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Items: 1 to 50 of 165

1.

Determination of the Gene Regulatory Network of a Genome-Reduced Bacterium Highlights Alternative Regulation Independent of Transcription Factors.

Yus E, Lloréns-Rico V, Martínez S, Gallo C, Eilers H, Blötz C, Stülke J, Lluch-Senar M, Serrano L.

Cell Syst. 2019 Aug 28;9(2):143-158.e13. doi: 10.1016/j.cels.2019.07.001. Epub 2019 Aug 21.

2.

Sustained sensing in potassium homeostasis: Cyclic di-AMP controls potassium uptake by KimA at the levels of expression and activity.

Gundlach J, Krüger L, Herzberg C, Turdiev A, Poehlein A, Tascón I, Weiss M, Hertel D, Daniel R, Hänelt I, Lee VT, Stülke J.

J Biol Chem. 2019 Jun 14;294(24):9605-9614. doi: 10.1074/jbc.RA119.008774. Epub 2019 May 6.

PMID:
31061098
3.

Topoisomerase IV can functionally replace all type 1A topoisomerases in Bacillus subtilis.

Reuß DR, Faßhauer P, Mroch PJ, Ul-Haq I, Koo BM, Pöhlein A, Gross CA, Daniel R, Brantl S, Stülke J.

Nucleic Acids Res. 2019 Jun 4;47(10):5231-5242. doi: 10.1093/nar/gkz260.

4.

The KupA and KupB Proteins of Lactococcus lactis IL1403 Are Novel c-di-AMP Receptor Proteins Responsible for Potassium Uptake.

Quintana IM, Gibhardt J, Turdiev A, Hammer E, Commichau FM, Lee VT, Magni C, Stülke J.

J Bacteriol. 2019 Apr 24;201(10). pii: e00028-19. doi: 10.1128/JB.00028-19. Print 2019 May 15.

PMID:
30745376
5.

Recent Advances and Current Trends in Nucleotide Second Messenger Signaling in Bacteria.

Hengge R, Häussler S, Pruteanu M, Stülke J, Tschowri N, Turgay K.

J Mol Biol. 2019 Mar 1;431(5):908-927. doi: 10.1016/j.jmb.2019.01.014. Epub 2019 Jan 19.

PMID:
30668970
6.

Less Is More: Toward a Genome-Reduced Bacillus Cell Factory for "Difficult Proteins".

Aguilar Suárez R, Stülke J, van Dijl JM.

ACS Synth Biol. 2019 Jan 18;8(1):99-108. doi: 10.1021/acssynbio.8b00342. Epub 2018 Dec 27.

7.

The DEAD-Box RNA Helicases of Bacillus subtilis as a Model to Evaluate Genetic Compensation Among Duplicate Genes.

González-Gutiérrez JA, Díaz-Jiménez DF, Vargas-Pérez I, Guillén-Solís G, Stülke J, Olmedo-Álvarez G.

Front Microbiol. 2018 Sep 25;9:2261. doi: 10.3389/fmicb.2018.02261. eCollection 2018.

8.

Genetic Engineering of Lactococcus lactis Co-producing Antigen and the Mucosal Adjuvant 3' 5'- cyclic di Adenosine Monophosphate (c-di-AMP) as a Design Strategy to Develop a Mucosal Vaccine Prototype.

Quintana I, Espariz M, Villar SR, González FB, Pacini MF, Cabrera G, Bontempi I, Prochetto E, Stülke J, Perez AR, Marcipar I, Blancato V, Magni C.

Front Microbiol. 2018 Sep 4;9:2100. doi: 10.3389/fmicb.2018.02100. eCollection 2018.

9.

Development of a replicating plasmid based on the native oriC in Mycoplasma pneumoniae.

Blötz C, Lartigue C, Valverde Timana Y, Ruiz E, Paetzold B, Busse J, Stülke J.

Microbiology. 2018 Nov;164(11):1372-1382. doi: 10.1099/mic.0.000711. Epub 2018 Sep 25.

PMID:
30252643
10.

Making and Breaking of an Essential Poison: the Cyclases and Phosphodiesterases That Produce and Degrade the Essential Second Messenger Cyclic di-AMP in Bacteria.

Commichau FM, Heidemann JL, Ficner R, Stülke J.

J Bacteriol. 2018 Dec 7;201(1). pii: e00462-18. doi: 10.1128/JB.00462-18. Print 2019 Jan 1. Review.

11.

Selective Pressure for Biofilm Formation in Bacillus subtilis: Differential Effect of Mutations in the Master Regulator SinR on Bistability.

Kampf J, Gerwig J, Kruse K, Cleverley R, Dormeyer M, Grünberger A, Kohlheyer D, Commichau FM, Lewis RJ, Stülke J.

MBio. 2018 Sep 4;9(5). pii: e01464-18. doi: 10.1128/mBio.01464-18.

12.

SubtiWiki in 2018: from genes and proteins to functional network annotation of the model organism Bacillus subtilis.

Zhu B, Stülke J.

Nucleic Acids Res. 2018 Jan 4;46(D1):D743-D748. doi: 10.1093/nar/gkx908.

13.
14.

Structural basis for the regulatory interaction of the methylglyoxal synthase MgsA with the carbon flux regulator Crh in Bacillus subtilis.

Dickmanns A, Zschiedrich CP, Arens J, Parfentev I, Gundlach J, Hofele R, Neumann P, Urlaub H, Görke B, Ficner R, Stülke J.

J Biol Chem. 2018 Apr 20;293(16):5781-5792. doi: 10.1074/jbc.RA117.001289. Epub 2018 Mar 7.

15.

Changes of DNA topology affect the global transcription landscape and allow rapid growth of a Bacillus subtilis mutant lacking carbon catabolite repression.

Reuß DR, Rath H, Thürmer A, Benda M, Daniel R, Völker U, Mäder U, Commichau FM, Stülke J.

Metab Eng. 2018 Jan;45:171-179. doi: 10.1016/j.ymben.2017.12.004. Epub 2017 Dec 11.

PMID:
29242163
16.

A Delicate Connection: c-di-AMP Affects Cell Integrity by Controlling Osmolyte Transport.

Commichau FM, Gibhardt J, Halbedel S, Gundlach J, Stülke J.

Trends Microbiol. 2018 Mar;26(3):175-185. doi: 10.1016/j.tim.2017.09.003. Epub 2017 Sep 28. Review.

PMID:
28965724
17.

Glycerol metabolism and its implication in virulence in Mycoplasma.

Blötz C, Stülke J.

FEMS Microbiol Rev. 2017 Sep 1;41(5):640-652. doi: 10.1093/femsre/fux033. Review.

PMID:
28961963
18.

Identification of c-di-AMP-Binding Proteins Using Magnetic Beads.

Kampf J, Gundlach J, Herzberg C, Treffon K, Stülke J.

Methods Mol Biol. 2017;1657:347-359. doi: 10.1007/978-1-4939-7240-1_27.

PMID:
28889307
19.

Erratum to: Of ions and messengers: an intricate link between potassium, glutamate, and cyclic di-AMP.

Gundlach J, Commichau FM, Stülke J.

Curr Genet. 2018 Feb;64(1):197. doi: 10.1007/s00294-017-0745-0.

PMID:
28884192
20.

Perspective of ions and messengers: an intricate link between potassium, glutamate, and cyclic di-AMP.

Gundlach J, Commichau FM, Stülke J.

Curr Genet. 2018 Feb;64(1):191-195. doi: 10.1007/s00294-017-0734-3. Epub 2017 Aug 20. Review. Erratum in: Curr Genet. 2017 Sep 7;:.

PMID:
28825218
21.

The contribution of bacterial genome engineering to sustainable development.

Reuß DR, Commichau FM, Stülke J.

Microb Biotechnol. 2017 Sep;10(5):1259-1263. doi: 10.1111/1751-7915.12784. Epub 2017 Aug 3.

22.

Identification of the Components Involved in Cyclic Di-AMP Signaling in Mycoplasma pneumoniae.

Blötz C, Treffon K, Kaever V, Schwede F, Hammer E, Stülke J.

Front Microbiol. 2017 Jul 13;8:1328. doi: 10.3389/fmicb.2017.01328. eCollection 2017.

23.

Adaptation of Bacillus subtilis to Life at Extreme Potassium Limitation.

Gundlach J, Herzberg C, Hertel D, Thürmer A, Daniel R, Link H, Stülke J.

MBio. 2017 Jul 5;8(4). pii: e00861-17. doi: 10.1128/mBio.00861-17.

24.

The Highly Conserved Asp23 Family Protein YqhY Plays a Role in Lipid Biosynthesis in Bacillus subtilis.

Tödter D, Gunka K, Stülke J.

Front Microbiol. 2017 May 19;8:883. doi: 10.3389/fmicb.2017.00883. eCollection 2017.

25.

Control of potassium homeostasis is an essential function of the second messenger cyclic di-AMP in Bacillus subtilis.

Gundlach J, Herzberg C, Kaever V, Gunka K, Hoffmann T, Weiß M, Gibhardt J, Thürmer A, Hertel D, Daniel R, Bremer E, Commichau FM, Stülke J.

Sci Signal. 2017 Apr 18;10(475). pii: eaal3011. doi: 10.1126/scisignal.aal3011.

PMID:
28420751
26.

Cyclic-di-GMP signalling meets extracellular polysaccharide synthesis in Bacillus subtilis.

Kampf J, Stülke J.

Environ Microbiol Rep. 2017 Jun;9(3):182-185. doi: 10.1111/1758-2229.12530. Epub 2017 Apr 3.

PMID:
28296273
27.

Hierarchical mutational events compensate for glutamate auxotrophy of a Bacillus subtilis gltC mutant.

Dormeyer M, Lübke AL, Müller P, Lentes S, Reuß DR, Thürmer A, Stülke J, Daniel R, Brantl S, Commichau FM.

Environ Microbiol Rep. 2017 Jun;9(3):279-289. doi: 10.1111/1758-2229.12531. Epub 2017 Apr 3.

PMID:
28294562
28.

Large-scale reduction of the Bacillus subtilis genome: consequences for the transcriptional network, resource allocation, and metabolism.

Reuß DR, Altenbuchner J, Mäder U, Rath H, Ischebeck T, Sappa PK, Thürmer A, Guérin C, Nicolas P, Steil L, Zhu B, Feussner I, Klumpp S, Daniel R, Commichau FM, Völker U, Stülke J.

Genome Res. 2017 Feb;27(2):289-299. doi: 10.1101/gr.215293.116. Epub 2016 Dec 13.

29.

Localization of Components of the RNA-Degrading Machine in Bacillus subtilis.

Cascante-Estepa N, Gunka K, Stülke J.

Front Microbiol. 2016 Sep 21;7:1492. eCollection 2016.

30.

The Blueprint of a Minimal Cell: MiniBacillus.

Reuß DR, Commichau FM, Gundlach J, Zhu B, Stülke J.

Microbiol Mol Biol Rev. 2016 Sep 28;80(4):955-987. Print 2016 Dec. Review.

31.

Complete Genome Sequence of Bacillus subtilis subsp. subtilis Strain ∆6.

Reuß DR, Thürmer A, Daniel R, Quax WJ, Stülke J.

Genome Announc. 2016 Jul 28;4(4). pii: e00759-16. doi: 10.1128/genomeA.00759-16.

32.

ThrR, a DNA-binding transcription factor involved in controlling threonine biosynthesis in Bacillus subtilis.

Rosenberg J, Müller P, Lentes S, Thiele MJ, Zeigler DR, Tödter D, Paulus H, Brantl S, Stülke J, Commichau FM.

Mol Microbiol. 2016 Sep;101(5):879-93. doi: 10.1111/mmi.13429. Epub 2016 Jun 27.

33.

Second Messenger Signaling in Bacillus subtilis: Accumulation of Cyclic di-AMP Inhibits Biofilm Formation.

Gundlach J, Rath H, Herzberg C, Mäder U, Stülke J.

Front Microbiol. 2016 May 25;7:804. doi: 10.3389/fmicb.2016.00804. eCollection 2016.

34.

Hydrogen sulfide is a novel potential virulence factor of Mycoplasma pneumoniae: characterization of the unusual cysteine desulfurase/desulfhydrase HapE.

Großhennig S, Ischebeck T, Gibhardt J, Busse J, Feussner I, Stülke J.

Mol Microbiol. 2016 Apr;100(1):42-54. doi: 10.1111/mmi.13300. Epub 2016 Feb 9.

35.

SubtiWiki 2.0--an integrated database for the model organism Bacillus subtilis.

Michna RH, Zhu B, Mäder U, Stülke J.

Nucleic Acids Res. 2016 Jan 4;44(D1):D654-62. doi: 10.1093/nar/gkv1006. Epub 2015 Oct 3.

36.

Trigger Enzymes: Coordination of Metabolism and Virulence Gene Expression.

Commichau FM, Stülke J.

Microbiol Spectr. 2015 Aug;3(4). doi: 10.1128/microbiolspec.MBP-0010-2014. Review.

PMID:
26350309
37.

The phosphoenolpyruvate:sugar phosphotransferase system is involved in sensitivity to the glucosylated bacteriocin sublancin.

Garcia De Gonzalo CV, Denham EL, Mars RA, Stülke J, van der Donk WA, van Dijl JM.

Antimicrob Agents Chemother. 2015 Nov;59(11):6844-54. doi: 10.1128/AAC.01519-15. Epub 2015 Aug 17.

38.

An Essential Poison: Synthesis and Degradation of Cyclic Di-AMP in Bacillus subtilis.

Gundlach J, Mehne FM, Herzberg C, Kampf J, Valerius O, Kaever V, Stülke J.

J Bacteriol. 2015 Oct;197(20):3265-74. doi: 10.1128/JB.00564-15. Epub 2015 Aug 3.

39.

Minor Cause--Major Effect: A Novel Mode of Control of Bistable Gene Expression.

Kampf J, Stülke J.

PLoS Genet. 2015 Jun 25;11(6):e1005229. doi: 10.1371/journal.pgen.1005229. eCollection 2015 Jun. No abstract available.

40.

Regulatory potential of post-translational modifications in bacteria.

Grangeasse C, Stülke J, Mijakovic I.

Front Microbiol. 2015 May 28;6:500. doi: 10.3389/fmicb.2015.00500. eCollection 2015. No abstract available.

41.

A jack of all trades: the multiple roles of the unique essential second messenger cyclic di-AMP.

Commichau FM, Dickmanns A, Gundlach J, Ficner R, Stülke J.

Mol Microbiol. 2015 Jul;97(2):189-204. doi: 10.1111/mmi.13026. Epub 2015 May 9. Review.

42.

Defining a minimal cell: essentiality of small ORFs and ncRNAs in a genome-reduced bacterium.

Lluch-Senar M, Delgado J, Chen WH, Lloréns-Rico V, O'Reilly FJ, Wodke JA, Unal EB, Yus E, Martínez S, Nichols RJ, Ferrar T, Vivancos A, Schmeisky A, Stülke J, van Noort V, Gavin AC, Bork P, Serrano L.

Mol Syst Biol. 2015 Jan 21;11(1):780. doi: 10.15252/msb.20145558.

43.

Structural and biochemical analysis of the essential diadenylate cyclase CdaA from Listeria monocytogenes.

Rosenberg J, Dickmanns A, Neumann P, Gunka K, Arens J, Kaever V, Stülke J, Ficner R, Commichau FM.

J Biol Chem. 2015 Mar 6;290(10):6596-606. doi: 10.1074/jbc.M114.630418. Epub 2015 Jan 20.

44.

Far from being well understood: multiple protein phosphorylation events control cell differentiation in Bacillus subtilis at different levels.

Gerwig J, Stülke J.

Front Microbiol. 2014 Dec 10;5:704. doi: 10.3389/fmicb.2014.00704. eCollection 2014. No abstract available.

45.

Identification, characterization, and structure analysis of the cyclic di-AMP-binding PII-like signal transduction protein DarA.

Gundlach J, Dickmanns A, Schröder-Tittmann K, Neumann P, Kaesler J, Kampf J, Herzberg C, Hammer E, Schwede F, Kaever V, Tittmann K, Stülke J, Ficner R.

J Biol Chem. 2015 Jan 30;290(5):3069-80. doi: 10.1074/jbc.M114.619619. Epub 2014 Nov 28.

46.

Caught in the act: RNA-Seq provides novel insights into mRNA degradation.

Gerwig J, Stülke J.

Mol Microbiol. 2014 Oct;94(1):5-8. doi: 10.1111/mmi.12769. Epub 2014 Sep 4.

47.

Mycoplasma pneumoniae thymidine phosphorylase.

Wang L, Schmidl SR, Stülke J.

Nucleosides Nucleotides Nucleic Acids. 2014;33(4-6):296-304. doi: 10.1080/15257770.2013.853783.

PMID:
24940683
48.

Control of the diadenylate cyclase CdaS in Bacillus subtilis: an autoinhibitory domain limits cyclic di-AMP production.

Mehne FM, Schröder-Tittmann K, Eijlander RT, Herzberg C, Hewitt L, Kaever V, Lewis RJ, Kuipers OP, Tittmann K, Stülke J.

J Biol Chem. 2014 Jul 25;289(30):21098-107. doi: 10.1074/jbc.M114.562066. Epub 2014 Jun 16.

49.

Impact of Hfq on the Bacillus subtilis transcriptome.

Hämmerle H, Amman F, Večerek B, Stülke J, Hofacker I, Bläsi U.

PLoS One. 2014 Jun 16;9(6):e98661. doi: 10.1371/journal.pone.0098661. eCollection 2014.

50.

Adaptation of Bacillus subtilis carbon core metabolism to simultaneous nutrient limitation and osmotic challenge: a multi-omics perspective.

Kohlstedt M, Sappa PK, Meyer H, Maaß S, Zaprasis A, Hoffmann T, Becker J, Steil L, Hecker M, van Dijl JM, Lalk M, Mäder U, Stülke J, Bremer E, Völker U, Wittmann C.

Environ Microbiol. 2014 Jun;16(6):1898-917. doi: 10.1111/1462-2920.12438. Epub 2014 Mar 31.

PMID:
24571712

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