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Items: 29

1.

Uncovering thousands of new peptides with sequence-mask-search hybrid de novo peptide sequencing framework.

Karunratanakul K, Tang HY, Speicher DW, Chuangsuwanich E, Sriswasdi S.

Mol Cell Proteomics. 2019 Oct 7. pii: mcp.TIR119.001656. doi: 10.1074/mcp.TIR119.001656. [Epub ahead of print]

2.

Genome and transcriptome evolve separately in recently hybridized Trichosporon fungi.

Sriswasdi S, Takashima M, Manabe RI, Ohkuma M, Iwasaki W.

Commun Biol. 2019 Jul 19;2:263. doi: 10.1038/s42003-019-0515-2. eCollection 2019.

3.

MHCSeqNet: a deep neural network model for universal MHC binding prediction.

Phloyphisut P, Pornputtapong N, Sriswasdi S, Chuangsuwanich E.

BMC Bioinformatics. 2019 May 28;20(1):270. doi: 10.1186/s12859-019-2892-4.

4.

Development of a Novel Neuro-immune and Opioid-Associated Fingerprint with a Cross-Validated Ability to Identify and Authenticate Unknown Patients with Major Depression: Far Beyond Differentiation, Discrimination, and Classification.

Al-Hakeim HK, Al-Fadhel SZ, Al-Dujaili AH, Carvalho A, Sriswasdi S, Maes M.

Mol Neurobiol. 2019 Nov;56(11):7822-7835. doi: 10.1007/s12035-019-01647-0. Epub 2019 May 23.

PMID:
31124079
5.

Recognition and delineation of yeast genera based on genomic data: Lessons from Trichosporonales.

Takashima M, Manabe RI, Nishimura Y, Endoh R, Ohkuma M, Sriswasdi S, Sugita T, Iwasaki W.

Fungal Genet Biol. 2019 Sep;130:31-42. doi: 10.1016/j.fgb.2019.04.013. Epub 2019 Apr 23.

PMID:
31026590
6.

Supervised machine learning to decipher the complex associations between neuro-immune biomarkers and quality of life in schizophrenia.

Kanchanatawan B, Sriswasdi S, Maes M.

Metab Brain Dis. 2019 Feb;34(1):267-282. doi: 10.1007/s11011-018-0339-7. Epub 2018 Nov 22.

PMID:
30467771
7.

Towards a new classification of stable phase schizophrenia into major and simple neuro-cognitive psychosis: Results of unsupervised machine learning analysis.

Kanchanatawan B, Sriswasdi S, Thika S, Stoyanov D, Sirivichayakul S, Carvalho AF, Geffard M, Maes M.

J Eval Clin Pract. 2018 Aug;24(4):879-891. doi: 10.1111/jep.12945. Epub 2018 May 23.

PMID:
29790237
8.

Episodic memory and delayed recall are significantly more impaired in younger patients with deficit schizophrenia than in elderly patients with amnestic mild cognitive impairment.

Kanchanatawan B, Tangwongchai S, Supasitthumrong T, Sriswasdi S, Maes M.

PLoS One. 2018 May 15;13(5):e0197004. doi: 10.1371/journal.pone.0197004. eCollection 2018.

9.

Characteristics of Mild Cognitive Impairment Using the Thai Version of the Consortium to Establish a Registry for Alzheimer's Disease Tests: A Multivariate and Machine Learning Study.

Tunvirachaisakul C, Supasitthumrong T, Tangwongchai S, Hemrunroj S, Chuchuen P, Tawankanjanachot I, Likitchareon Y, Phanthumchinda K, Sriswasdi S, Maes M.

Dement Geriatr Cogn Disord. 2018;45(1-2):38-48. doi: 10.1159/000487232. Epub 2018 Apr 4.

PMID:
29617684
10.

Deficit schizophrenia is a discrete diagnostic category defined by neuro-immune and neurocognitive features: results of supervised machine learning.

Kanchanatawan B, Sriswasdi S, Thika S, Sirivichayakul S, Carvalho AF, Geffard M, Kubera M, Maes M.

Metab Brain Dis. 2018 Aug;33(4):1053-1067. doi: 10.1007/s11011-018-0208-4. Epub 2018 Mar 11.

PMID:
29527624
11.

Generalist species drive microbial dispersion and evolution.

Sriswasdi S, Yang CC, Iwasaki W.

Nat Commun. 2017 Oct 27;8(1):1162. doi: 10.1038/s41467-017-01265-1.

12.

A Trichosporonales genome tree based on 27 haploid and three evolutionarily conserved 'natural' hybrid genomes.

Takashima M, Sriswasdi S, Manabe RI, Ohkuma M, Sugita T, Iwasaki W.

Yeast. 2018 Jan;35(1):99-111. doi: 10.1002/yea.3284. Epub 2017 Dec 6.

13.

Full-Length Anion Exchanger 1 Structure and Interactions with Ankyrin-1 Determined by Zero Length Crosslinking of Erythrocyte Membranes.

Rivera-Santiago R, Harper SL, Sriswasdi S, Hembach P, Speicher DW.

Structure. 2017 Jan 3;25(1):132-145. doi: 10.1016/j.str.2016.11.017. Epub 2016 Dec 15.

14.

Global deceleration of gene evolution following recent genome hybridizations in fungi.

Sriswasdi S, Takashima M, Manabe R, Ohkuma M, Sugita T, Iwasaki W.

Genome Res. 2016 Aug;26(8):1081-90. doi: 10.1101/gr.205948.116. Epub 2016 Jul 20.

15.

The Physiological Molecular Shape of Spectrin: A Compact Supercoil Resembling a Chinese Finger Trap.

Brown JW, Bullitt E, Sriswasdi S, Harper S, Speicher DW, McKnight CJ.

PLoS Comput Biol. 2015 Jun 11;11(6):e1004302. doi: 10.1371/journal.pcbi.1004302. eCollection 2015 Jun.

16.

Probing structures of large protein complexes using zero-length cross-linking.

Rivera-Santiago RF, Sriswasdi S, Harper SL, Speicher DW.

Methods. 2015 Nov 1;89:99-111. doi: 10.1016/j.ymeth.2015.04.031. Epub 2015 May 1. Review.

17.

Solution structure of the reduced form of human peroxiredoxin-6 elucidated using zero-length chemical cross-linking and homology modelling.

Rivera-Santiago RF, Harper SL, Zhou S, Sriswasdi S, Feinstein SI, Fisher AB, Speicher DW.

Biochem J. 2015 May 15;468(1):87-98. doi: 10.1042/BJ20141463.

18.

Dysferlin and other non-red cell proteins accumulate in the red cell membrane of Diamond-Blackfan Anemia patients.

Pesciotta EN, Sriswasdi S, Tang HY, Speicher DW, Mason PJ, Bessler M.

PLoS One. 2014 Jan 14;9(1):e85504. doi: 10.1371/journal.pone.0085504. eCollection 2014.

19.

Probing large conformational rearrangements in wild-type and mutant spectrin using structural mass spectrometry.

Sriswasdi S, Harper SL, Tang HY, Gallagher PG, Speicher DW.

Proc Natl Acad Sci U S A. 2014 Feb 4;111(5):1801-6. doi: 10.1073/pnas.1317620111. Epub 2014 Jan 22.

20.

Enhanced identification of zero-length chemical cross-links using label-free quantitation and high-resolution fragment ion spectra.

Sriswasdi S, Harper SL, Tang HY, Speicher DW.

J Proteome Res. 2014 Feb 7;13(2):898-914. doi: 10.1021/pr400953w. Epub 2014 Jan 7.

21.

Comparative secretome analysis of epithelial and mesenchymal subpopulations of head and neck squamous cell carcinoma identifies S100A4 as a potential therapeutic target.

Rasanen K, Sriswasdi S, Valiga A, Tang HY, Zhang G, Perego M, Somasundaram R, Li L, Speicher K, Klein-Szanto AJ, Basu D, Rustgi AK, Speicher DW, Herlyn M.

Mol Cell Proteomics. 2013 Dec;12(12):3778-92. doi: 10.1074/mcp.M113.029587. Epub 2013 Sep 13.

22.

The common hereditary elliptocytosis-associated α-spectrin L260P mutation perturbs erythrocyte membranes by stabilizing spectrin in the closed dimer conformation.

Harper SL, Sriswasdi S, Tang HY, Gaetani M, Gallagher PG, Speicher DW.

Blood. 2013 Oct 24;122(17):3045-53. doi: 10.1182/blood-2013-02-487702. Epub 2013 Aug 23.

23.

Epigenetic regulation of condensin-mediated genome organization during the cell cycle and upon DNA damage through histone H3 lysine 56 acetylation.

Tanaka A, Tanizawa H, Sriswasdi S, Iwasaki O, Chatterjee AG, Speicher DW, Levin HL, Noguchi E, Noma K.

Mol Cell. 2012 Nov 30;48(4):532-46. doi: 10.1016/j.molcel.2012.09.011. Epub 2012 Oct 18.

24.

A label-free proteome analysis strategy for identifying quantitative changes in erythrocyte membranes induced by red cell disorders.

Pesciotta EN, Sriswasdi S, Tang HY, Mason PJ, Bessler M, Speicher DW.

J Proteomics. 2012 Dec 5;76 Spec No.:194-202. doi: 10.1016/j.jprot.2012.08.010. Epub 2012 Aug 29.

25.

Systematic discovery of ectopic pregnancy serum biomarkers using 3-D protein profiling coupled with label-free quantitation.

Beer LA, Tang HY, Sriswasdi S, Barnhart KT, Speicher DW.

J Proteome Res. 2011 Mar 4;10(3):1126-38. doi: 10.1021/pr1008866. Epub 2011 Jan 7.

26.

Systematic analysis of pleiotropy in C. elegans early embryogenesis.

Zou L, Sriswasdi S, Ross B, Missiuro PV, Liu J, Ge H.

PLoS Comput Biol. 2008 Feb 29;4(2):e1000003. doi: 10.1371/journal.pcbi.1000003.

27.

Risk factors of intraoperative oxygen desaturation: a case-control study of 152,314 anesthetics.

Charuluxananan S, Suraseranivongse S, Punjasawadwong Y, Somboonviboon W, Sriswasdi S, Pranootnarabhal T, Chanchayanon T, Chau-in W, Intarut N.

J Med Assoc Thai. 2007 Nov;90(11):2359-65.

PMID:
18181320
28.

Bispectral index in assessment of 3% and 4.5% desflurane in 50% N2O for caesarean section.

Ittichaikulthol W, Sriswasdi S, Prachanpanich N, Watcharotayangul J, Seangrung R, Sithamwilai W.

J Med Assoc Thai. 2007 Aug;90(8):1546-50.

PMID:
17926983
29.

The effect of ephedrine on the onset time of rocuronium in Thai patients.

Ittichaikulthol W, Sriswasdi S, Nual-on S, Hongpuang S, Sornil A.

J Med Assoc Thai. 2004 Mar;87(3):264-9.

PMID:
15117042

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