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Items: 30

1.

Methylotetracoccus oryzae Strain C50C1 Is a Novel Type Ib Gammaproteobacterial Methanotroph Adapted to Freshwater Environments.

Ghashghavi M, Belova SE, Bodelier PLE, Dedysh SN, Kox MAR, Speth DR, Frenzel P, Jetten MSM, Lücker S, Lüke C.

mSphere. 2019 Jun 5;4(3). pii: e00631-18. doi: 10.1128/mSphere.00631-18.

3.

Comparative Genomics of Candidatus Methylomirabilis Species and Description of Ca. Methylomirabilis Lanthanidiphila.

Versantvoort W, Guerrero-Cruz S, Speth DR, Frank J, Gambelli L, Cremers G, van Alen T, Jetten MSM, Kartal B, Op den Camp HJM, Reimann J.

Front Microbiol. 2018 Jul 24;9:1672. doi: 10.3389/fmicb.2018.01672. eCollection 2018.

4.

Correction for Brigham et al., "Whole-Genome Microarray and Gene Deletion Studies Reveal Regulation of the Polyhydroxyalkanoate Production Cycle by the Stringent Response in Ralstonia eutropha H16".

Brigham CJ, Speth DR, Rha C, Sinskey AJ.

Appl Environ Microbiol. 2017 Jul 17;83(15). pii: e01216-17. doi: 10.1128/AEM.01216-17. Print 2017 Aug 1. No abstract available.

5.

Draft Genome of Scalindua rubra, Obtained from the Interface Above the Discovery Deep Brine in the Red Sea, Sheds Light on Potential Salt Adaptation Strategies in Anammox Bacteria.

Speth DR, Lagkouvardos I, Wang Y, Qian PY, Dutilh BE, Jetten MSM.

Microb Ecol. 2017 Jul;74(1):1-5. doi: 10.1007/s00248-017-0929-7. Epub 2017 Jan 10.

6.

Archaea catalyze iron-dependent anaerobic oxidation of methane.

Ettwig KF, Zhu B, Speth D, Keltjens JT, Jetten MSM, Kartal B.

Proc Natl Acad Sci U S A. 2016 Nov 8;113(45):12792-12796. doi: 10.1073/pnas.1609534113. Epub 2016 Oct 24.

7.

Genome Characteristics of Two Novel Type I Methanotrophs Enriched from North Sea Sediments Containing Exclusively a Lanthanide-Dependent XoxF5-Type Methanol Dehydrogenase.

Vekeman B, Speth D, Wille J, Cremers G, De Vos P, Op den Camp HJ, Heylen K.

Microb Ecol. 2016 Oct;72(3):503-9. doi: 10.1007/s00248-016-0808-7. Epub 2016 Jul 25.

PMID:
27457652
8.

Metagenomic analysis of nitrogen and methane cycling in the Arabian Sea oxygen minimum zone.

Lüke C, Speth DR, Kox MAR, Villanueva L, Jetten MSM.

PeerJ. 2016 Apr 7;4:e1924. doi: 10.7717/peerj.1924. eCollection 2016.

9.

Genome-based microbial ecology of anammox granules in a full-scale wastewater treatment system.

Speth DR, In 't Zandt MH, Guerrero-Cruz S, Dutilh BE, Jetten MS.

Nat Commun. 2016 Mar 31;7:11172. doi: 10.1038/ncomms11172.

10.

A Metagenomics-Based Metabolic Model of Nitrate-Dependent Anaerobic Oxidation of Methane by Methanoperedens-Like Archaea.

Arshad A, Speth DR, de Graaf RM, Op den Camp HJ, Jetten MS, Welte CU.

Front Microbiol. 2015 Dec 18;6:1423. doi: 10.3389/fmicb.2015.01423. eCollection 2015.

11.

Complete nitrification by a single microorganism.

van Kessel MA, Speth DR, Albertsen M, Nielsen PH, Op den Camp HJ, Kartal B, Jetten MS, Lücker S.

Nature. 2015 Dec 24;528(7583):555-9. doi: 10.1038/nature16459. Epub 2015 Nov 26.

12.

Draft Genome Sequence of Anammox Bacterium "Candidatus Scalindua brodae," Obtained Using Differential Coverage Binning of Sequencing Data from Two Reactor Enrichments.

Speth DR, Russ L, Kartal B, Op den Camp HJ, Dutilh BE, Jetten MS.

Genome Announc. 2015 Jan 8;3(1). pii: e01415-14. doi: 10.1128/genomeA.01415-14.

13.

A highly abundant bacteriophage discovered in the unknown sequences of human faecal metagenomes.

Dutilh BE, Cassman N, McNair K, Sanchez SE, Silva GG, Boling L, Barr JJ, Speth DR, Seguritan V, Aziz RK, Felts B, Dinsdale EA, Mokili JL, Edwards RA.

Nat Commun. 2014 Jul 24;5:4498. doi: 10.1038/ncomms5498.

14.

Interactions between anaerobic ammonium and sulfur-oxidizing bacteria in a laboratory scale model system.

Russ L, Speth DR, Jetten MS, Op den Camp HJ, Kartal B.

Environ Microbiol. 2014 Nov;16(11):3487-98. doi: 10.1111/1462-2920.12487. Epub 2014 May 20.

PMID:
24750895
15.

Shotgun metagenomic data reveals significant abundance but low diversity of "Candidatus Scalindua" marine anammox bacteria in the Arabian Sea oxygen minimum zone.

Villanueva L, Speth DR, van Alen T, Hoischen A, Jetten MS.

Front Microbiol. 2014 Feb 5;5:31. doi: 10.3389/fmicb.2014.00031. eCollection 2014.

16.

Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.

Ferousi C, Speth DR, Reimann J, Op den Camp HJ, Allen JW, Keltjens JT, Jetten MS.

BMC Microbiol. 2013 Nov 23;13:265. doi: 10.1186/1471-2180-13-265.

17.

A new addition to the cell plan of anammox bacteria: "Candidatus Kuenenia stuttgartiensis" has a protein surface layer as the outermost layer of the cell.

van Teeseling MC, de Almeida NM, Klingl A, Speth DR, Op den Camp HJ, Rachel R, Jetten MS, van Niftrik L.

J Bacteriol. 2014 Jan;196(1):80-9. doi: 10.1128/JB.00988-13. Epub 2013 Oct 18.

18.

A novel marine nitrite-oxidizing Nitrospira species from Dutch coastal North Sea water.

Haaijer SC, Ji K, van Niftrik L, Hoischen A, Speth D, Jetten MS, Damsté JS, Op den Camp HJ.

Front Microbiol. 2013 Mar 18;4:60. doi: 10.3389/fmicb.2013.00060. eCollection 2013.

19.

Metagenome Analysis of a Complex Community Reveals the Metabolic Blueprint of Anammox Bacterium "Candidatus Jettenia asiatica".

Hu Z, Speth DR, Francoijs KJ, Quan ZX, Jetten MS.

Front Microbiol. 2012 Oct 29;3:366. doi: 10.3389/fmicb.2012.00366. eCollection 2012.

20.

Whole-genome microarray and gene deletion studies reveal regulation of the polyhydroxyalkanoate production cycle by the stringent response in Ralstonia eutropha H16.

Brigham CJ, Speth DR, Rha C, Sinskey AJ.

Appl Environ Microbiol. 2012 Nov;78(22):8033-44. doi: 10.1128/AEM.01693-12. Epub 2012 Sep 7. Erratum in: Appl Environ Microbiol. 2017 Jul 17;83(15):.

21.

Comparative genomics of two independently enriched "candidatus kuenenia stuttgartiensis" anammox bacteria.

Speth DR, Hu B, Bosch N, Keltjens JT, Stunnenberg HG, Jetten MS.

Front Microbiol. 2012 Aug 21;3:307. doi: 10.3389/fmicb.2012.00307. eCollection 2012.

22.

Genomic analysis indicates the presence of an asymmetric bilayer outer membrane in planctomycetes and verrucomicrobia.

Speth DR, van Teeseling MC, Jetten MS.

Front Microbiol. 2012 Aug 20;3:304. doi: 10.3389/fmicb.2012.00304. eCollection 2012.

23.

Bacterial oxygen production in the dark.

Ettwig KF, Speth DR, Reimann J, Wu ML, Jetten MS, Keltjens JT.

Front Microbiol. 2012 Aug 7;3:273. doi: 10.3389/fmicb.2012.00273. eCollection 2012.

24.

The metagenome of the marine anammox bacterium 'Candidatus Scalindua profunda' illustrates the versatility of this globally important nitrogen cycle bacterium.

van de Vossenberg J, Woebken D, Maalcke WJ, Wessels HJ, Dutilh BE, Kartal B, Janssen-Megens EM, Roeselers G, Yan J, Speth D, Gloerich J, Geerts W, van der Biezen E, Pluk W, Francoijs KJ, Russ L, Lam P, Malfatti SA, Tringe SG, Haaijer SC, Op den Camp HJ, Stunnenberg HG, Amann R, Kuypers MM, Jetten MS.

Environ Microbiol. 2013 May;15(5):1275-89. doi: 10.1111/j.1462-2920.2012.02774.x. Epub 2012 May 9.

25.

Automated analysis of medical text. II. Cognitive strategy.

Gabrieli ER, Speth DJ.

J Med Syst. 1991 Feb;15(1):65-78.

PMID:
1748850
26.

Automated analysis of medical text. I. Clue gathering.

Gabrieli ER, Speth DJ.

J Med Syst. 1990 Apr;14(1-2):71-91.

PMID:
2373972
27.

Automated analysis of the discharge summary.

Gabrieli ER, Speth DJ.

J Clin Comput. 1986;15(1):1-28. No abstract available.

PMID:
10279021
28.

Knowledge bases.

Gabrieli ER, Speth DJ, Casiraghi E.

J Clin Comput. 1985;13(5):150-4. No abstract available.

PMID:
10274598
29.

Cognitive processing for computerized new knowledge.

Gabrieli ER, Speth D, Casiraghi E.

J Clin Comput. 1985;13(4):113-6. No abstract available.

PMID:
10272778
30.

Implementation and use of a computerized abbreviation directory.

Speth DJ.

J Clin Comput. 1984;12(5):155-77. No abstract available.

PMID:
10318572

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