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Items: 12

1.

Message-passing neural networks for high-throughput polymer screening.

St John PC, Phillips C, Kemper TW, Wilson AN, Guan Y, Crowley MF, Nimlos MR, Larsen RE.

J Chem Phys. 2019 Jun 21;150(23):234111. doi: 10.1063/1.5099132.

PMID:
31228909
2.

Approaches to Computational Strain Design in the Multiomics Era.

St John PC, Bomble YJ.

Front Microbiol. 2019 Apr 5;10:597. doi: 10.3389/fmicb.2019.00597. eCollection 2019.

3.

Prediction of reaction knockouts to maximize succinate production by Actinobacillus succinogenes.

Nag A, St John PC, Crowley MF, Bomble YJ.

PLoS One. 2018 Jan 30;13(1):e0189144. doi: 10.1371/journal.pone.0189144. eCollection 2018.

4.

Metabolic Engineering of Actinobacillus succinogenes Provides Insights into Succinic Acid Biosynthesis.

Guarnieri MT, Chou YC, SalvachĂșa D, Mohagheghi A, St John PC, Peterson DJ, Bomble YJ, Beckham GT.

Appl Environ Microbiol. 2017 Aug 17;83(17). pii: e00996-17. doi: 10.1128/AEM.00996-17. Print 2017 Sep 1.

5.

Efficient estimation of the maximum metabolic productivity of batch systems.

St John PC, Crowley MF, Bomble YJ.

Biotechnol Biofuels. 2017 Jan 31;10:28. doi: 10.1186/s13068-017-0709-0. eCollection 2017.

6.

Succinic acid production from lignocellulosic hydrolysate by Basfia succiniciproducens.

SalvachĂșa D, Smith H, St John PC, Mohagheghi A, Peterson DJ, Black BA, Dowe N, Beckham GT.

Bioresour Technol. 2016 Aug;214:558-566. doi: 10.1016/j.biortech.2016.05.018. Epub 2016 May 9.

PMID:
27179951
7.

Functional network inference of the suprachiasmatic nucleus.

Abel JH, Meeker K, Granados-Fuentes D, St John PC, Wang TJ, Bales BB, Doyle FJ 3rd, Herzog ED, Petzold LR.

Proc Natl Acad Sci U S A. 2016 Apr 19;113(16):4512-7. doi: 10.1073/pnas.1521178113. Epub 2016 Apr 4. Erratum in: Proc Natl Acad Sci U S A. 2017 Oct 23;:. Proc Natl Acad Sci U S A. 2017 Oct 31;114(44):E9428-E9430.

8.

Quantifying Stochastic Noise in Cultured Circadian Reporter Cells.

St John PC, Doyle FJ 3rd.

PLoS Comput Biol. 2015 Nov 20;11(11):e1004451. doi: 10.1371/journal.pcbi.1004451. eCollection 2015 Nov.

9.

Amplitude metrics for cellular circadian bioluminescence reporters.

St John PC, Taylor SR, Abel JH, Doyle FJ 3rd.

Biophys J. 2014 Dec 2;107(11):2712-22. doi: 10.1016/j.bpj.2014.10.026. Epub 2014 Dec 2.

10.

Spatiotemporal separation of PER and CRY posttranslational regulation in the mammalian circadian clock.

St John PC, Hirota T, Kay SA, Doyle FJ 3rd.

Proc Natl Acad Sci U S A. 2014 Feb 4;111(5):2040-5. doi: 10.1073/pnas.1323618111. Epub 2014 Jan 21.

11.

Estimating confidence intervals in predicted responses for oscillatory biological models.

St John PC, Doyle FJ 3rd.

BMC Syst Biol. 2013 Jul 29;7:71. doi: 10.1186/1752-0509-7-71.

12.

Identification of small molecule activators of cryptochrome.

Hirota T, Lee JW, St John PC, Sawa M, Iwaisako K, Noguchi T, Pongsawakul PY, Sonntag T, Welsh DK, Brenner DA, Doyle FJ 3rd, Schultz PG, Kay SA.

Science. 2012 Aug 31;337(6098):1094-7. doi: 10.1126/science.1223710. Epub 2012 Jul 12.

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