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Mutagenesis of Vibrio fischeri and Other Marine Bacteria Using Hyperactive Mini-Tn5 Derivatives.

Stoudenmire JL, Black M, Fidopiastis PM, Stabb EV.

Methods Mol Biol. 2019;2016:87-104. doi: 10.1007/978-1-4939-9570-7_9.


Special Meeting Sections for the 7th Conference on Beneficial Microbes.

Stabb EV.

Appl Environ Microbiol. 2019 May 2;85(10). pii: e00497-19. doi: 10.1128/AEM.00497-19. Print 2019 May 15. No abstract available.


Bacterial Analogs of Plant Tetrahydropyridine Alkaloids Mediate Microbial Interactions in a Rhizosphere Model System.

Lozano GL, Park HB, Bravo JI, Armstrong EA, Denu JM, Stabb EV, Broderick NA, Crawford JM, Handelsman J.

Appl Environ Microbiol. 2019 May 2;85(10). pii: e03058-18. doi: 10.1128/AEM.03058-18. Print 2019 May 15.


Introducing THOR, a Model Microbiome for Genetic Dissection of Community Behavior.

Lozano GL, Bravo JI, Garavito Diago MF, Park HB, Hurley A, Peterson SB, Stabb EV, Crawford JM, Broderick NA, Handelsman J.

mBio. 2019 Mar 5;10(2). pii: e02846-18. doi: 10.1128/mBio.02846-18.


Should they stay or should they go? Nitric oxide and the clash of regulators governing Vibrio fischeri biofilm formation.

Stabb EV.

Mol Microbiol. 2019 Jan;111(1):1-5. doi: 10.1111/mmi.14163. Epub 2018 Dec 9.


An Iterative, Synthetic Approach To Engineer a High-Performance PhoB-Specific Reporter.

Stoudenmire JL, Essock-Burns T, Weathers EN, Solaimanpour S, Mrázek J, Stabb EV.

Appl Environ Microbiol. 2018 Jul 2;84(14). pii: e00603-18. doi: 10.1128/AEM.00603-18. Print 2018 Jul 15.


Vibrio fischeri DarR Directs Responses to d-Aspartate and Represents a Group of Similar LysR-Type Transcriptional Regulators.

Jones RM Jr, Popham DL, Schmidt AL, Neidle EL, Stabb EV.

J Bacteriol. 2018 Jul 10;200(15). pii: e00773-17. doi: 10.1128/JB.00773-17. Print 2018 Aug 1.


Comparative analysis reveals regulatory motifs at the ainS/ainR pheromone-signaling locus of Vibrio fischeri.

Kimbrough JH, Stabb EV.

Sci Rep. 2017 Sep 15;7(1):11734. doi: 10.1038/s41598-017-11967-7.


Metabolite exchange between microbiome members produces compounds that influence Drosophila behavior.

Fischer CN, Trautman EP, Crawford JM, Stabb EV, Handelsman J, Broderick NA.

Elife. 2017 Jan 9;6. pii: e18855. doi: 10.7554/eLife.18855.


An Expanded Transposon Mutant Library Reveals that Vibrio fischeri δ-Aminolevulinate Auxotrophs Can Colonize Euprymna scolopes.

Lyell NL, Septer AN, Dunn AK, Duckett D, Stoudenmire JL, Stabb EV.

Appl Environ Microbiol. 2017 Feb 15;83(5). pii: e02470-16. doi: 10.1128/AEM.02470-16. Print 2017 Mar 1.


Genomic and Secondary Metabolite Analyses of Streptomyces sp. 2AW Provide Insight into the Evolution of the Cycloheximide Pathway.

Stulberg ER, Lozano GL, Morin JB, Park H, Baraban EG, Mlot C, Heffelfinger C, Phillips GM, Rush JS, Phillips AJ, Broderick NA, Thomas MG, Stabb EV, Handelsman J.

Front Microbiol. 2016 May 3;7:573. doi: 10.3389/fmicb.2016.00573. eCollection 2016.


Antisocial luxO Mutants Provide a Stationary-Phase Survival Advantage in Vibrio fischeri ES114.

Kimbrough JH, Stabb EV.

J Bacteriol. 2015 Dec 7;198(4):673-87. doi: 10.1128/JB.00807-15.


Regulation of Bioluminescence in Photobacterium leiognathi Strain KNH6.

Dunn AK, Rader BA, Stabb EV, Mandel MJ.

J Bacteriol. 2015 Dec;197(23):3676-85. doi: 10.1128/JB.00524-15. Epub 2015 Sep 8.


Rethinking the roles of CRP, cAMP, and sugar-mediated global regulation in the Vibrionaceae.

Colton DM, Stabb EV.

Curr Genet. 2016 Feb;62(1):39-45. doi: 10.1007/s00294-015-0508-8. Epub 2015 Jul 28. Review.


Growth on glucose decreases cAMP-CRP activity while paradoxically increasing intracellular cAMP in the light-organ symbiont Vibrio fischeri.

Colton DM, Stoudenmire JL, Stabb EV.

Mol Microbiol. 2015 Sep;97(6):1114-27. doi: 10.1111/mmi.13087. Epub 2015 Jul 17.


Modeling Analysis of Signal Sensitivity and Specificity by Vibrio fischeri LuxR Variants.

Colton DM, Stabb EV, Hagen SJ.

PLoS One. 2015 May 11;10(5):e0126474. doi: 10.1371/journal.pone.0126474. eCollection 2015.


Bright luminescence of Vibrio fischeri aconitase mutants reveals a connection between citrate and the Gac/Csr regulatory system.

Septer AN, Bose JL, Lipzen A, Martin J, Whistler C, Stabb EV.

Mol Microbiol. 2015 Jan;95(2):283-96. doi: 10.1111/mmi.12864. Epub 2014 Dec 19.


Substrate specificity and function of the pheromone receptor AinR in Vibrio fischeri ES114.

Kimbrough JH, Stabb EV.

J Bacteriol. 2013 Nov;195(22):5223-32. doi: 10.1128/JB.00913-13. Epub 2013 Sep 20.


Cyclic AMP receptor protein regulates pheromone-mediated bioluminescence at multiple levels in Vibrio fischeri ES114.

Lyell NL, Colton DM, Bose JL, Tumen-Velasquez MP, Kimbrough JH, Stabb EV.

J Bacteriol. 2013 Nov;195(22):5051-63. doi: 10.1128/JB.00751-13. Epub 2013 Aug 30.


Symbiotic characterization of Vibrio fischeri ES114 mutants that display enhanced luminescence in culture.

Lyell NL, Stabb EV.

Appl Environ Microbiol. 2013 Apr;79(7):2480-3. doi: 10.1128/AEM.03111-12. Epub 2013 Feb 1.


The iron-dependent regulator fur controls pheromone signaling systems and luminescence in the squid symbiont Vibrio fischeri ES114.

Septer AN, Lyell NL, Stabb EV.

Appl Environ Microbiol. 2013 Mar;79(6):1826-34. doi: 10.1128/AEM.03079-12. Epub 2013 Jan 11.


Coordination of the arc regulatory system and pheromone-mediated positive feedback in controlling the Vibrio fischeri lux operon.

Septer AN, Stabb EV.

PLoS One. 2012;7(11):e49590. doi: 10.1371/journal.pone.0049590. Epub 2012 Nov 13.


The Escherichia coli protein YfeX functions as a porphyrinogen oxidase, not a heme dechelatase.

Dailey HA, Septer AN, Daugherty L, Thames D, Gerdes S, Stabb EV, Dunn AK, Dailey TA, Phillips JD.

mBio. 2011 Nov 8;2(6):e00248-11. doi: 10.1128/mBio.00248-11. Print 2011.


The haem-uptake gene cluster in Vibrio fischeri is regulated by Fur and contributes to symbiotic colonization.

Septer AN, Wang Y, Ruby EG, Stabb EV, Dunn AK.

Environ Microbiol. 2011 Nov;13(11):2855-64. doi: 10.1111/j.1462-2920.2011.02558.x. Epub 2011 Aug 30.


The lipid A from Vibrio fischeri lipopolysaccharide: a unique structure bearing a phosphoglycerol moiety.

Phillips NJ, Adin DM, Stabb EV, McFall-Ngai MJ, Apicella MA, Gibson BW.

J Biol Chem. 2011 Jun 17;286(24):21203-19. doi: 10.1074/jbc.M111.239475. Epub 2011 Apr 15.


Contribution of rapid evolution of the luxR-luxI intergenic region to the diverse bioluminescence outputs of Vibrio fischeri strains isolated from different environments.

Bose JL, Wollenberg MS, Colton DM, Mandel MJ, Septer AN, Dunn AK, Stabb EV.

Appl Environ Microbiol. 2011 Apr;77(7):2445-57. doi: 10.1128/AEM.02643-10. Epub 2011 Feb 11.


Bright mutants of Vibrio fischeri ES114 reveal conditions and regulators that control bioluminescence and expression of the lux operon.

Lyell NL, Dunn AK, Bose JL, Stabb EV.

J Bacteriol. 2010 Oct;192(19):5103-14. doi: 10.1128/JB.00524-10. Epub 2010 Aug 6.


The alternative oxidase (AOX) gene in Vibrio fischeri is controlled by NsrR and upregulated in response to nitric oxide.

Dunn AK, Karr EA, Wang Y, Batton AR, Ruby EG, Stabb EV.

Mol Microbiol. 2010 Jul 1;77(1):44-55. doi: 10.1111/j.1365-2958.2010.07194.x. Epub 2010 May 4.


FNR-mediated regulation of bioluminescence and anaerobic respiration in the light-organ symbiont Vibrio fischeri.

Septer AN, Bose JL, Dunn AK, Stabb EV.

FEMS Microbiol Lett. 2010 May;306(1):72-81. doi: 10.1111/j.1574-6968.2010.01938.x. Epub 2010 Feb 24.


Peptidoglycan induces loss of a nuclear peptidoglycan recognition protein during host tissue development in a beneficial animal-bacterial symbiosis.

Troll JV, Adin DM, Wier AM, Paquette N, Silverman N, Goldman WE, Stadermann FJ, Stabb EV, McFall-Ngai MJ.

Cell Microbiol. 2009 Jul;11(7):1114-27. doi: 10.1111/j.1462-5822.2009.01315.x. Epub 2009 Mar 12.


A single regulatory gene is sufficient to alter bacterial host range.

Mandel MJ, Wollenberg MS, Stabb EV, Visick KL, Ruby EG.

Nature. 2009 Mar 12;458(7235):215-8. doi: 10.1038/nature07660. Epub 2009 Feb 1.


Mutations in ampG and lytic transglycosylase genes affect the net release of peptidoglycan monomers from Vibrio fischeri.

Adin DM, Engle JT, Goldman WE, McFall-Ngai MJ, Stabb EV.

J Bacteriol. 2009 Apr;191(7):2012-22. doi: 10.1128/JB.01547-08. Epub 2008 Dec 12.


Effective mutagenesis of Vibrio fischeri by using hyperactive mini-Tn5 derivatives.

Lyell NL, Dunn AK, Bose JL, Vescovi SL, Stabb EV.

Appl Environ Microbiol. 2008 Nov;74(22):7059-63. doi: 10.1128/AEM.01330-08. Epub 2008 Sep 19.


Genetic analysis of trimethylamine N-oxide reductases in the light organ symbiont Vibrio fischeri ES114.

Dunn AK, Stabb EV.

J Bacteriol. 2008 Sep;190(17):5814-23. doi: 10.1128/JB.00227-08. Epub 2008 Jul 7.


Effects of luxCDABEG induction in Vibrio fischeri: enhancement of symbiotic colonization and conditional attenuation of growth in culture.

Bose JL, Rosenberg CS, Stabb EV.

Arch Microbiol. 2008 Aug;190(2):169-83. doi: 10.1007/s00203-008-0387-1. Epub 2008 Jun 3.


Identification of a cellobiose utilization gene cluster with cryptic beta-galactosidase activity in Vibrio fischeri.

Adin DM, Visick KL, Stabb EV.

Appl Environ Microbiol. 2008 Jul;74(13):4059-69. doi: 10.1128/AEM.00190-08. Epub 2008 May 16.


The twin arginine translocation system contributes to symbiotic colonization of Euprymna scolopes by Vibrio fischeri.

Dunn AK, Stabb EV.

FEMS Microbiol Lett. 2008 Feb;279(2):251-8. doi: 10.1111/j.1574-6968.2007.01043.x.


Characterization of htrB and msbB mutants of the light organ symbiont Vibrio fischeri.

Adin DM, Phillips NJ, Gibson BW, Apicella MA, Ruby EG, McFall-Ngai MJ, Hall DB, Stabb EV.

Appl Environ Microbiol. 2008 Feb;74(3):633-44. Epub 2007 Dec 7.


Bioluminescence in Vibrio fischeri is controlled by the redox-responsive regulator ArcA.

Bose JL, Kim U, Bartkowski W, Gunsalus RP, Overley AM, Lyell NL, Visick KL, Stabb EV.

Mol Microbiol. 2007 Jul;65(2):538-53. Epub 2007 Jun 21.


Beyond quorum sensing: the complexities of prokaryotic parliamentary procedures.

Dunn AK, Stabb EV.

Anal Bioanal Chem. 2007 Jan;387(2):391-8. Epub 2006 Sep 5. Review.


Breaching the great wall: peptidoglycan and microbial interactions.

Cloud-Hansen KA, Peterson SB, Stabb EV, Goldman WE, McFall-Ngai MJ, Handelsman J.

Nat Rev Microbiol. 2006 Sep;4(9):710-6. Epub 2006 Aug 7. Review.


New rfp- and pES213-derived tools for analyzing symbiotic Vibrio fischeri reveal patterns of infection and lux expression in situ.

Dunn AK, Millikan DS, Adin DM, Bose JL, Stabb EV.

Appl Environ Microbiol. 2006 Jan;72(1):802-10.


Characterization of pES213, a small mobilizable plasmid from Vibrio fischeri.

Dunn AK, Martin MO, Stabb EV.

Plasmid. 2005 Sep;54(2):114-34. Epub 2005 Mar 2.


Localization and bacteriostasis of Vibrio introduced into the Pacific white shrimp, Litopenaeus vannamei.

Burgents JE, Burnett LE, Stabb EV, Burnett KG.

Dev Comp Immunol. 2005;29(8):681-91. Epub 2005 Feb 24.


Microbial factor-mediated development in a host-bacterial mutualism.

Koropatnick TA, Engle JT, Apicella MA, Stabb EV, Goldman WE, McFall-Ngai MJ.

Science. 2004 Nov 12;306(5699):1186-8.

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