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Items: 40

1.

Adaptability as the key to success for the ubiquitous marine nitrite oxidizer Nitrococcus.

Füssel J, Lücker S, Yilmaz P, Nowka B, van Kessel MAHJ, Bourceau P, Hach PF, Littmann S, Berg J, Spieck E, Daims H, Kuypers MMM, Lam P.

Sci Adv. 2017 Nov 1;3(11):e1700807. doi: 10.1126/sciadv.1700807. eCollection 2017 Nov.

2.

Acyl-Homoserine Lactone Production in Nitrifying Bacteria of the Genera Nitrosospira, Nitrobacter, and Nitrospira Identified via a Survey of Putative Quorum-Sensing Genes.

Mellbye BL, Spieck E, Bottomley PJ, Sayavedra-Soto LA.

Appl Environ Microbiol. 2017 Oct 31;83(22). pii: e01540-17. doi: 10.1128/AEM.01540-17. Print 2017 Nov 15.

3.

Draft Genome Sequence of Nitrobacter vulgaris Strain Ab1, a Nitrite-Oxidizing Bacterium.

Mellbye BL, Davis EW 2nd, Spieck E, Chang JH, Bottomley PJ, Sayavedra-Soto LA.

Genome Announc. 2017 May 4;5(18). pii: e00290-17. doi: 10.1128/genomeA.00290-17.

4.

Chemotaxonomic characterisation of the thaumarchaeal lipidome.

Elling FJ, Könneke M, Nicol GW, Stieglmeier M, Bayer B, Spieck E, de la Torre JR, Becker KW, Thomm M, Prosser JI, Herndl GJ, Schleper C, Hinrichs KU.

Environ Microbiol. 2017 Jul;19(7):2681-2700. doi: 10.1111/1462-2920.13759. Epub 2017 May 19.

PMID:
28419726
5.

A robust nitrifying community in a bioreactor at 50 °C opens up the path for thermophilic nitrogen removal.

Courtens EN, Spieck E, Vilchez-Vargas R, Bodé S, Boeckx P, Schouten S, Jauregui R, Pieper DH, Vlaeminck SE, Boon N.

ISME J. 2016 Sep;10(9):2293-303. doi: 10.1038/ismej.2016.8. Epub 2016 Feb 19.

6.

Relative Abundance of Nitrotoga spp. in a Biofilter of a Cold-Freshwater Aquaculture Plant Appears To Be Stimulated by Slightly Acidic pH.

Hüpeden J, Wegen S, Off S, Lücker S, Bedarf Y, Daims H, Kühn C, Spieck E.

Appl Environ Microbiol. 2016 Jan 8;82(6):1838-45. doi: 10.1128/AEM.03163-15.

7.

Expanded metabolic versatility of ubiquitous nitrite-oxidizing bacteria from the genus Nitrospira.

Koch H, Lücker S, Albertsen M, Kitzinger K, Herbold C, Spieck E, Nielsen PH, Wagner M, Daims H.

Proc Natl Acad Sci U S A. 2015 Sep 8;112(36):11371-6. doi: 10.1073/pnas.1506533112. Epub 2015 Aug 24.

8.

Improved isolation strategies allowed the phenotypic differentiation of two Nitrospira strains from widespread phylogenetic lineages.

Nowka B, Off S, Daims H, Spieck E.

FEMS Microbiol Ecol. 2015 Mar;91(3). pii: fiu031. doi: 10.1093/femsec/fiu031. Epub 2014 Dec 20.

9.

Comparison of oxidation kinetics of nitrite-oxidizing bacteria: nitrite availability as a key factor in niche differentiation.

Nowka B, Daims H, Spieck E.

Appl Environ Microbiol. 2015 Jan;81(2):745-53. doi: 10.1128/AEM.02734-14. Epub 2014 Nov 14.

10.

Nitrotoga-like bacteria are previously unrecognized key nitrite oxidizers in full-scale wastewater treatment plants.

Lücker S, Schwarz J, Gruber-Dorninger C, Spieck E, Wagner M, Daims H.

ISME J. 2015 Mar;9(3):708-20. doi: 10.1038/ismej.2014.158. Epub 2014 Sep 2.

11.

Growth of nitrite-oxidizing bacteria by aerobic hydrogen oxidation.

Koch H, Galushko A, Albertsen M, Schintlmeister A, Gruber-Dorninger C, Lücker S, Pelletier E, Le Paslier D, Spieck E, Richter A, Nielsen PH, Wagner M, Daims H.

Science. 2014 Aug 29;345(6200):1052-4. doi: 10.1126/science.1256985.

12.

Characterization of a new marine nitrite oxidizing bacterium, Nitrospina watsonii sp. nov., a member of the newly proposed phylum "Nitrospinae".

Spieck E, Keuter S, Wenzel T, Bock E, Ludwig W.

Syst Appl Microbiol. 2014 May;37(3):170-6. doi: 10.1016/j.syapm.2013.12.005. Epub 2014 Feb 24.

PMID:
24581679
13.

NxrB encoding the beta subunit of nitrite oxidoreductase as functional and phylogenetic marker for nitrite-oxidizing Nitrospira.

Pester M, Maixner F, Berry D, Rattei T, Koch H, Lücker S, Nowka B, Richter A, Spieck E, Lebedeva E, Loy A, Wagner M, Daims H.

Environ Microbiol. 2014 Oct;16(10):3055-71. doi: 10.1111/1462-2920.12300. Epub 2013 Nov 8.

PMID:
24118804
14.

A generally applicable cryopreservation method for nitrite-oxidizing bacteria.

Vekeman B, Hoefman S, De Vos P, Spieck E, Heylen K.

Syst Appl Microbiol. 2013 Dec;36(8):579-84. doi: 10.1016/j.syapm.2013.07.002. Epub 2013 Aug 22.

PMID:
23973199
15.

The nitrite-oxidizing community in activated sludge from a municipal wastewater treatment plant determined by fatty acid methyl ester-stable isotope probing.

Kruse M, Zumbrägel S, Bakker E, Spieck E, Eggers T, Lipski A.

Syst Appl Microbiol. 2013 Oct;36(7):517-24. doi: 10.1016/j.syapm.2013.06.007. Epub 2013 Aug 4.

PMID:
23921154
16.

Relevance and diversity of Nitrospira populations in biofilters of brackish RAS.

Kruse M, Keuter S, Bakker E, Spieck E, Eggers T, Lipski A.

PLoS One. 2013 May 21;8(5):e64737. doi: 10.1371/journal.pone.0064737. Print 2013.

17.

The Genome of Nitrospina gracilis Illuminates the Metabolism and Evolution of the Major Marine Nitrite Oxidizer.

Lücker S, Nowka B, Rattei T, Spieck E, Daims H.

Front Microbiol. 2013 Feb 21;4:27. doi: 10.3389/fmicb.2013.00027. eCollection 2013.

18.

Sequencing orphan species initiative (SOS): Filling the gaps in the 16S rRNA gene sequence database for all species with validly published names.

Yarza P, Spröer C, Swiderski J, Mrotzek N, Spring S, Tindall BJ, Gronow S, Pukall R, Klenk HP, Lang E, Verbarg S, Crouch A, Lilburn T, Beck B, Unosson C, Cardew S, Moore ER, Gomila M, Nakagawa Y, Janssens D, De Vos P, Peiren J, Suttels T, Clermont D, Bizet C, Sakamoto M, Iida T, Kudo T, Kosako Y, Oshida Y, Ohkuma M, R Arahal D, Spieck E, Pommerening Roeser A, Figge M, Park D, Buchanan P, Cifuentes A, Munoz R, Euzéby JP, Schleifer KH, Ludwig W, Amann R, Glöckner FO, Rosselló-Móra R.

Syst Appl Microbiol. 2013 Feb;36(1):69-73. doi: 10.1016/j.syapm.2012.12.006. Epub 2013 Feb 11. Review.

PMID:
23410935
19.

The Janthinobacterium sp. HH01 genome encodes a homologue of the V. cholerae CqsA and L. pneumophila LqsA autoinducer synthases.

Hornung C, Poehlein A, Haack FS, Schmidt M, Dierking K, Pohlen A, Schulenburg H, Blokesch M, Plener L, Jung K, Bonge A, Krohn-Molt I, Utpatel C, Timmermann G, Spieck E, Pommerening-Röser A, Bode E, Bode HB, Daniel R, Schmeisser C, Streit WR.

PLoS One. 2013;8(2):e55045. doi: 10.1371/journal.pone.0055045. Epub 2013 Feb 6.

20.

The genome of the ammonia-oxidizing Candidatus Nitrososphaera gargensis: insights into metabolic versatility and environmental adaptations.

Spang A, Poehlein A, Offre P, Zumbrägel S, Haider S, Rychlik N, Nowka B, Schmeisser C, Lebedeva EV, Rattei T, Böhm C, Schmid M, Galushko A, Hatzenpichler R, Weinmaier T, Daniel R, Schleper C, Spieck E, Streit W, Wagner M.

Environ Microbiol. 2012 Dec;14(12):3122-45. doi: 10.1111/j.1462-2920.2012.02893.x. Epub 2012 Oct 12.

PMID:
23057602
21.

Relevance of Nitrospira for nitrite oxidation in a marine recirculation aquaculture system and physiological features of a Nitrospira marina-like isolate.

Keuter S, Kruse M, Lipski A, Spieck E.

Environ Microbiol. 2011 Sep;13(9):2536-47. doi: 10.1111/j.1462-2920.2011.02525.x. Epub 2011 Aug 4.

PMID:
21812886
22.

Cultivation, growth physiology, and chemotaxonomy of nitrite-oxidizing bacteria.

Spieck E, Lipski A.

Methods Enzymol. 2011;486:109-30. doi: 10.1016/B978-0-12-381294-0.00005-5.

PMID:
21185433
23.

Isolation and characterization of a moderately thermophilic nitrite-oxidizing bacterium from a geothermal spring.

Lebedeva EV, Off S, Zumbrägel S, Kruse M, Shagzhina A, Lücker S, Maixner F, Lipski A, Daims H, Spieck E.

FEMS Microbiol Ecol. 2011 Feb;75(2):195-204. doi: 10.1111/j.1574-6941.2010.01006.x. Epub 2010 Dec 8.

24.

A Nitrospira metagenome illuminates the physiology and evolution of globally important nitrite-oxidizing bacteria.

Lücker S, Wagner M, Maixner F, Pelletier E, Koch H, Vacherie B, Rattei T, Damsté JS, Spieck E, Le Paslier D, Daims H.

Proc Natl Acad Sci U S A. 2010 Jul 27;107(30):13479-84. doi: 10.1073/pnas.1003860107. Epub 2010 Jul 12.

25.

Distinct gene set in two different lineages of ammonia-oxidizing archaea supports the phylum Thaumarchaeota.

Spang A, Hatzenpichler R, Brochier-Armanet C, Rattei T, Tischler P, Spieck E, Streit W, Stahl DA, Wagner M, Schleper C.

Trends Microbiol. 2010 Aug;18(8):331-40. doi: 10.1016/j.tim.2010.06.003. Epub 2010 Jul 2.

PMID:
20598889
26.

Enrichment and physiological characterization of a novel Nitrospira-like bacterium obtained from a marine sponge.

Off S, Alawi M, Spieck E.

Appl Environ Microbiol. 2010 Jul;76(14):4640-6. doi: 10.1128/AEM.00320-10. Epub 2010 May 28.

27.

Crenarchaeol dominates the membrane lipids of Candidatus Nitrososphaera gargensis, a thermophilic group I.1b Archaeon.

Pitcher A, Rychlik N, Hopmans EC, Spieck E, Rijpstra WI, Ossebaar J, Schouten S, Wagner M, Damsté JS.

ISME J. 2010 Apr;4(4):542-52. doi: 10.1038/ismej.2009.138. Epub 2009 Dec 24.

PMID:
20033067
28.

Temperature influences the population structure of nitrite-oxidizing bacteria in activated sludge.

Alawi M, Off S, Kaya M, Spieck E.

Environ Microbiol Rep. 2009 Jun;1(3):184-90. doi: 10.1111/j.1758-2229.2009.00029.x. Epub 2009 Apr 6.

PMID:
23765792
29.

Environmental genomics reveals a functional chlorite dismutase in the nitrite-oxidizing bacterium 'Candidatus Nitrospira defluvii'.

Maixner F, Wagner M, Lücker S, Pelletier E, Schmitz-Esser S, Hace K, Spieck E, Konrat R, Le Paslier D, Daims H.

Environ Microbiol. 2008 Nov;10(11):3043-56. doi: 10.1111/j.1462-2920.2008.01646.x. Epub 2008 May 5.

PMID:
18459973
30.

A moderately thermophilic ammonia-oxidizing crenarchaeote from a hot spring.

Hatzenpichler R, Lebedeva EV, Spieck E, Stoecker K, Richter A, Daims H, Wagner M.

Proc Natl Acad Sci U S A. 2008 Feb 12;105(6):2134-9. doi: 10.1073/pnas.0708857105. Epub 2008 Feb 4.

31.

Physiological and phylogenetic characterization of a novel lithoautotrophic nitrite-oxidizing bacterium, 'Candidatus Nitrospira bockiana'.

Lebedeva EV, Alawi M, Maixner F, Jozsa PG, Daims H, Spieck E.

Int J Syst Evol Microbiol. 2008 Jan;58(Pt 1):242-50. doi: 10.1099/ijs.0.65379-0.

PMID:
18175716
32.

Cultivation of a novel cold-adapted nitrite oxidizing betaproteobacterium from the Siberian Arctic.

Alawi M, Lipski A, Sanders T, Pfeiffer EM, Spieck E.

ISME J. 2007 Jul;1(3):256-64.

PMID:
18062041
33.

The phylogeny of the genus Nitrobacter based on comparative rep-PCR, 16S rRNA and nitrite oxidoreductase gene sequence analysis.

Vanparys B, Spieck E, Heylen K, Wittebolle L, Geets J, Boon N, De Vos P.

Syst Appl Microbiol. 2007 Jun;30(4):297-308. Epub 2007 Jan 8.

PMID:
17208402
34.

Selective enrichment and molecular characterization of a previously uncultured Nitrospira-like bacterium from activated sludge.

Spieck E, Hartwig C, McCormack I, Maixner F, Wagner M, Lipski A, Daims H.

Environ Microbiol. 2006 Mar;8(3):405-15.

PMID:
16478447
35.

Moderately thermophilic nitrifying bacteria from a hot spring of the Baikal rift zone.

Lebedeva EV, Alawi M, Fiencke C, Namsaraev B, Bock E, Spieck E.

FEMS Microbiol Ecol. 2005 Oct 1;54(2):297-306. Epub 2005 May 31.

36.

Immunological detection of Nitrospira-like bacteria in various soils.

Bartosch S, Hartwig C, Spieck E, Bock E.

Microb Ecol. 2002 Jan;43(1):26-33. Epub 2001 Dec 7.

PMID:
11984626
37.

Fatty acid profiles of nitrite-oxidizing bacteria reflect their phylogenetic heterogeneity.

Lipski A, Spieck E, Makolla A, Altendorf K.

Syst Appl Microbiol. 2001 Nov;24(3):377-84.

PMID:
11822673
38.

Identification of nitrite-oxidizing bacteria with monoclonal antibodies recognizing the nitrite oxidoreductase.

Bartosch S, Wolgast I, Spieck E, Bock E.

Appl Environ Microbiol. 1999 Sep;65(9):4126-33.

39.

Isolation and immunocytochemical location of the nitrite-oxidizing system in nitrospira moscoviensis

Spieck E, Ehrich S, Aamand J, Bock E.

Arch Microbiol. 1998 Mar;169(3):225-30.

PMID:
9477257
40.

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