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Items: 33

1.

Fogarty International Center collaborative networks in infectious disease modeling: Lessons learnt in research and capacity building.

Nelson MI, Lloyd-Smith JO, Simonsen L, Rambaut A, Holmes EC, Chowell G, Miller MA, Spiro DJ, Grenfell B, Viboud C.

Epidemics. 2019 Mar;26:116-127. doi: 10.1016/j.epidem.2018.10.004. Epub 2018 Oct 23. Review.

2.

Report on eighth WHO meeting on development of influenza vaccines that induce broadly protective and long-lasting immune responses: Chicago, USA, 23-24 August 2016.

Ortiz JR, Hickling J, Jones R, Donabedian A, Engelhardt OG, Katz JM, Madhi SA, Neuzil KM, Rimmelzwaan GF, Southern J, Spiro DJ, Hombach J.

Vaccine. 2018 Feb 8;36(7):932-938. doi: 10.1016/j.vaccine.2017.11.061. Epub 2017 Dec 6.

3.

Data and product needs for influenza immunization programs in low- and middle-income countries: Rationale and main conclusions of the WHO preferred product characteristics for next-generation influenza vaccines.

Neuzil KM, Bresee JS, de la Hoz F, Johansen K, Karron RA, Krishnan A, Madhi SA, Mangtani P, Spiro DJ, Ortiz JR; WHO Preferred Product Characteristics for Next-Generation Influenza Vaccines Advisory Group.

Vaccine. 2017 Oct 13;35(43):5734-5737. doi: 10.1016/j.vaccine.2017.08.088. Epub 2017 Sep 20.

4.

Getting to the heart of influenza.

Yewdell JW, Spiro DJ, Golding H, Quill H, Mittelman A, Nabel GJ.

Sci Transl Med. 2013 Jun 26;5(191):191ed8. doi: 10.1126/scitranslmed.3006735. No abstract available.

5.

Molecular signature of high yield (growth) influenza a virus reassortants prepared as candidate vaccine seeds.

Ramanunninair M, Le J, Onodera S, Fulvini AA, Pokorny BA, Silverman J, Devis R, Arroyo JM, He Y, Boyne A, Bera J, Halpin R, Hine E, Spiro DJ, Bucher D.

PLoS One. 2013 Jun 11;8(6):e65955. doi: 10.1371/journal.pone.0065955. Print 2013.

6.

Spike protein fusion peptide and feline coronavirus virulence.

Chang HW, Egberink HF, Halpin R, Spiro DJ, Rottier PJ.

Emerg Infect Dis. 2012 Jul;18(7):1089-95. doi: 10.3201/eid1807.120143.

7.

Dual infection of novel influenza viruses A/H1N1 and A/H3N2 in a cluster of Cambodian patients.

Myers CA, Kasper MR, Yasuda CY, Savuth C, Spiro DJ, Halpin R, Faix DJ, Coon R, Putnam SD, Wierzba TF, Blair PJ.

Am J Trop Med Hyg. 2011 Nov;85(5):961-3. doi: 10.4269/ajtmh.2011.11-0098.

8.

Migratory flyway and geographical distance are barriers to the gene flow of influenza virus among North American birds.

Lam TT, Ip HS, Ghedin E, Wentworth DE, Halpin RA, Stockwell TB, Spiro DJ, Dusek RJ, Bortner JB, Hoskins J, Bales BD, Yparraguirre DR, Holmes EC.

Ecol Lett. 2012 Jan;15(1):24-33. doi: 10.1111/j.1461-0248.2011.01703.x. Epub 2011 Oct 18.

9.

Genomic and protein structural maps of adaptive evolution of human influenza A virus to increased virulence in the mouse.

Ping J, Keleta L, Forbes NE, Dankar S, Stecho W, Tyler S, Zhou Y, Babiuk L, Weingartl H, Halpin RA, Boyne A, Bera J, Hostetler J, Fedorova NB, Proudfoot K, Katzel DA, Stockwell TB, Ghedin E, Spiro DJ, Brown EG.

PLoS One. 2011;6(6):e21740. doi: 10.1371/journal.pone.0021740. Epub 2011 Jun 30.

10.

Intra-genotypic diversity of archival G4P[8] human rotaviruses from Washington, DC.

McDonald SM, Davis K, McAllen JK, Spiro DJ, Patton JT.

Infect Genet Evol. 2011 Oct;11(7):1586-94. doi: 10.1016/j.meegid.2011.05.023. Epub 2011 Jun 25.

11.

Molecular characterization of a new species in the genus Alphacoronavirus associated with mink epizootic catarrhal gastroenteritis.

Vlasova AN, Halpin R, Wang S, Ghedin E, Spiro DJ, Saif LJ.

J Gen Virol. 2011 Jun;92(Pt 6):1369-79. doi: 10.1099/vir.0.025353-0. Epub 2011 Feb 23.

12.

Deep sequencing reveals mixed infection with 2009 pandemic influenza A (H1N1) virus strains and the emergence of oseltamivir resistance.

Ghedin E, Laplante J, DePasse J, Wentworth DE, Santos RP, Lepow ML, Porter J, Stellrecht K, Lin X, Operario D, Griesemer S, Fitch A, Halpin RA, Stockwell TB, Spiro DJ, Holmes EC, St George K.

J Infect Dis. 2011 Jan 15;203(2):168-74. doi: 10.1093/infdis/jiq040.

13.

Phylogeography of the spring and fall waves of the H1N1/09 pandemic influenza virus in the United States.

Nelson MI, Tan Y, Ghedin E, Wentworth DE, St George K, Edelman L, Beck ET, Fan J, Lam TT, Kumar S, Spiro DJ, Simonsen L, Viboud C, Holmes EC, Henrickson KJ, Musser JM.

J Virol. 2011 Jan;85(2):828-34. doi: 10.1128/JVI.01762-10. Epub 2010 Nov 10.

14.

PB2 residue 158 is a pathogenic determinant of pandemic H1N1 and H5 influenza a viruses in mice.

Zhou B, Li Y, Halpin R, Hine E, Spiro DJ, Wentworth DE.

J Virol. 2011 Jan;85(1):357-65. doi: 10.1128/JVI.01694-10. Epub 2010 Oct 20.

15.

ANDES: Statistical tools for the ANalyses of DEep Sequencing.

Li K, Venter E, Yooseph S, Stockwell TB, Eckerle LD, Denison MR, Spiro DJ, Methé BA.

BMC Res Notes. 2010 Jul 15;3:199. doi: 10.1186/1756-0500-3-199.

16.

Infidelity of SARS-CoV Nsp14-exonuclease mutant virus replication is revealed by complete genome sequencing.

Eckerle LD, Becker MM, Halpin RA, Li K, Venter E, Lu X, Scherbakova S, Graham RL, Baric RS, Stockwell TB, Spiro DJ, Denison MR.

PLoS Pathog. 2010 May 6;6(5):e1000896. doi: 10.1371/journal.ppat.1000896.

17.

Unseasonal transmission of H3N2 influenza A virus during the swine-origin H1N1 pandemic.

Ghedin E, Wentworth DE, Halpin RA, Lin X, Bera J, DePasse J, Fitch A, Griesemer S, Hine E, Katzel DA, Overton L, Proudfoot K, Sitz J, Szczypinski B, StGeorge K, Spiro DJ, Holmes EC.

J Virol. 2010 Jun;84(11):5715-8. doi: 10.1128/JVI.00018-10. Epub 2010 Mar 17.

18.

Evolutionary dynamics of human rotaviruses: balancing reassortment with preferred genome constellations.

McDonald SM, Matthijnssens J, McAllen JK, Hine E, Overton L, Wang S, Lemey P, Zeller M, Van Ranst M, Spiro DJ, Patton JT.

PLoS Pathog. 2009 Oct;5(10):e1000634. doi: 10.1371/journal.ppat.1000634. Epub 2009 Oct 23.

19.

Metagenomic analysis of RNA viruses in a fresh water lake.

Djikeng A, Kuzmickas R, Anderson NG, Spiro DJ.

PLoS One. 2009 Sep 29;4(9):e7264. doi: 10.1371/journal.pone.0007264.

20.

Mixed infection and the genesis of influenza virus diversity.

Ghedin E, Fitch A, Boyne A, Griesemer S, DePasse J, Bera J, Zhang X, Halpin RA, Smit M, Jennings L, St George K, Holmes EC, Spiro DJ.

J Virol. 2009 Sep;83(17):8832-41. doi: 10.1128/JVI.00773-09. Epub 2009 Jun 24.

21.

Molecular epidemiology of A/H3N2 and A/H1N1 influenza virus during a single epidemic season in the United States.

Nelson MI, Edelman L, Spiro DJ, Boyne AR, Bera J, Halpin R, Sengamalay N, Ghedin E, Miller MA, Simonsen L, Viboud C, Holmes EC.

PLoS Pathog. 2008 Aug 22;4(8):e1000133. doi: 10.1371/journal.ppat.1000133. Erratum in: PLoS Pathog. 2008 Dec;4(12). doi.org//10.1371/annotation/1391941e-93d3-48d3-8c9a-b7c6d98f9527.. Sengamalay, Naomi [added].

22.

The evolutionary genetics and emergence of avian influenza viruses in wild birds.

Dugan VG, Chen R, Spiro DJ, Sengamalay N, Zaborsky J, Ghedin E, Nolting J, Swayne DE, Runstadler JA, Happ GM, Senne DA, Wang R, Slemons RD, Holmes EC, Taubenberger JK.

PLoS Pathog. 2008 May 30;4(5):e1000076. doi: 10.1371/journal.ppat.1000076.

23.

Multiple reassortment events in the evolutionary history of H1N1 influenza A virus since 1918.

Nelson MI, Viboud C, Simonsen L, Bennett RT, Griesemer SB, St George K, Taylor J, Spiro DJ, Sengamalay NA, Ghedin E, Taubenberger JK, Holmes EC.

PLoS Pathog. 2008 Feb 29;4(2):e1000012. doi: 10.1371/journal.ppat.1000012.

24.

Viral genome sequencing by random priming methods.

Djikeng A, Halpin R, Kuzmickas R, Depasse J, Feldblyum J, Sengamalay N, Afonso C, Zhang X, Anderson NG, Ghedin E, Spiro DJ.

BMC Genomics. 2008 Jan 7;9:5. doi: 10.1186/1471-2164-9-5.

25.

Widespread lateral gene transfer from intracellular bacteria to multicellular eukaryotes.

Dunning Hotopp JC, Clark ME, Oliveira DC, Foster JM, Fischer P, Muñoz Torres MC, Giebel JD, Kumar N, Ishmael N, Wang S, Ingram J, Nene RV, Shepard J, Tomkins J, Richards S, Spiro DJ, Ghedin E, Slatko BE, Tettelin H, Werren JH.

Science. 2007 Sep 21;317(5845):1753-6. Epub 2007 Aug 30.

26.

Genome analysis linking recent European and African influenza (H5N1) viruses.

Salzberg SL, Kingsford C, Cattoli G, Spiro DJ, Janies DA, Aly MM, Brown IH, Couacy-Hymann E, De Mia GM, Dung do H, Guercio A, Joannis T, Maken Ali AS, Osmani A, Padalino I, Saad MD, Savić V, Sengamalay NA, Yingst S, Zaborsky J, Zorman-Rojs O, Ghedin E, Capua I.

Emerg Infect Dis. 2007 May;13(5):713-8.

27.

Stochastic processes are key determinants of short-term evolution in influenza a virus.

Nelson MI, Simonsen L, Viboud C, Miller MA, Taylor J, George KS, Griesemer SB, Ghedin E, Sengamalay NA, Spiro DJ, Volkov I, Grenfell BT, Lipman DJ, Taubenberger JK, Holmes EC.

PLoS Pathog. 2006 Dec;2(12):e125. Erratum in: PLoS Pathog. 2006 Dec;2(12):e138. Ghedi, Elodie [corrected to Ghedin, Elodie].

28.

Large-scale sequencing of human influenza reveals the dynamic nature of viral genome evolution.

Ghedin E, Sengamalay NA, Shumway M, Zaborsky J, Feldblyum T, Subbu V, Spiro DJ, Sitz J, Koo H, Bolotov P, Dernovoy D, Tatusova T, Bao Y, St George K, Taylor J, Lipman DJ, Fraser CM, Taubenberger JK, Salzberg SL.

Nature. 2005 Oct 20;437(7062):1162-6. Epub 2005 Oct 5.

PMID:
16208317
29.

Studies on the inhibition of endosome fusion by GTPgammaS-bound ARF.

Jones AT, Spiro DJ, Kirchhausen T, Melançon P, Wessling-Resnick M.

J Cell Sci. 1999 Oct;112 ( Pt 20):3477-85.

30.

Rab11 is associated with transferrin-containing recycling compartments in K562 cells.

Green EG, Ramm E, Riley NM, Spiro DJ, Goldenring JR, Wessling-Resnick M.

Biochem Biophys Res Commun. 1997 Oct 20;239(2):612-6.

PMID:
9344879
31.

Wortmannin alters the transferrin receptor endocytic pathway in vivo and in vitro.

Spiro DJ, Boll W, Kirchhausen T, Wessling-Resnick M.

Mol Biol Cell. 1996 Mar;7(3):355-67.

32.
33.

Performance on a stage IV object-permanence task with standard and nonstandard covers.

Rader N, Spiro DJ, Firestone PB.

Child Dev. 1979 Sep;50(3):908-10.

PMID:
498862

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