor PW.

PLoS One. 2014 Apr 3;9(4):e93830. doi: 10.1371/journal.pone.0093830. eCollection 2014.


Altered innate defenses in the neonatal gastrointestinal tract in response to colonization by neuropathogenic Escherichia coli.

Birchenough GM, Johansson ME, Stabler RA, Dalgakiran F, Hansson GC, Wren BW, Luzio JP, Taylor PW.

Infect Immun. 2013 Sep;81(9):3264-75. doi: 10.1128/IAI.00268-13. Epub 2013 Jun 24.


Transcriptional analysis of temporal gene expression in germinating Clostridium difficile 630 endospores.

Dembek M, Stabler RA, Witney AA, Wren BW, Fairweather NF.

PLoS One. 2013 May 15;8(5):e64011. doi: 10.1371/journal.pone.0064011. Print 2013.


Characterization of water and wildlife strains as a subgroup of Campylobacter jejuni using DNA microarrays.

Stabler RA, Larsson JT, Al-Jaberi S, Nielsen EM, Kay E, Tam CC, Higgins CD, Rodrigues LC, Richardson JF, O'Brien SJ, Wren BW.

Environ Microbiol. 2013 Aug;15(8):2371-83. doi: 10.1111/1462-2920.12111. Epub 2013 Mar 26.


Draft Genome Sequences of Pseudomonas fluorescens BS2 and Pusillimonas noertemannii BS8, Soil Bacteria That Cooperate To Degrade the Poly-γ-d-Glutamic Acid Anthrax Capsule.

Stabler RA, Negus D, Pain A, Taylor PW.

Genome Announc. 2013 Jan;1(1). pii: e00057-12. doi: 10.1128/genomeA.00057-12. Epub 2013 Jan 24.


Comparative phylogenomics of Streptococcus pneumoniae isolated from invasive disease and nasopharyngeal carriage from West Africans.

Donkor ES, Stabler RA, Hinds J, Adegbola RA, Antonio M, Wren BW.

BMC Genomics. 2012 Oct 29;13:569. doi: 10.1186/1471-2164-13-569.


The continually evolving Clostridium difficile species.

Cairns MD, Stabler RA, Shetty N, Wren BW.

Future Microbiol. 2012 Aug;7(8):945-57. doi: 10.2217/fmb.12.73. Review.


Phenotypic and genotypic characterizations of Campylobacter jejuni isolated from the broiler meat production process.

Kudirkienė E, Cohn MT, Stabler RA, Strong PC, Sernienė L, Wren BW, Nielsen EM, Malakauskas M, Brøndsted L.

Curr Microbiol. 2012 Oct;65(4):398-406. doi: 10.1007/s00284-012-0170-z. Epub 2012 Jun 27.


Macro and micro diversity of Clostridium difficile isolates from diverse sources and geographical locations.

Stabler RA, Dawson LF, Valiente E, Cairns MD, Martin MJ, Donahue EH, Riley TV, Songer JG, Kuijper EJ, Dingle KE, Wren BW.

PLoS One. 2012;7(3):e31559. doi: 10.1371/journal.pone.0031559. Epub 2012 Mar 2.


Cellular response of Campylobacter jejuni to trisodium phosphate.

Riedel CT, Cohn MT, Stabler RA, Wren B, Brøndsted L.

Appl Environ Microbiol. 2012 Mar;78(5):1411-5. doi: 10.1128/AEM.06556-11. Epub 2011 Dec 22.


Emergence of new PCR ribotypes from the hypervirulent Clostridium difficile 027 lineage.

Valiente E, Dawson LF, Cairns MD, Stabler RA, Wren BW.

J Med Microbiol. 2012 Jan;61(Pt 1):49-56. doi: 10.1099/jmm.0.036194-0. Epub 2011 Sep 8.


In-depth genetic analysis of Clostridium difficile PCR-ribotype 027 strains reveals high genome fluidity including point mutations and inversions.

Stabler RA, Valiente E, Dawson LF, He M, Parkhill J, Wren BW.

Gut Microbes. 2010 Jul;1(4):269-276. Epub 2010 Mar 16.


Effect of chicken meat environment on gene expression of Campylobacter jejuni and its relevance to survival in food.

Ligowska M, Cohn MT, Stabler RA, Wren BW, Brøndsted L.

Int J Food Microbiol. 2011 Mar 1;145 Suppl 1:S111-5. doi: 10.1016/j.ijfoodmicro.2010.08.027. Epub 2010 Sep 7.


Global transcriptional profiling of Burkholderia pseudomallei under salt stress reveals differential effects on the Bsa type III secretion system.

Pumirat P, Cuccui J, Stabler RA, Stevens JM, Muangsombut V, Singsuksawat E, Stevens MP, Wren BW, Korbsrisate S.

BMC Microbiol. 2010 Jun 14;10:171. doi: 10.1186/1471-2180-10-171.


Evolutionary dynamics of Clostridium difficile over short and long time scales.

He M, Sebaihia M, Lawley TD, Stabler RA, Dawson LF, Martin MJ, Holt KE, Seth-Smith HM, Quail MA, Rance R, Brooks K, Churcher C, Harris D, Bentley SD, Burrows C, Clark L, Corton C, Murray V, Rose G, Thurston S, van Tonder A, Walker D, Wren BW, Dougan G, Parkhill J.

Proc Natl Acad Sci U S A. 2010 Apr 20;107(16):7527-32. doi: 10.1073/pnas.0914322107. Epub 2010 Apr 5.


Comparative genome and phenotypic analysis of Clostridium difficile 027 strains provides insight into the evolution of a hypervirulent bacterium.

Stabler RA, He M, Dawson L, Martin M, Valiente E, Corton C, Lawley TD, Sebaihia M, Quail MA, Rose G, Gerding DN, Gibert M, Popoff MR, Parkhill J, Dougan G, Wren BW.

Genome Biol. 2009;10(9):R102. doi: 10.1186/gb-2009-10-9-r102. Epub 2009 Sep 25.


Antibiotic treatment of clostridium difficile carrier mice triggers a supershedder state, spore-mediated transmission, and severe disease in immunocompromised hosts.

Lawley TD, Clare S, Walker AW, Goulding D, Stabler RA, Croucher N, Mastroeni P, Scott P, Raisen C, Mottram L, Fairweather NF, Wren BW, Parkhill J, Dougan G.

Infect Immun. 2009 Sep;77(9):3661-9. doi: 10.1128/IAI.00558-09. Epub 2009 Jun 29.


Development and application of the active surveillance of pathogens microarray to monitor bacterial gene flux.

Stabler RA, Dawson LF, Oyston PC, Titball RW, Wade J, Hinds J, Witney AA, Wren BW.

BMC Microbiol. 2008 Oct 9;8:177. doi: 10.1186/1471-2180-8-177.


Separated at birth? Microarray analysis of two strikingly similar yersinia species.

Hinchliffe SJ, Isherwood KE, Stabler RA, Oyston PC, Hinds J, Titbal RW, Wren BW.

Comp Funct Genomics. 2002;3(4):355-7. doi: 10.1002/cfg.195. No abstract available.


Comparative analysis of BI/NAP1/027 hypervirulent strains reveals novel toxin B-encoding gene (tcdB) sequences.

Stabler RA, Dawson LF, Phua LT, Wren BW.

J Med Microbiol. 2008 Jun;57(Pt 6):771-5. doi: 10.1099/jmm.0.47743-0.


Microarray analysis of the transcriptional responses of Clostridium difficile to environmental and antibiotic stress.

Emerson JE, Stabler RA, Wren BW, Fairweather NF.

J Med Microbiol. 2008 Jun;57(Pt 6):757-64. doi: 10.1099/jmm.0.47657-0.


Assessing the role of p-cresol tolerance in Clostridium difficile.

Dawson LF, Stabler RA, Wren BW.

J Med Microbiol. 2008 Jun;57(Pt 6):745-9. doi: 10.1099/jmm.0.47744-0.


Comparative phylogenomics of Clostridium difficile reveals clade specificity and microevolution of hypervirulent strains.

Stabler RA, Gerding DN, Songer JG, Drudy D, Brazier JS, Trinh HT, Witney AA, Hinds J, Wren BW.

J Bacteriol. 2006 Oct;188(20):7297-305.


Microarrays reveal that each of the ten dominant lineages of Staphylococcus aureus has a unique combination of surface-associated and regulatory genes.

Lindsay JA, Moore CE, Day NP, Peacock SJ, Witney AA, Stabler RA, Husain SE, Butcher PD, Hinds J.

J Bacteriol. 2006 Jan;188(2):669-76.


Design, validation, and application of a seven-strain Staphylococcus aureus PCR product microarray for comparative genomics.

Witney AA, Marsden GL, Holden MT, Stabler RA, Husain SE, Vass JK, Butcher PD, Hinds J, Lindsay JA.

Appl Environ Microbiol. 2005 Nov;71(11):7504-14.

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