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Items: 14

1.

PAX8 activates metabolic genes via enhancer elements in Renal Cell Carcinoma.

Bleu M, Gaulis S, Lopes R, Sprouffske K, Apfel V, Holwerda S, Pregnolato M, Yildiz U, Cordoʹ V, Dost AFM, Knehr J, Carbone W, Lohmann F, Lin CY, Bradner JE, Kauffmann A, Tordella L, Roma G, Galli GG.

Nat Commun. 2019 Aug 20;10(1):3739. doi: 10.1038/s41467-019-11672-1.

2.

High mutation rates limit evolutionary adaptation in Escherichia coli.

Sprouffske K, Aguilar-Rodríguez J, Sniegowski P, Wagner A.

PLoS Genet. 2018 Apr 27;14(4):e1007324. doi: 10.1371/journal.pgen.1007324. eCollection 2018 Apr.

3.

Assessing the benefits of horizontal gene transfer by laboratory evolution and genome sequencing.

Chu HY, Sprouffske K, Wagner A.

BMC Evol Biol. 2018 Apr 19;18(1):54. doi: 10.1186/s12862-018-1164-7.

4.

Effect of Population Size and Mutation Rate on the Evolution of RNA Sequences on an Adaptive Landscape Determined by RNA Folding.

Vahdati AR, Sprouffske K, Wagner A.

Int J Biol Sci. 2017 Sep 5;13(9):1138-1151. doi: 10.7150/ijbs.19436. eCollection 2017.

5.

The role of recombination in evolutionary adaptation of Escherichia coli to a novel nutrient.

Chu HY, Sprouffske K, Wagner A.

J Evol Biol. 2017 Sep;30(9):1692-1711. doi: 10.1111/jeb.13132. Epub 2017 Jul 13.

6.

Growthcurver: an R package for obtaining interpretable metrics from microbial growth curves.

Sprouffske K, Wagner A.

BMC Bioinformatics. 2016 Apr 19;17:172. doi: 10.1186/s12859-016-1016-7.

7.

How Archiving by Freezing Affects the Genome-Scale Diversity of Escherichia coli Populations.

Sprouffske K, Aguilar-Rodríguez J, Wagner A.

Genome Biol Evol. 2016 May 9;8(5):1290-8. doi: 10.1093/gbe/evw054.

8.

An evolutionary explanation for the presence of cancer nonstem cells in neoplasms.

Sprouffske K, Athena Aktipis C, Radich JP, Carroll M, Nedelcu AM, Maley CC.

Evol Appl. 2013 Jan;6(1):92-101. doi: 10.1111/eva.12030. Epub 2012 Nov 26.

9.

Peto's paradox revisited: theoretical evolutionary dynamics of cancer in wild populations.

Roche B, Sprouffske K, Hbid H, Missé D, Thomas F.

Evol Appl. 2013 Jan;6(1):109-16. doi: 10.1111/eva.12025. Epub 2012 Nov 22.

10.

Cancer in light of experimental evolution.

Sprouffske K, Merlo LM, Gerrish PJ, Maley CC, Sniegowski PD.

Curr Biol. 2012 Sep 11;22(17):R762-71. doi: 10.1016/j.cub.2012.06.065. Review.

11.

Solving the puzzle of metastasis: the evolution of cell migration in neoplasms.

Chen J, Sprouffske K, Huang Q, Maley CC.

PLoS One. 2011 Apr 27;6(4):e17933. doi: 10.1371/journal.pone.0017933.

12.

Accurate reconstruction of the temporal order of mutations in neoplastic progression.

Sprouffske K, Pepper JW, Maley CC.

Cancer Prev Res (Phila). 2011 Jul;4(7):1135-44. doi: 10.1158/1940-6207.CAPR-10-0374. Epub 2011 Apr 13.

13.

Animal cell differentiation patterns suppress somatic evolution.

Pepper JW, Sprouffske K, Maley CC.

PLoS Comput Biol. 2007 Dec;3(12):e250.

14.

Fast NMDA receptor-mediated synaptic currents in neurons from mice lacking the epsilon2 (NR2B) subunit.

Tovar KR, Sprouffske K, Westbrook GL.

J Neurophysiol. 2000 Jan;83(1):616-20.

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