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Items: 1 to 50 of 73

1.

Novel methods for integration and visualization of genomics and genetics data in Alzheimer's disease.

Bihlmeyer NA, Merrill E, Lambert Y, Srivastava GP, Clark TW, Hyman BT, Das S.

Alzheimers Dement. 2019 Jun;15(6):788-798. doi: 10.1016/j.jalz.2019.01.011. Epub 2019 Mar 29.

2.

Anisotropic Thermal Conduction in Transition Metal Dichalcogenide Nanocomposites with Rough Interfaces.

Thomas IO, Srivastava GP.

Nanomaterials (Basel). 2018 Dec 15;8(12). pii: E1054. doi: 10.3390/nano8121054.

3.

Mode confinement, interface mass-smudging, and sample length effects on phonon transport in thin nanocomposite superlattices.

Srivastava GP, Thomas IO.

J Phys Condens Matter. 2019 Feb 6;31(5):055303. doi: 10.1088/1361-648X/aaf4c4. Epub 2018 Nov 29.

PMID:
30523937
4.

Anharmonic, dimensionality and size effects in phonon transport.

Thomas IO, Srivastava GP.

J Phys Condens Matter. 2017 Dec 20;29(50):505703. doi: 10.1088/1361-648X/aa995e.

PMID:
29120345
5.

Water-deficit-induced changes in transcription factor expression in maize seedlings.

Seeve CM, Cho IJ, Hearne LB, Srivastava GP, Joshi T, Smith DO, Sharp RE, Oliver MJ.

Plant Cell Environ. 2017 May;40(5):686-701. doi: 10.1111/pce.12891. Epub 2017 Jan 20.

PMID:
28039925
6.

The Role of MAPT Haplotype H2 and Isoform 1N/4R in Parkinsonism of Older Adults.

Valenca GT, Srivastava GP, Oliveira-Filho J, White CC, Yu L, Schneider JA, Buchman AS, Shulman JM, Bennett DA, De Jager PL.

PLoS One. 2016 Jul 26;11(7):e0157452. doi: 10.1371/journal.pone.0157452. eCollection 2016.

7.

Size and dimensionality dependent phonon conductivity in nanocomposites.

Al-Otaibi J, Srivastava GP.

J Phys Condens Matter. 2016 Apr 13;28(14):145304. doi: 10.1088/0953-8984/28/14/145304. Epub 2016 Mar 14.

PMID:
26974428
8.

Three-phonon scattering processes and thermal conductivity in IV-chalocogenides.

Al-Otaibi J, Srivastava GP.

J Phys Condens Matter. 2015 Aug 26;27(33):335801. doi: 10.1088/0953-8984/27/33/335801. Epub 2015 Aug 4.

PMID:
26241689
9.

Association of DNA methylation in the brain with age in older persons is confounded by common neuropathologies.

Yang J, Yu L, Gaiteri C, Srivastava GP, Chibnik LB, Leurgans SE, Schneider JA, Meissner A, De Jager PL, Bennett DA.

Int J Biochem Cell Biol. 2015 Oct;67:58-64. doi: 10.1016/j.biocel.2015.05.009. Epub 2015 May 21.

10.

PRIMEGENSw3: a web-based tool for high-throughput primer and probe design.

Kushwaha G, Srivastava GP, Xu D.

Methods Mol Biol. 2015;1275:181-99. doi: 10.1007/978-1-4939-2365-6_14.

PMID:
25697661
11.

Tuning phonon properties in thermoelectric materials.

Srivastava GP.

Rep Prog Phys. 2015 Feb;78(2):026501. doi: 10.1088/0034-4885/78/2/026501. Epub 2015 Jan 13.

PMID:
25583032
12.

24-hour rhythms of DNA methylation and their relation with rhythms of RNA expression in the human dorsolateral prefrontal cortex.

Lim AS, Srivastava GP, Yu L, Chibnik LB, Xu J, Buchman AS, Schneider JA, Myers AJ, Bennett DA, De Jager PL.

PLoS Genet. 2014 Nov 6;10(11):e1004792. doi: 10.1371/journal.pgen.1004792. eCollection 2014 Nov.

13.

Association of Brain DNA methylation in SORL1, ABCA7, HLA-DRB5, SLC24A4, and BIN1 with pathological diagnosis of Alzheimer disease.

Yu L, Chibnik LB, Srivastava GP, Pochet N, Yang J, Xu J, Kozubek J, Obholzer N, Leurgans SE, Schneider JA, Meissner A, De Jager PL, Bennett DA.

JAMA Neurol. 2015 Jan;72(1):15-24. doi: 10.1001/jamaneurol.2014.3049.

14.

Epigenomics of Alzheimer's disease.

Bennett DA, Yu L, Yang J, Srivastava GP, Aubin C, De Jager PL.

Transl Res. 2015 Jan;165(1):200-20. doi: 10.1016/j.trsl.2014.05.006. Epub 2014 May 16. Review.

15.

Polarization of the effects of autoimmune and neurodegenerative risk alleles in leukocytes.

Raj T, Rothamel K, Mostafavi S, Ye C, Lee MN, Replogle JM, Feng T, Lee M, Asinovski N, Frohlich I, Imboywa S, Von Korff A, Okada Y, Patsopoulos NA, Davis S, McCabe C, Paik HI, Srivastava GP, Raychaudhuri S, Hafler DA, Koller D, Regev A, Hacohen N, Mathis D, Benoist C, Stranger BE, De Jager PL.

Science. 2014 May 2;344(6183):519-23. doi: 10.1126/science.1249547.

16.

Observation of T₂-like coherent optical phonons in epitaxial Ge₂Sb₂Te₅/GaSb(001) films.

Shalini A, Liu Y, Al-Jarah UA, Srivastava GP, Wright CD, Katmis F, Braun W, Hicken RJ.

Sci Rep. 2013 Oct 16;3:2965. doi: 10.1038/srep02965.

17.

Ab initio investigation of the electronic properties of graphene on InAs(111)A.

Yelgel C, Srivastava GP, Miwa RH.

J Phys Condens Matter. 2012 Dec 5;24(48):485004. doi: 10.1088/0953-8984/24/48/485004. Epub 2012 Oct 26.

PMID:
23100453
18.

Electrons, phonons and superconductivity in rocksalt and tungsten-carbide phases of CrC.

Tütüncü HM, Baǧcı S, Srivastava GP, Akbulut A.

J Phys Condens Matter. 2012 Nov 14;24(45):455704. doi: 10.1088/0953-8984/24/45/455704. Epub 2012 Oct 23.

PMID:
23092975
19.

A 17q12 allele is associated with altered NK cell subsets and function.

Xia Z, Liu Q, Berger CT, Keenan BT, Kaliszewska A, Cheney PC, Srivastava GP, Castillo IW, De Jager PL, Alter G.

J Immunol. 2012 Apr 1;188(7):3315-22. doi: 10.4049/jimmunol.1102775. Epub 2012 Feb 15.

20.

Templating an organic array with Si(111)-7×7.

Weymouth AJ, Miwa RH, Edge GJ, Srivastava GP, McLean AB.

Chem Commun (Camb). 2011 Jul 28;47(28):8031-3. doi: 10.1039/c1cc12311d. Epub 2011 Jun 10.

PMID:
21666898
21.

Homolog-specific PCR primer design for profiling splice variants.

Srivastava GP, Hanumappa M, Kushwaha G, Nguyen HT, Xu D.

Nucleic Acids Res. 2011 May;39(10):e69. doi: 10.1093/nar/gkr127. Epub 2011 Mar 16.

22.

Identification of transcription factor's targets using tissue-specific transcriptomic data in Arabidopsis thaliana.

Srivastava GP, Li P, Liu J, Xu D.

BMC Syst Biol. 2010 Sep 13;4 Suppl 2:S2. doi: 10.1186/1752-0509-4-S2-S2.

23.

Genome-wide functional annotation by integrating multiple microarray datasets using meta-analysis.

Srivastava GP, Qiu J, Xu D.

Int J Data Min Bioinform. 2010;4(4):357-76.

PMID:
20815137
24.

Gradual changes in electronic properties from graphene to graphite: first-principles calculations.

Alzahrani AZ, Srivastava GP.

J Phys Condens Matter. 2009 Dec 2;21(49):495503. doi: 10.1088/0953-8984/21/49/495503. Epub 2009 Nov 13.

PMID:
21836199
25.

An ab initio study of electronic and structural properties of Mn in a GaAs environment.

Alzahrani AZ, Srivastava GP, Garg R, Migliorato MA.

J Phys Condens Matter. 2009 Dec 2;21(48):485504. doi: 10.1088/0953-8984/21/48/485504. Epub 2009 Nov 11.

PMID:
21832523
26.

Quantitative study of the enhancement of the thermal conductivity of AlN ceramics by nanoscale processing.

Alshaikhi A, Srivastava GP.

J Phys Condens Matter. 2009 Apr 29;21(17):174207. doi: 10.1088/0953-8984/21/17/174207. Epub 2009 Apr 1.

PMID:
21825411
27.

The anharmonic phonon decay rate in group-III nitrides.

Srivastava GP.

J Phys Condens Matter. 2009 Apr 29;21(17):174205. doi: 10.1088/0953-8984/21/17/174205. Epub 2009 Apr 1.

PMID:
21825409
28.

Hypersonic modes in nanophononic semiconductors.

Hepplestone SP, Srivastava GP.

Phys Rev Lett. 2008 Sep 5;101(10):105502. Epub 2008 Sep 3.

PMID:
18851224
29.

A link between SIN1 (MAPKAP1) and poly(rC) binding protein 2 (PCBP2) in counteracting environmental stress.

Ghosh D, Srivastava GP, Xu D, Schulz LC, Roberts RM.

Proc Natl Acad Sci U S A. 2008 Aug 19;105(33):11673-8. doi: 10.1073/pnas.0803182105. Epub 2008 Aug 7.

30.

PRIMEGENS-v2: genome-wide primer design for analyzing DNA methylation patterns of CpG islands.

Srivastava GP, Guo J, Shi H, Xu D.

Bioinformatics. 2008 Sep 1;24(17):1837-42. doi: 10.1093/bioinformatics/btn320. Epub 2008 Jun 25.

PMID:
18579568
31.

Quenching of local magnetic moment in oxygen adsorbed graphene nanoribbons.

Veiga RG, Miwa RH, Srivastava GP.

J Chem Phys. 2008 May 28;128(20):201101. doi: 10.1063/1.2937453.

PMID:
18513000
32.

Genome-scale probe and primer design with PRIMEGENS.

Srivastava GP, Xu D.

Methods Mol Biol. 2007;402:159-76. Review.

PMID:
17951795
33.

Wingless directly represses DPP morphogen expression via an armadillo/TCF/Brinker complex.

Theisen H, Syed A, Nguyen BT, Lukacsovich T, Purcell J, Srivastava GP, Iron D, Gaudenz K, Nie Q, Wan FY, Waterman ML, Marsh JL.

PLoS One. 2007 Jan 3;2(1):e142.

34.

Reply to Comment on 'Bi nanolines on Si(001): registry with the substrate'.

Miwa RH, MacLeod JM, McLean AB, Srivastava GP.

Nanotechnology. 2006 Mar 28;17(6):1803-5. doi: 10.1088/0957-4484/17/6/N02. Epub 2006 Mar 3.

PMID:
26558598
35.

Ab initio surface reaction energetics of SiH4 and Si2H6 on Si(001)-(2 x 2).

Smardon RD, Srivastava GP.

J Chem Phys. 2005 Nov 1;123(17):174703.

PMID:
16375553
36.

Maleic anhydride adsorption on silicon (001).

Miotto R, Ferraz AC, Srivastava GP.

J Chem Phys. 2005 Aug 15;123(7):074708.

PMID:
16229611
37.

The equilibrium geometry and electronic structure of Bi nanolines on clean and hydrogenated Si(001) surfaces.

Miwa RH, Macleod JM, McLean AB, Srivastava GP.

Nanotechnology. 2005 Oct;16(10):2427-35. doi: 10.1088/0957-4484/16/10/073. Epub 2005 Sep 2.

PMID:
20818030
38.

ArrayD: a general purpose software for microarray design.

Sharma A, Srivastava GP, Sharma VK, Ramachandran S.

BMC Bioinformatics. 2004 Oct 2;5:142.

39.

Microscopic calculation of valence-band states in semiconductor structures in the presence of a magnetic field.

Tan W, Inkson JC, Srivastava GP.

Phys Rev B Condens Matter. 1996 Nov 15;54(20):14623-14632. No abstract available.

PMID:
9985470
40.

Surface phonons on InP(110) with the adiabatic bond-charge model.

Tütünc HM, Srivastava GP.

Phys Rev B Condens Matter. 1996 Jun 15;53(23):15675-15681. No abstract available.

PMID:
9983402
41.

Atomic geometry and bonding on the GaAs(001)- beta 2(2 x 4) surface from ab initio pseudopotential calculations.

Srivastava GP, Jenkins SJ.

Phys Rev B Condens Matter. 1996 May 15;53(19):12589-12592. No abstract available.

PMID:
9982918
42.

Optical properties of twinning superlattices in diamond-type and zinc-blende-type semiconductors.

Ikonic Z, Srivastava GP, Inkson JC.

Phys Rev B Condens Matter. 1995 Nov 15;52(19):14078-14085. No abstract available.

PMID:
9980625
43.

Electronic properties of (111) twin boundaries and twinning superlattices in lead sulfide.

Ikonic Z, Srivastava GP, Inkson JC.

Phys Rev B Condens Matter. 1995 Nov 15;52(19):13734-13737. No abstract available.

PMID:
9980576
44.

Erratum: Geometry and electronic band structure of an ordered monolayer deposition of Bi on III-V(110) semiconductor surfaces

Umerski A, Srivastava GP.

Phys Rev B Condens Matter. 1995 Oct 15;52(15):11519. No abstract available.

PMID:
9980263
45.

Electronic structure of (GaAs)m(AlAs)n superlattices grown in the

Ikonic Z, Srivastava GP, Inkson JC.

Phys Rev B Condens Matter. 1995 Sep 15;52(11):7830-7833. No abstract available.

PMID:
9979765
46.

III-V(110) surface dynamics from an ab initio frozen-phonon approach.

Schmidt WG, Bechstedt F, Srivastava GP.

Phys Rev B Condens Matter. 1995 Jul 15;52(3):2001-2007. No abstract available.

PMID:
9981269
47.

Direct optical transitions in indirect semiconductors: The case of Ge twinning superlattices.

Ikonic Z, Srivastava GP, Inkson JC.

Phys Rev B Condens Matter. 1995 Jul 15;52(3):1474-1476. No abstract available.

PMID:
9981198
48.

Geometry and electronic band structure of an ordered monolayer deposition of Bi on III-V(110) semiconductor surfaces.

Umerski A, Srivastava GP.

Phys Rev B Condens Matter. 1995 Jan 15;51(4):2334-2346. No abstract available.

PMID:
9978986
49.

Theoretical study of the anharmonic decay of nonequilibrium LO phonons in semiconductor structures.

Usher S, Srivastava GP.

Phys Rev B Condens Matter. 1994 Nov 15;50(19):14179-14186. No abstract available.

PMID:
9975638
50.

Electronic structure of

Ikonic Z, Srivastava GP, Inkson JC.

Phys Rev B Condens Matter. 1994 Apr 15;49(15):10749-10752. No abstract available.

PMID:
10009907

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