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Items: 18

1.

Wavelet-Based Genomic Signal Processing for Centromere Identification and Hypothesis Generation.

Weighill D, Macaya-Sanz D, DiFazio SP, Joubert W, Shah M, Schmutz J, Sreedasyam A, Tuskan G, Jacobson D.

Front Genet. 2019 May 31;10:487. doi: 10.3389/fgene.2019.00487. eCollection 2019.

2.

Multi-Phenotype Association Decomposition: Unraveling Complex Gene-Phenotype Relationships.

Weighill D, Jones P, Bleker C, Ranjan P, Shah M, Zhao N, Martin M, DiFazio S, Macaya-Sanz D, Schmutz J, Sreedasyam A, Tschaplinski T, Tuskan G, Jacobson D.

Front Genet. 2019 May 10;10:417. doi: 10.3389/fgene.2019.00417. eCollection 2019.

3.

The genome sequence of segmental allotetraploid peanut Arachis hypogaea.

Bertioli DJ, Jenkins J, Clevenger J, Dudchenko O, Gao D, Seijo G, Leal-Bertioli SCM, Ren L, Farmer AD, Pandey MK, Samoluk SS, Abernathy B, Agarwal G, Ballén-Taborda C, Cameron C, Campbell J, Chavarro C, Chitikineni A, Chu Y, Dash S, El Baidouri M, Guo B, Huang W, Kim KD, Korani W, Lanciano S, Lui CG, Mirouze M, Moretzsohn MC, Pham M, Shin JH, Shirasawa K, Sinharoy S, Sreedasyam A, Weeks NT, Zhang X, Zheng Z, Sun Z, Froenicke L, Aiden EL, Michelmore R, Varshney RK, Holbrook CC, Cannon EKS, Scheffler BE, Grimwood J, Ozias-Akins P, Cannon SB, Jackson SA, Schmutz J.

Nat Genet. 2019 May;51(5):877-884. doi: 10.1038/s41588-019-0405-z. Epub 2019 May 1.

PMID:
31043755
4.

Engineering Tree Seasonal Cycles of Growth Through Chromatin Modification.

Conde D, Perales M, Sreedasyam A, Tuskan GA, Lloret A, Badenes ML, González-Melendi P, Ríos G, Allona I.

Front Plant Sci. 2019 Apr 5;10:412. doi: 10.3389/fpls.2019.00412. eCollection 2019.

5.

The genomic landscape of molecular responses to natural drought stress in Panicum hallii.

Lovell JT, Jenkins J, Lowry DB, Mamidi S, Sreedasyam A, Weng X, Barry K, Bonnette J, Campitelli B, Daum C, Gordon SP, Gould BA, Khasanova A, Lipzen A, MacQueen A, Palacio-Mejía JD, Plott C, Shakirov EV, Shu S, Yoshinaga Y, Zane M, Kudrna D, Talag JD, Rokhsar D, Grimwood J, Schmutz J, Juenger TE.

Nat Commun. 2018 Dec 6;9(1):5213. doi: 10.1038/s41467-018-07669-x.

6.

A mosaic monoploid reference sequence for the highly complex genome of sugarcane.

Garsmeur O, Droc G, Antonise R, Grimwood J, Potier B, Aitken K, Jenkins J, Martin G, Charron C, Hervouet C, Costet L, Yahiaoui N, Healey A, Sims D, Cherukuri Y, Sreedasyam A, Kilian A, Chan A, Van Sluys MA, Swaminathan K, Town C, Bergès H, Simmons B, Glaszmann JC, van der Vossen E, Henry R, Schmutz J, D'Hont A.

Nat Commun. 2018 Jul 6;9(1):2638. doi: 10.1038/s41467-018-05051-5.

7.

Revealing the transcriptomic complexity of switchgrass by PacBio long-read sequencing.

Zuo C, Blow M, Sreedasyam A, Kuo RC, Ramamoorthy GK, Torres-Jerez I, Li G, Wang M, Dilworth D, Barry K, Udvardi M, Schmutz J, Tang Y, Xu Y.

Biotechnol Biofuels. 2018 Jun 20;11:170. doi: 10.1186/s13068-018-1167-z. eCollection 2018.

8.

PlantSEED enables automated annotation and reconstruction of plant primary metabolism with improved compartmentalization and comparative consistency.

Seaver SMD, Lerma-Ortiz C, Conrad N, Mikaili A, Sreedasyam A, Hanson AD, Henry CS.

Plant J. 2018 Sep;95(6):1102-1113. doi: 10.1111/tpj.14003. Epub 2018 Aug 9.

9.

The Physcomitrella patens gene atlas project: large-scale RNA-seq based expression data.

Perroud PF, Haas FB, Hiss M, Ullrich KK, Alboresi A, Amirebrahimi M, Barry K, Bassi R, Bonhomme S, Chen H, Coates JC, Fujita T, Guyon-Debast A, Lang D, Lin J, Lipzen A, Nogué F, Oliver MJ, Ponce de León I, Quatrano RS, Rameau C, Reiss B, Reski R, Ricca M, Saidi Y, Sun N, Szövényi P, Sreedasyam A, Grimwood J, Stacey G, Schmutz J, Rensing SA.

Plant J. 2018 Jul;95(1):168-182. doi: 10.1111/tpj.13940. Epub 2018 Jun 7. Erratum in: Plant J. 2019 May;98(4):759.

10.

Piperlongumine potentiates the effects of gemcitabine in in vitro and in vivo human pancreatic cancer models.

Mohammad J, Dhillon H, Chikara S, Mamidi S, Sreedasyam A, Chittem K, Orr M, Wilkinson JC, Reindl KM.

Oncotarget. 2017 Dec 23;9(12):10457-10469. doi: 10.18632/oncotarget.23623. eCollection 2018 Feb 13.

11.

The Sorghum bicolor reference genome: improved assembly, gene annotations, a transcriptome atlas, and signatures of genome organization.

McCormick RF, Truong SK, Sreedasyam A, Jenkins J, Shu S, Sims D, Kennedy M, Amirebrahimi M, Weers BD, McKinley B, Mattison A, Morishige DT, Grimwood J, Schmutz J, Mullet JE.

Plant J. 2018 Jan;93(2):338-354. doi: 10.1111/tpj.13781. Epub 2017 Dec 28.

12.

Flaxseed Consumption Inhibits Chemically Induced Lung Tumorigenesis and Modulates Expression of Phase II Enzymes and Inflammatory Cytokines in A/J Mice.

Chikara S, Mamidi S, Sreedasyam A, Chittem K, Pietrofesa R, Zuppa A, Moorthy G, Dyer N, Christofidou-Solomidou M, Reindl KM.

Cancer Prev Res (Phila). 2018 Jan;11(1):27-37. doi: 10.1158/1940-6207.CAPR-17-0119. Epub 2017 Oct 26.

13.

Genome-wide analysis of lectin receptor-like kinases in Populus.

Yang Y, Labbé J, Muchero W, Yang X, Jawdy SS, Kennedy M, Johnson J, Sreedasyam A, Schmutz J, Tuskan GA, Chen JG.

BMC Genomics. 2016 Sep 1;17:699. doi: 10.1186/s12864-016-3026-2.

14.

Drought responsive gene expression regulatory divergence between upland and lowland ecotypes of a perennial C4 grass.

Lovell JT, Schwartz S, Lowry DB, Shakirov EV, Bonnette JE, Weng X, Wang M, Johnson J, Sreedasyam A, Plott C, Jenkins J, Schmutz J, Juenger TE.

Genome Res. 2016 Apr;26(4):510-8. doi: 10.1101/gr.198135.115. Epub 2016 Mar 7.

15.

Multi-Omics Approach Identifies Molecular Mechanisms of Plant-Fungus Mycorrhizal Interaction.

Larsen PE, Sreedasyam A, Trivedi G, Desai S, Dai Y, Cseke LJ, Collart FR.

Front Plant Sci. 2016 Jan 19;6:1061. doi: 10.3389/fpls.2015.01061. eCollection 2015.

16.

Using next generation transcriptome sequencing to predict an ectomycorrhizal metabolome.

Larsen PE, Sreedasyam A, Trivedi G, Podila GK, Cseke LJ, Collart FR.

BMC Syst Biol. 2011 May 13;5:70. doi: 10.1186/1752-0509-5-70.

17.

Using deep RNA sequencing for the structural annotation of the Laccaria bicolor mycorrhizal transcriptome.

Larsen PE, Trivedi G, Sreedasyam A, Lu V, Podila GK, Collart FR.

PLoS One. 2010 Jul 6;5(7):e9780. doi: 10.1371/journal.pone.0009780.

18.

Is high body mass index associated with increased risk of groin complications using manual compression after diagnostic coronary angiography?

Mathur G, Sreedasyam A, Panayotova R, Rodrigues E, Davis G.

Int J Cardiol. 2008 Nov 12;130(2):e83-5. doi: 10.1016/j.ijcard.2007.11.105. Epub 2008 Feb 5.

PMID:
18255173

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