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Items: 1 to 50 of 277

1.

Genetic Potential of the Biocontrol Agent Pseudomonas brassicacearum (Formerly P. trivialis) 3Re2-7 Unraveled by Genome Sequencing and Mining, Comparative Genomics and Transcriptomics.

Nelkner J, Tejerizo GT, Hassa J, Lin TW, Witte J, Verwaaijen B, Winkler A, Bunk B, Spröer C, Overmann J, Grosch R, Pühler A, Schlüter AA.

Genes (Basel). 2019 Aug 9;10(8). pii: E601. doi: 10.3390/genes10080601.

2.

Next Generation DNA-Seq and Differential RNA-Seq Allow Re-annotation of the Pyrococcus furiosus DSM 3638 Genome and Provide Insights Into Archaeal Antisense Transcription.

Grünberger F, Reichelt R, Bunk B, Spröer C, Overmann J, Rachel R, Grohmann D, Hausner W.

Front Microbiol. 2019 Jul 12;10:1603. doi: 10.3389/fmicb.2019.01603. eCollection 2019.

3.

A novel group of Rhizobium tumorigenes-like agrobacteria associated with crown gall disease of rhododendron and blueberry.

Kuzmanović N, Behrens P, Idczak E, Wagner S, Goetz M, Spröer C, Bunk B, Overmann J, Smalla K.

Phytopathology. 2019 Jul 11. doi: 10.1094/PHYTO-05-19-0167-R. [Epub ahead of print]

PMID:
31294681
4.

Inactivation of farR Causes High Rhodomyrtone Resistance and Increased Pathogenicity in Staphylococcus aureus.

Nguyen MT, Saising J, Tribelli PM, Nega M, Diene SM, François P, Schrenzel J, Spröer C, Bunk B, Ebner P, Hertlein T, Kumari N, Härtner T, Wistuba D, Voravuthikunchai SP, Mäder U, Ohlsen K, Götz F.

Front Microbiol. 2019 May 28;10:1157. doi: 10.3389/fmicb.2019.01157. eCollection 2019.

5.

Leucobacter muris sp. nov., isolated from the nose of a laboratory mouse.

Benga L, Spröer C, Schumann P, Verbarg S, Bunk B, Engelhardt E, Benten WPM, Sager M.

Int J Syst Evol Microbiol. 2019 Jul;69(7):2095-2100. doi: 10.1099/ijsem.0.003446. Epub 2019 May 17.

PMID:
31099739
6.

Arundinibacter roseus gen. nov., sp. nov., a new member of the family Cytophagaceae.

Szuróczki S, Khayer B, Spröer C, Toumi M, Szabó A, Felföldi T, Schumann P, Tóth E.

Int J Syst Evol Microbiol. 2019 Jul;69(7):2076-2081. doi: 10.1099/ijsem.0.003436. Epub 2019 May 17.

PMID:
31099731
7.

Isolation, characterization and analysis of bacteriophages from the haloalkaline lake Elmenteita, Kenya.

Akhwale JK, Rohde M, Rohde C, Bunk B, Spröer C, Boga HI, Klenk HP, Wittmann J.

PLoS One. 2019 Apr 25;14(4):e0215734. doi: 10.1371/journal.pone.0215734. eCollection 2019.

8.

Comparative Transcriptomic Profiling of Yersinia enterocolitica O:3 and O:8 Reveals Major Expression Differences of Fitness- and Virulence-Relevant Genes Indicating Ecological Separation.

Schmühl C, Beckstette M, Heroven AK, Bunk B, Spröer C, McNally A, Overmann J, Dersch P.

mSystems. 2019 Apr 23;4(2). pii: e00239-18. doi: 10.1128/mSystems.00239-18. eCollection 2019 Mar-Apr.

9.

Modestobacter italicus sp. nov., isolated from Carrara marble quarry and emended descriptions of the genus Modestobacter and the species Modestobacter marinus, Modestobacter multiseptatus, Modestobacter roseus and Modestobacter versicolor.

Montero-Calasanz MDC, Yaramis A, Nouioui I, Igual JM, Spröer C, Castro JF, Schumann P, Klenk HP, Urzì C.

Int J Syst Evol Microbiol. 2019 Jun;69(6):1537-1545. doi: 10.1099/ijsem.0.003282. Epub 2019 Apr 16.

PMID:
30990393
10.

Genomic and transcriptomic characterization of Pseudomonas aeruginosa small colony variants derived from a chronic infection model.

Irvine S, Bunk B, Bayes HK, Spröer C, Connolly JPR, Six A, Evans TJ, Roe AJ, Overmann J, Walker D.

Microb Genom. 2019 Apr;5(4). doi: 10.1099/mgen.0.000262. Epub 2019 Mar 28.

11.

Planomicrobium iranicum sp. nov., a novel slightly halophilic bacterium isolated from a hypersaline wetland.

Ramezani M, Nikou MM, Pourmohyadini M, Spröer C, Schumann P, Harirchi S, Aryaefar M, Fazeli SAS, Amoozegar MA, Ventosa A.

Int J Syst Evol Microbiol. 2019 May;69(5):1433-1437. doi: 10.1099/ijsem.0.003332. Epub 2019 Mar 12.

PMID:
30860463
12.

Complete Genome Sequence of the Silicimonas algicola Type Strain, a Representative of the Marine Roseobacter Group Isolated from the Cell Surface of the Marine Diatom Thalassiosira delicatula.

Crenn K, Bunk B, Spröer C, Overmann J, Jeanthon C.

Microbiol Resour Announc. 2019 Feb 28;8(9). pii: e00108-19. doi: 10.1128/MRA.00108-19. eCollection 2019 Feb.

13.

Comparative genomic analysis of eight novel haloalkaliphilic bacteriophages from Lake Elmenteita, Kenya.

Akhwale JK, Rohde M, Rohde C, Bunk B, Spröer C, Klenk HP, Boga HI, Wittmann J.

PLoS One. 2019 Feb 14;14(2):e0212102. doi: 10.1371/journal.pone.0212102. eCollection 2019.

14.

Cobaviruses - a new globally distributed phage group infecting Rhodobacteraceae in marine ecosystems.

Bischoff V, Bunk B, Meier-Kolthoff JP, Spröer C, Poehlein A, Dogs M, Nguyen M, Petersen J, Daniel R, Overmann J, Göker M, Simon M, Brinkhoff T, Moraru C.

ISME J. 2019 Jun;13(6):1404-1421. doi: 10.1038/s41396-019-0362-7. Epub 2019 Feb 4.

PMID:
30718806
15.

Anaerobacillus alkaliphilus sp. nov., a novel alkaliphilic and moderately halophilic bacterium.

Borsodi AK, Aszalós JM, Bihari P, Nagy I, Schumann P, Spröer C, Kovács AL, Bóka K, Dobosy P, Óvári M, Szili-Kovács T, Tóth E.

Int J Syst Evol Microbiol. 2019 Mar;69(3):631-637. doi: 10.1099/ijsem.0.003128. Epub 2019 Jan 23.

PMID:
30672727
16.

Genomic analysis of three Clostridioides difficile isolates from urban water sources.

Numberger D, Riedel T, McEwen G, Nübel U, Frentrup M, Schober I, Bunk B, Spröer C, Overmann J, Grossart HP, Greenwood AD.

Anaerobe. 2019 Apr;56:22-26. doi: 10.1016/j.anaerobe.2019.01.002. Epub 2019 Jan 8.

PMID:
30633971
17.

Divergent evolution in the genomes of closely related lacertids, Lacerta viridis and L. bilineata, and implications for speciation.

Kolora SRR, Weigert A, Saffari A, Kehr S, Walter Costa MB, Spröer C, Indrischek H, Chintalapati M, Lohse K, Doose G, Overmann J, Bunk B, Bleidorn C, Grimm-Seyfarth A, Henle K, Nowick K, Faria R, Stadler PF, Schlegel M.

Gigascience. 2019 Feb 1;8(2). pii: giy160. doi: 10.1093/gigascience/giy160.

18.

Comparative Genomics Reveal a Flagellar System, a Type VI Secretion System and Plant Growth-Promoting Gene Clusters Unique to the Endophytic Bacterium Kosakonia radicincitans.

Becker M, Patz S, Becker Y, Berger B, Drungowski M, Bunk B, Overmann J, Spröer C, Reetz J, Tchuisseu Tchakounte GV, Ruppel S.

Front Microbiol. 2018 Aug 30;9:1997. doi: 10.3389/fmicb.2018.01997. eCollection 2018.

19.

Psychromicrobium lacuslunae sp. nov., isolated from a high altitude lake.

Kiran S, Schumann P, Busse HJ, Spröer C, Rana A, Pal M, Korpole S, Tewari R, Gulati A.

Int J Syst Evol Microbiol. 2018 Nov;68(11):3416-3423. doi: 10.1099/ijsem.0.002997. Epub 2018 Sep 11.

PMID:
30204584
20.

The transducer-like protein Tlp12 of Campylobacter jejuni is involved in glutamate and pyruvate chemotaxis.

Lübke AL, Minatelli S, Riedel T, Lugert R, Schober I, Spröer C, Overmann J, Groß U, Zautner AE, Bohne W.

BMC Microbiol. 2018 Sep 10;18(1):111. doi: 10.1186/s12866-018-1254-0.

21.

Long-read DNA metabarcoding of ribosomal RNA in the analysis of fungi from aquatic environments.

Heeger F, Bourne EC, Baschien C, Yurkov A, Bunk B, Spröer C, Overmann J, Mazzoni CJ, Monaghan MT.

Mol Ecol Resour. 2018 Nov;18(6):1500-1514. doi: 10.1111/1755-0998.12937. Epub 2018 Sep 23.

PMID:
30106226
22.

Genetic Adaptation of a Mevalonate Pathway Deficient Mutant in Staphylococcus aureus.

Reichert S, Ebner P, Bonetti EJ, Luqman A, Nega M, Schrenzel J, Spröer C, Bunk B, Overmann J, Sass P, François P, Götz F.

Front Microbiol. 2018 Jul 12;9:1539. doi: 10.3389/fmicb.2018.01539. eCollection 2018.

23.

The complete genome sequence of Rhodobaca barguzinensis alga05 (DSM 19920) documents its adaptation for life in soda lakes.

Kopejtka K, Tomasch J, Bunk B, Spröer C, Wagner-Döbler I, Koblížek M.

Extremophiles. 2018 Nov;22(6):839-849. doi: 10.1007/s00792-018-1041-8. Epub 2018 Jul 18.

PMID:
30022245
24.

Description and Comparative Genomics of Macrococcus caseolyticus subsp. hominis subsp. nov., Macrococcus goetzii sp. nov., Macrococcus epidermidis sp. nov., and Macrococcus bohemicus sp. nov., Novel Macrococci From Human Clinical Material With Virulence Potential and Suspected Uptake of Foreign DNA by Natural Transformation.

Mašlaňová I, Wertheimer Z, Sedláček I, Švec P, Indráková A, Kovařovic V, Schumann P, Spröer C, Králová S, Šedo O, Krištofová L, Vrbovská V, Füzik T, Petráš P, Zdráhal Z, Ružičková V, Doškař J, Pantuček R.

Front Microbiol. 2018 Jun 13;9:1178. doi: 10.3389/fmicb.2018.01178. eCollection 2018.

25.

Convergent Loss of ABC Transporter Genes From Clostridioides difficile Genomes Is Associated With Impaired Tyrosine Uptake and p-Cresol Production.

Steglich M, Hofmann JD, Helmecke J, Sikorski J, Spröer C, Riedel T, Bunk B, Overmann J, Neumann-Schaal M, Nübel U.

Front Microbiol. 2018 May 8;9:901. doi: 10.3389/fmicb.2018.00901. eCollection 2018.

26.

Salipaludibacillus halalkaliphilus sp. nov., a moderately haloalkaliphilic bacterium from a coastal-marine wetland.

Amoozegar MA, Shahinpei A, Makzum S, Rafieyan S, Moshtaghi Nikou M, Spröer C, Ventosa A.

Int J Syst Evol Microbiol. 2018 Jul;68(7):2214-2219. doi: 10.1099/ijsem.0.002814. Epub 2018 May 23.

PMID:
29790846
27.

Whole-genome comparison of high and low virulent Staphylococcus aureus isolates inducing implant-associated bone infections.

Mannala GK, Koettnitz J, Mohamed W, Sommer U, Lips KS, Spröer C, Bunk B, Overmann J, Hain T, Heiss C, Domann E, Alt V.

Int J Med Microbiol. 2018 Jul;308(5):505-513. doi: 10.1016/j.ijmm.2018.04.005. Epub 2018 Apr 25.

PMID:
29739668
28.

Genome biology of a novel lineage of planctomycetes widespread in anoxic aquatic environments.

Spring S, Bunk B, Spröer C, Rohde M, Klenk HP.

Environ Microbiol. 2018 Jul;20(7):2438-2455. doi: 10.1111/1462-2920.14253. Epub 2018 Jul 26.

PMID:
29697183
29.

Enterobacter bugandensis: a novel enterobacterial species associated with severe clinical infection.

Pati NB, Doijad SP, Schultze T, Mannala GK, Yao Y, Jaiswal S, Ryan D, Suar M, Gwozdzinski K, Bunk B, Mraheil MA, Marahiel MA, Hegemann JD, Spröer C, Goesmann A, Falgenhauer L, Hain T, Imirzalioglu C, Mshana SE, Overmann J, Chakraborty T.

Sci Rep. 2018 Mar 29;8(1):5392. doi: 10.1038/s41598-018-23069-z.

30.

Synchronous termination of replication of the two chromosomes is an evolutionary selected feature in Vibrionaceae.

Kemter FS, Messerschmidt SJ, Schallopp N, Sobetzko P, Lang E, Bunk B, Spröer C, Teschler JK, Yildiz FH, Overmann J, Waldminghaus T.

PLoS Genet. 2018 Mar 5;14(3):e1007251. doi: 10.1371/journal.pgen.1007251. eCollection 2018 Mar.

31.

Blastococcus xanthinilyticus sp. nov., isolated from monument.

Hezbri K, Nouioui I, Rohde M, Spröer C, Schumann P, Gtari M, Klenk HP, Montero-Calasanz MDC, Ghodhbane-Gtari F.

Int J Syst Evol Microbiol. 2018 Apr;68(4):1177-1183. doi: 10.1099/ijsem.0.002646. Epub 2018 Feb 19.

PMID:
29458502
32.

Complete Genome Sequence of Kyrpidia sp. Strain EA-1, a Thermophilic Knallgas Bacterium, Isolated from the Azores.

Reiner JE, Lapp CJ, Bunk B, Spröer C, Overmann J, Gescher J.

Genome Announc. 2018 Jan 18;6(3). pii: e01505-17. doi: 10.1128/genomeA.01505-17.

33.

Comparative genome and phenotypic analysis of three Clostridioides difficile strains isolated from a single patient provide insight into multiple infection of C. difficile.

Groß U, Brzuszkiewicz E, Gunka K, Starke J, Riedel T, Bunk B, Spröer C, Wetzel D, Poehlein A, Chibani C, Bohne W, Overmann J, Zimmermann O, Daniel R, Liesegang H.

BMC Genomics. 2018 Jan 2;19(1):1. doi: 10.1186/s12864-017-4368-0.

34.

Trajectories and Drivers of Genome Evolution in Surface-Associated Marine Phaeobacter.

Freese HM, Sikorski J, Bunk B, Scheuner C, Meier-Kolthoff JP, Spröer C, Gram L, Overmann J.

Genome Biol Evol. 2017 Dec 1;9(12):3297-3311. doi: 10.1093/gbe/evx249.

35.

Micromonospora phytophila sp. nov. and Micromonospora luteiviridis sp. nov., isolated as natural inhabitants of plant nodules.

Carro L, Veyisoglu A, Riesco R, Spröer C, Klenk HP, Sahin N, Trujillo ME.

Int J Syst Evol Microbiol. 2018 Jan;68(1):248-253. doi: 10.1099/ijsem.0.002490. Epub 2017 Nov 17.

PMID:
29148367
36.

Paenibacillus xanthanilyticus sp. nov., a xanthan-degrading bacterium isolated from soil.

Ashraf S, Soudi MR, Amoozegar MA, Moshtaghi Nikou M, Spröer C.

Int J Syst Evol Microbiol. 2018 Jan;68(1):76-80. doi: 10.1099/ijsem.0.002453. Epub 2017 Nov 14.

PMID:
29134936
37.

Monitoring microevolution of OXA-48-producing Klebsiella pneumoniae ST147 in a hospital setting by SMRT sequencing.

Zautner AE, Bunk B, Pfeifer Y, Spröer C, Reichard U, Eiffert H, Scheithauer S, Groß U, Overmann J, Bohne W.

J Antimicrob Chemother. 2017 Oct 1;72(10):2737-2744. doi: 10.1093/jac/dkx216.

PMID:
29091199
38.

Genome and Methylome Variation in Helicobacter pylori With a cag Pathogenicity Island During Early Stages of Human Infection.

Nell S, Estibariz I, Krebes J, Bunk B, Graham DY, Overmann J, Song Y, Spröer C, Yang I, Wex T, Korlach J, Malfertheiner P, Suerbaum S.

Gastroenterology. 2018 Feb;154(3):612-623.e7. doi: 10.1053/j.gastro.2017.10.014. Epub 2017 Oct 21.

PMID:
29066327
39.

Nitrincola alkalilacustris sp. nov. and Nitrincola schmidtii sp. nov., alkaliphilic bacteria isolated from soda pans, and emended description of the genus Nitrincola.

Borsodi AK, Korponai K, Schumann P, Spröer C, Felföldi T, Márialigeti K, Szili-Kovács T, Tóth E.

Int J Syst Evol Microbiol. 2017 Dec;67(12):5159-5164. doi: 10.1099/ijsem.0.002437. Epub 2017 Oct 23.

PMID:
29056114
40.

Kocuria salina sp. nov., an actinobacterium isolated from the rhizosphere of the halophyte Arthrocnemum macrostachyum and emended description of Kocuria turfanensis.

Camacho M, Redondo-Gomez S, Rodríguez-Llorente I, Rohde M, Spröer C, Schumann P, Klenk HP, Montero-Calasanz MDC.

Int J Syst Evol Microbiol. 2017 Dec;67(12):5006-5012. doi: 10.1099/ijsem.0.002401. Epub 2017 Oct 16.

PMID:
29034846
41.

Corynebacterium gottingense sp. nov., isolated from a clinical patient.

Atasayar E, Zimmermann O, Spröer C, Schumann P, Groß U.

Int J Syst Evol Microbiol. 2017 Nov;67(11):4494-4499. doi: 10.1099/ijsem.0.002322. Epub 2017 Sep 27.

PMID:
28950931
42.

Nesterenkonia pannonica sp. nov., a novel alkaliphilic and moderately halophilic actinobacterium.

Borsodi AK, Szili-Kovács T, Schumann P, Spröer C, Márialigeti K, Tóth E.

Int J Syst Evol Microbiol. 2017 Oct;67(10):4116-4120. doi: 10.1099/ijsem.0.002263. Epub 2017 Sep 14.

PMID:
28905704
43.

Complete genome sequence of the nematicidal Bacillus thuringiensis MYBT18247.

Hollensteiner J, Poehlein A, Spröer C, Bunk B, Sheppard AE, Rosenstiel P, Schulenburg H, Liesegang H.

J Biotechnol. 2017 Oct 20;260:48-52. doi: 10.1016/j.jbiotec.2017.09.003. Epub 2017 Sep 9.

44.

Bacillus kiskunsagensis sp. nov., a novel alkaliphilic and moderately halophilic bacterium isolated from soda soil.

Borsodi AK, Tóth E, Aszalós JM, Bárány Á, Schumann P, Spröer C, Kovács AL, Márialigeti K, Szili-Kovács T.

Int J Syst Evol Microbiol. 2017 Sep;67(9):3490-3495. doi: 10.1099/ijsem.0.002149. Epub 2017 Aug 25.

PMID:
28857030
45.

Complete Genome sequence of the nematicidal Bacillus thuringiensis MYBT18246.

Hollensteiner J, Poehlein A, Spröer C, Bunk B, Sheppard AE, Rosentstiel P, Schulenburg H, Liesegang H.

Stand Genomic Sci. 2017 Aug 24;12:48. doi: 10.1186/s40793-017-0259-x. eCollection 2017.

46.

Complete Genome Sequence of blaCTX-M-27-Encoding Escherichia coli Strain H105 of Sequence Type 131 Lineage C1/H30R.

Ghosh H, Bunk B, Doijad S, Schmiedel J, Falgenhauer L, Spröer C, Imirzalioglu C, Overmann J, Chakraborty T.

Genome Announc. 2017 Aug 3;5(31). pii: e00736-17. doi: 10.1128/genomeA.00736-17.

47.

Global outbreak of severe Mycobacterium chimaera disease after cardiac surgery: a molecular epidemiological study.

van Ingen J, Kohl TA, Kranzer K, Hasse B, Keller PM, Katarzyna Szafrańska A, Hillemann D, Chand M, Schreiber PW, Sommerstein R, Berger C, Genoni M, Rüegg C, Troillet N, Widmer AF, Becker SL, Herrmann M, Eckmanns T, Haller S, Höller C, Debast SB, Wolfhagen MJ, Hopman J, Kluytmans J, Langelaar M, Notermans DW, Ten Oever J, van den Barselaar P, Vonk ABA, Vos MC, Ahmed N, Brown T, Crook D, Lamagni T, Phin N, Smith EG, Zambon M, Serr A, Götting T, Ebner W, Thürmer A, Utpatel C, Spröer C, Bunk B, Nübel U, Bloemberg GV, Böttger EC, Niemann S, Wagner D, Sax H.

Lancet Infect Dis. 2017 Oct;17(10):1033-1041. doi: 10.1016/S1473-3099(17)30324-9. Epub 2017 Jul 12.

PMID:
28711585
48.

Phaeobacter porticola sp. nov., an antibiotic-producing bacterium isolated from a sea harbour.

Breider S, Freese HM, Spröer C, Simon M, Overmann J, Brinkhoff T.

Int J Syst Evol Microbiol. 2017 Jul;67(7):2153-2159. doi: 10.1099/ijsem.0.001879. Epub 2017 Jul 12.

PMID:
28699865
49.

High metabolic versatility of different toxigenic and non-toxigenic Clostridioides difficile isolates.

Riedel T, Wetzel D, Hofmann JD, Plorin SPEO, Dannheim H, Berges M, Zimmermann O, Bunk B, Schober I, Spröer C, Liesegang H, Jahn D, Overmann J, Groß U, Neumann-Schaal M.

Int J Med Microbiol. 2017 Sep;307(6):311-320. doi: 10.1016/j.ijmm.2017.05.007. Epub 2017 Jun 1.

PMID:
28619474
50.

Genome Sequence of Escherichia coli E28, a Multidrug-Resistant Strain Isolated from a Chicken Carcass, and Its Spontaneously Inducible Prophage.

Schmidt I, Riedel T, Schober I, Bunk B, Spröer C, Bierbrodt A, Lehnherr H, Wittmann J.

Genome Announc. 2017 Jun 1;5(22). pii: e00348-17. doi: 10.1128/genomeA.00348-17.

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