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Items: 25

1.

Bioluminescent flashes drive nighttime schooling behavior and synchronized swimming dynamics in flashlight fish.

Gruber DF, Phillips BT, O'Brien R, Boominathan V, Veeraraghavan A, Vasan G, O'Brien P, Pieribone VA, Sparks JS.

PLoS One. 2019 Aug 14;14(8):e0219852. doi: 10.1371/journal.pone.0219852. eCollection 2019.

2.

Phylogenomic analysis on the exceptionally diverse fish clade Gobioidei (Actinopterygii: Gobiiformes) and data-filtering based on molecular clocklikeness.

Kuang T, Tornabene L, Li J, Jiang J, Chakrabarty P, Sparks JS, Naylor GJP, Li C.

Mol Phylogenet Evol. 2018 Nov;128:192-202. doi: 10.1016/j.ympev.2018.07.018. Epub 2018 Jul 20.

PMID:
30036699
3.

Malagasy cichlids differentially limit impacts of body shape evolution on oral jaw functional morphology.

Martinez CM, Sparks JS.

Evolution. 2017 Sep;71(9):2219-2229. doi: 10.1111/evo.13298. Epub 2017 Jul 11.

PMID:
28640393
4.

Repeated and Widespread Evolution of Bioluminescence in Marine Fishes.

Davis MP, Sparks JS, Smith WL.

PLoS One. 2016 Jun 8;11(6):e0155154. doi: 10.1371/journal.pone.0155154. eCollection 2016.

5.

Biofluorescence in Catsharks (Scyliorhinidae): Fundamental Description and Relevance for Elasmobranch Visual Ecology.

Gruber DF, Loew ER, Deheyn DD, Akkaynak D, Gaffney JP, Smith WL, Davis MP, Stern JH, Pieribone VA, Sparks JS.

Sci Rep. 2016 Apr 25;6:24751. doi: 10.1038/srep24751.

6.

A new species of Ptychochromis from southeastern Madagascar (Teleostei: Cichlidae).

Martinez CM, Arroyave J, Sparks JS.

Zootaxa. 2015 Nov 17;4044(1):79-92. doi: 10.11646/zootaxa.4044.1.4.

PMID:
26624703
7.

Adaptive Evolution of Eel Fluorescent Proteins from Fatty Acid Binding Proteins Produces Bright Fluorescence in the Marine Environment.

Gruber DF, Gaffney JP, Mehr S, DeSalle R, Sparks JS, Platisa J, Pieribone VA.

PLoS One. 2015 Nov 11;10(11):e0140972. doi: 10.1371/journal.pone.0140972. eCollection 2015.

8.

Formalizing the names of subfamilies and tribes of ponyfishes (Leiognathidae Gill 1893).

Chakrabarty P, Sparks JS.

Zootaxa. 2015 Jun 2;3964(2):298-9. doi: 10.11646/zootaxa.3964.2.10.

PMID:
26249439
9.

Description of a new genus of ponyfishes (Teleostei: Leiognathidae), with a review of the current generic-level composition of the family.

Sparks JS, Chakrabarty P.

Zootaxa. 2015 Apr 15;3947(2):181-90. doi: 10.11646/zootaxa.3947.2.2. Review.

PMID:
25947728
10.

Species-specific bioluminescence facilitates speciation in the deep sea.

Davis MP, Holcroft NI, Wiley EO, Sparks JS, Leo Smith W.

Mar Biol. 2014;161(5):1139-1148. Epub 2014 Feb 21.

11.

The covert world of fish biofluorescence: a phylogenetically widespread and phenotypically variable phenomenon.

Sparks JS, Schelly RC, Smith WL, Davis MP, Tchernov D, Pieribone VA, Gruber DF.

PLoS One. 2014 Jan 8;9(1):e83259. doi: 10.1371/journal.pone.0083259. eCollection 2014.

12.

Temporal patterns of diversification across global cichlid biodiversity (Acanthomorpha: Cichlidae).

McMahan CD, Chakrabarty P, Sparks JS, Smith WM, Davis MP.

PLoS One. 2013 Aug 19;8(8):e71162. doi: 10.1371/journal.pone.0071162. eCollection 2013.

13.

The first record of a trans-oceanic sister-group relationship between obligate vertebrate troglobites.

Chakrabarty P, Davis MP, Sparks JS.

PLoS One. 2012;7(8):e44083. doi: 10.1371/journal.pone.0044083. Epub 2012 Aug 28.

14.

The evolution of pharyngognathy: a phylogenetic and functional appraisal of the pharyngeal jaw key innovation in labroid fishes and beyond.

Wainwright PC, Smith WL, Price SA, Tang KL, Sparks JS, Ferry LA, Kuhn KL, Eytan RI, Near TJ.

Syst Biol. 2012 Dec 1;61(6):1001-27. doi: 10.1093/sysbio/sys060. Epub 2012 Jun 27.

PMID:
22744773
15.

Is sexual selection driving diversification of the bioluminescent ponyfishes (Teleostei: Leiognathidae)?

Chakrabarty P, Davis MP, Smith WL, Baldwin ZH, Sparks JS.

Mol Ecol. 2011 Jul;20(13):2818-34. doi: 10.1111/j.1365-294X.2011.05112.x. Epub 2011 May 30.

PMID:
21623980
16.

Evolution of the light organ system in ponyfishes (Teleostei: Leiognathidae).

Chakrabarty P, Davis MP, Smith WL, Berquist R, Gledhill KM, Frank LR, Sparks JS.

J Morphol. 2011 Jun;272(6):704-21. doi: 10.1002/jmor.10941. Epub 2011 Mar 23.

PMID:
21433053
17.

Review of the Halieutichthys aculeatus species complex (Lophiiformes: Ogcocephalidae), with descriptions of two new species.

Ho HC, Chakrabarty P, Sparks JS.

J Fish Biol. 2010 Sep;77(4):841-69. doi: 10.1111/j.1095-8649.2010.02716.x.

PMID:
20840615
18.

Murine hepatitis virus nonstructural protein 4 regulates virus-induced membrane modifications and replication complex function.

Gadlage MJ, Sparks JS, Beachboard DC, Cox RG, Doyle JD, Stobart CC, Denison MR.

J Virol. 2010 Jan;84(1):280-90. doi: 10.1128/JVI.01772-09.

19.

A novel mutation in murine hepatitis virus nsp5, the viral 3C-like proteinase, causes temperature-sensitive defects in viral growth and protein processing.

Sparks JS, Donaldson EF, Lu X, Baric RS, Denison MR.

J Virol. 2008 Jun;82(12):5999-6008. doi: 10.1128/JVI.00203-08. Epub 2008 Apr 2.

20.

Genetic analysis of Murine hepatitis virus nsp4 in virus replication.

Sparks JS, Lu X, Denison MR.

J Virol. 2007 Nov;81(22):12554-63. Epub 2007 Sep 12.

21.

SARS coronavirus replicase proteins in pathogenesis.

Graham RL, Sparks JS, Eckerle LD, Sims AC, Denison MR.

Virus Res. 2008 Apr;133(1):88-100. Epub 2007 Mar 29.

22.

Gobius lagocephalus: the world's most widespread nomen dubium.

Smith WL, Sparks JS.

Mol Phylogenet Evol. 2007 May;43(2):696-8. Epub 2006 Sep 27. No abstract available.

PMID:
17127081
23.

Sicyopterus lagocephalus: widespread species, species complex, or neither? A critique on the use of molecular data for species identification.

Sparks JS, Smith WL.

Mol Phylogenet Evol. 2006 Sep;40(3):900-2. Epub 2006 May 22. No abstract available.

PMID:
16806991
25.

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