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Items: 1 to 50 of 136

1.

Microbial Enrichment Culture Responsible for the Complete Oxidative Biodegradation of 3-Amino-1,2,4-triazol-5-one (ATO), the Reduced Daughter Product of the Insensitive Munitions Compound 3-Nitro-1,2,4-triazol-5-one (NTO).

Madeira CL, Jog KV, Vanover ET, Brooks MD, Taylor DK, Sierra-Alvarez R, Waidner LA, Spain JC, Krzmarzick MJ, Field JA.

Environ Sci Technol. 2019 Nov 5;53(21):12648-12656. doi: 10.1021/acs.est.9b04065. Epub 2019 Oct 8.

PMID:
31553579
2.

Aerobic biodegradation of 2,3- and 3,4-dichloronitrobenzene.

Palatucci ML, Waidner LA, Mack EE, Spain JC.

J Hazard Mater. 2019 Oct 15;378:120717. doi: 10.1016/j.jhazmat.2019.05.110. Epub 2019 May 31.

PMID:
31203117
3.

"Candidatus Macondimonas diazotrophica", a novel gammaproteobacterial genus dominating crude-oil-contaminated coastal sediments.

Karthikeyan S, Rodriguez-R LM, Heritier-Robbins P, Kim M, Overholt WA, Gaby JC, Hatt JK, Spain JC, Rosselló-Móra R, Huettel M, Kostka JE, Konstantinidis KT.

ISME J. 2019 Aug;13(8):2129-2134. doi: 10.1038/s41396-019-0400-5. Epub 2019 Apr 5.

PMID:
30952995
4.

Biodegradation of the Allelopathic Chemical Pterostilbene by a Sphingobium sp. Strain from the Peanut Rhizosphere.

Yu RQ, Kurt Z, He F, Spain JC.

Appl Environ Microbiol. 2019 Feb 20;85(5). pii: e02154-18. doi: 10.1128/AEM.02154-18. Print 2019 Mar 1.

5.

The molecular basis for the intramolecular migration (NIH shift) of the carboxyl group during para-hydroxybenzoate catabolism.

Zhao H, Xu Y, Lin S, Spain JC, Zhou NY.

Mol Microbiol. 2018 Nov;110(3):411-424. doi: 10.1111/mmi.14094. Epub 2018 Oct 15.

PMID:
30070064
6.

Resveratrol as a Growth Substrate for Bacteria from the Rhizosphere.

Kurt Z, Minoia M, Spain JC.

Appl Environ Microbiol. 2018 May 1;84(10). pii: e00104-18. doi: 10.1128/AEM.00104-18. Print 2018 May 15.

7.

Branched pathways in the degradation of cDCE by cytochrome P450 in Polaromonas sp. JS666.

Mundle SOC, Spain JC, Lacrampe-Couloume G, Nishino SF, Sherwood Lollar B.

Sci Total Environ. 2017 Dec 15;605-606:99-105. doi: 10.1016/j.scitotenv.2017.06.166. Epub 2017 Jun 26.

PMID:
28662431
8.

Iron-Dependent Enzyme Catalyzes the Initial Step in Biodegradation of N-Nitroglycine by Variovorax sp. Strain JS1663.

Mahan KM, Zheng H, Fida TT, Parry RJ, Graham DE, Spain JC.

Appl Environ Microbiol. 2017 Jul 17;83(15). pii: e00457-17. doi: 10.1128/AEM.00457-17. Print 2017 Aug 1.

9.

Quantifying the Importance of the Rare Biosphere for Microbial Community Response to Organic Pollutants in a Freshwater Ecosystem.

Wang Y, Hatt JK, Tsementzi D, Rodriguez-R LM, Ruiz-Pérez CA, Weigand MR, Kizer H, Maresca G, Krishnan R, Poretsky R, Spain JC, Konstantinidis KT.

Appl Environ Microbiol. 2017 Mar 31;83(8). pii: e03321-16. doi: 10.1128/AEM.03321-16. Print 2017 Apr 15.

10.

Enzymatic hydrolysis by transition-metal-dependent nucleophilic aromatic substitution.

Kalyoncu S, Heaner DP Jr, Kurt Z, Bethel CM, Ukachukwu CU, Chakravarthy S, Spain JC, Lieberman RL.

Nat Chem Biol. 2016 Dec;12(12):1031-1036. doi: 10.1038/nchembio.2191. Epub 2016 Oct 3.

11.

Immobilized Biocatalyst for Detection and Destruction of the Insensitive Explosive, 2,4-Dinitroanisole (DNAN).

Karthikeyan S, Kurt Z, Pandey G, Spain JC.

Environ Sci Technol. 2016 Oct 18;50(20):11193-11199. Epub 2016 Sep 28.

PMID:
27617621
12.

Natural Attenuation of Nonvolatile Contaminants in the Capillary Fringe.

Kurt Z, Mack EE, Spain JC.

Environ Sci Technol. 2016 Sep 20;50(18):10172-8. doi: 10.1021/acs.est.6b02525. Epub 2016 Aug 30.

PMID:
27523982
13.

Effects of Rate-Limited Mass Transfer on Modeling Vapor Intrusion with Aerobic Biodegradation.

Chen Y, Hou D, Lu C, Spain JC, Luo J.

Environ Sci Technol. 2016 Sep 6;50(17):9400-6. doi: 10.1021/acs.est.6b01840. Epub 2016 Aug 12.

PMID:
27486832
14.

Comparative genomic analysis of isoproturon-mineralizing sphingomonads reveals the isoproturon catabolic mechanism.

Yan X, Gu T, Yi Z, Huang J, Liu X, Zhang J, Xu X, Xin Z, Hong Q, He J, Spain JC, Li S, Jiang J.

Environ Microbiol. 2016 Dec;18(12):4888-4906. doi: 10.1111/1462-2920.13413. Epub 2016 Jul 15.

PMID:
27317932
15.

Biodegradation of 2,4-dinitroanisole (DNAN) by Nocardioides sp. JS1661 in water, soil and bioreactors.

Karthikeyan S, Spain JC.

J Hazard Mater. 2016 Jul 15;312:37-44. doi: 10.1016/j.jhazmat.2016.03.029. Epub 2016 Mar 11.

PMID:
27015377
16.

Modeling aerobic biodegradation in the capillary fringe.

Luo J, Kurt Z, Hou D, Spain JC.

Environ Sci Technol. 2015 Feb 3;49(3):1501-10. doi: 10.1021/es503086p. Epub 2015 Jan 15.

PMID:
25548946
17.

Biodegradation of cis-dichloroethene and vinyl chloride in the capillary fringe.

Kurt Z, Mack EE, Spain JC.

Environ Sci Technol. 2014 Nov 18;48(22):13350-7. doi: 10.1021/es503071m. Epub 2014 Nov 5.

PMID:
25329424
18.

Aerobic biodegradation of 2,4-Dinitroanisole by Nocardioides sp. strain JS1661.

Fida TT, Palamuru S, Pandey G, Spain JC.

Appl Environ Microbiol. 2014 Dec;80(24):7725-31. doi: 10.1128/AEM.02752-14. Epub 2014 Oct 3.

19.

The combined structural and kinetic characterization of a bacterial nitronate monooxygenase from Pseudomonas aeruginosa PAO1 establishes NMO class I and II.

Salvi F, Agniswamy J, Yuan H, Vercammen K, Pelicaen R, Cornelis P, Spain JC, Weber IT, Gadda G.

J Biol Chem. 2014 Aug 22;289(34):23764-75. doi: 10.1074/jbc.M114.577791. Epub 2014 Jul 7.

20.

Microbial community degradation of widely used quaternary ammonium disinfectants.

Oh S, Kurt Z, Tsementzi D, Weigand MR, Kim M, Hatt JK, Tandukar M, Pavlostathis SG, Spain JC, Konstantinidis KT.

Appl Environ Microbiol. 2014 Oct;80(19):5892-900. doi: 10.1128/AEM.01255-14. Epub 2014 Jun 20.

21.

Isotope fractionation associated with the biodegradation of 2- and 4-nitrophenols via monooxygenation pathways.

Wijker RS, Kurt Z, Spain JC, Bolotin J, Zeyer J, Hofstetter TB.

Environ Sci Technol. 2013 Dec 17;47(24):14185-93. doi: 10.1021/es403876u. Epub 2013 Dec 4.

PMID:
24266668
22.

Genome of the Root-Associated Plant Growth-Promoting Bacterium Variovorax paradoxus Strain EPS.

Han JI, Spain JC, Leadbetter JR, Ovchinnikova G, Goodwin LA, Han CS, Woyke T, Davenport KW, Orwin PM.

Genome Announc. 2013 Oct 24;1(5). pii: e00843-13. doi: 10.1128/genomeA.00843-13.

23.

The biochemistry of the metabolic poison propionate 3-nitronate and its conjugate acid, 3-nitropropionate.

Francis K, Smitherman C, Nishino SF, Spain JC, Gadda G.

IUBMB Life. 2013 Sep;65(9):759-68. doi: 10.1002/iub.1195. Epub 2013 Jul 29. Review.

24.

Using compound-specific isotope analysis to assess biodegradation of nitroaromatic explosives in the subsurface.

Wijker RS, Bolotin J, Nishino SF, Spain JC, Hofstetter TB.

Environ Sci Technol. 2013 Jul 2;47(13):6872-83. doi: 10.1021/es3051845. Epub 2013 Apr 22.

PMID:
23547531
25.

Biodegradation of chlorobenzene, 1,2-dichlorobenzene, and 1,4-dichlorobenzene in the vadose zone.

Kurt Z, Spain JC.

Environ Sci Technol. 2013 Jul 2;47(13):6846-54. doi: 10.1021/es3049465. Epub 2013 Mar 26.

PMID:
23473240
26.

Cytochrome P450 initiates degradation of cis-dichloroethene by Polaromonas sp. strain JS666.

Nishino SF, Shin KA, Gossett JM, Spain JC.

Appl Environ Microbiol. 2013 Apr;79(7):2263-72. doi: 10.1128/AEM.03445-12. Epub 2013 Jan 25.

27.

Biodegradation of chlorobenzene and nitrobenzene at interfaces between sediment and water.

Kurt Z, Shin K, Spain JC.

Environ Sci Technol. 2012 Nov 6;46(21):11829-35. doi: 10.1021/es302897j. Epub 2012 Oct 19.

PMID:
23035795
28.

Carbon and nitrogen isotope effects associated with the dioxygenation of aniline and diphenylamine.

Pati SG, Shin K, Skarpeli-Liati M, Bolotin J, Eustis SN, Spain JC, Hofstetter TB.

Environ Sci Technol. 2012 Nov 6;46(21):11844-53. doi: 10.1021/es303043t. Epub 2012 Oct 15.

PMID:
23017098
29.

A novel activity for fungal nitronate monooxygenase: detoxification of the metabolic inhibitor propionate-3-nitronate.

Francis K, Nishino SF, Spain JC, Gadda G.

Arch Biochem Biophys. 2012 May;521(1-2):84-9. doi: 10.1016/j.abb.2012.03.015. Epub 2012 Mar 21.

PMID:
22464989
30.

Key enzymes enabling the growth of Arthrobacter sp. strain JBH1 with nitroglycerin as the sole source of carbon and nitrogen.

Husserl J, Hughes JB, Spain JC.

Appl Environ Microbiol. 2012 May;78(10):3649-55. doi: 10.1128/AEM.00006-12. Epub 2012 Mar 16.

31.

Cultivation-independent detection of autotrophic hydrogen-oxidizing bacteria by DNA stable-isotope probing.

Pumphrey GM, Ranchou-Peyruse A, Spain JC.

Appl Environ Microbiol. 2011 Jul;77(14):4931-8. doi: 10.1128/AEM.00285-11. Epub 2011 May 27.

32.

Reverse-transcriptase quantitative PCR method to detect uptake of hydrogen produced from cyanobacteria by Alcaligenes hydrogenophilus, an aerobic hydrogen-oxidising bacterium.

Schroeder S, Ranchou-Peyruse A, Ranchou-Peyruse M, Spain JC.

Arch Microbiol. 2011 Sep;193(9):687-92. doi: 10.1007/s00203-011-0714-9. Epub 2011 May 27.

PMID:
21617984
33.

Genome Sequence of the ethene- and vinyl chloride-oxidizing actinomycete Nocardioides sp. strain JS614.

Coleman NV, Wilson NL, Barry K, Brettin TS, Bruce DC, Copeland A, Dalin E, Detter JC, Del Rio TG, Goodwin LA, Hammon NM, Han S, Hauser LJ, Israni S, Kim E, Kyrpides N, Land ML, Lapidus A, Larimer FW, Lucas S, Pitluck S, Richardson P, Schmutz J, Tapia R, Thompson S, Tice HN, Spain JC, Gossett JG, Mattes TE.

J Bacteriol. 2011 Jul;193(13):3399-400. doi: 10.1128/JB.05109-11. Epub 2011 May 6.

34.

Molecular and biochemical characterization of the 5-nitroanthranilic acid degradation pathway in Bradyrhizobium sp. strain JS329.

Qu Y, Spain JC.

J Bacteriol. 2011 Jun;193(12):3057-63. doi: 10.1128/JB.01188-10. Epub 2011 Apr 15.

35.

Catabolic pathway for 2-nitroimidazole involves a novel nitrohydrolase that also confers drug resistance.

Qu Y, Spain JC.

Environ Microbiol. 2011 Apr;13(4):1010-7. doi: 10.1111/j.1462-2920.2010.02406.x. Epub 2011 Jan 18.

PMID:
21244596
36.

Complete genome sequence of the metabolically versatile plant growth-promoting endophyte Variovorax paradoxus S110.

Han JI, Choi HK, Lee SW, Orwin PM, Kim J, Laroe SL, Kim TG, O'Neil J, Leadbetter JR, Lee SY, Hur CG, Spain JC, Ovchinnikova G, Goodwin L, Han C.

J Bacteriol. 2011 Mar;193(5):1183-90. doi: 10.1128/JB.00925-10. Epub 2010 Dec 23.

37.

Growth of bacteria on 3-nitropropionic acid as a sole source of carbon, nitrogen, and energy.

Nishino SF, Shin KA, Payne RB, Spain JC.

Appl Environ Microbiol. 2010 Jun;76(11):3590-8. doi: 10.1128/AEM.00267-10. Epub 2010 Apr 9.

38.

Biodegradation of 5-nitroanthranilic acid by Bradyrhizobium sp. strain JS329.

Qu Y, Spain JC.

Appl Environ Microbiol. 2010 Mar;76(5):1417-22. doi: 10.1128/AEM.02816-09. Epub 2010 Jan 15.

39.

Growth of Arthrobacter sp. strain JBH1 on nitroglycerin as the sole source of carbon and nitrogen.

Husserl J, Spain JC, Hughes JB.

Appl Environ Microbiol. 2010 Mar;76(5):1689-91. doi: 10.1128/AEM.02400-09. Epub 2010 Jan 8.

40.

Proteomic and transcriptomic analyses reveal genes upregulated by cis-dichloroethene in Polaromonas sp. strain JS666.

Jennings LK, Chartrand MM, Lacrampe-Couloume G, Lollar BS, Spain JC, Gossett JM.

Appl Environ Microbiol. 2009 Jun;75(11):3733-44. doi: 10.1128/AEM.00031-09. Epub 2009 Apr 10.

41.

Pathway and evolutionary implications of diphenylamine biodegradation by Burkholderia sp. strain JS667.

Shin KA, Spain JC.

Appl Environ Microbiol. 2009 May;75(9):2694-704. doi: 10.1128/AEM.02198-08. Epub 2009 Feb 27.

42.

Identifying competing aerobic nitrobenzene biodegradation pathways by compound-specific isotope analysis.

Hofstetter TB, Spain JC, Nishino SF, Bolotin J, Schwarzenbach RP.

Environ Sci Technol. 2008 Jul 1;42(13):4764-70.

PMID:
18678003
43.

Escherichia coli NsrR regulates a pathway for the oxidation of 3-nitrotyramine to 4-hydroxy-3-nitrophenylacetate.

Rankin LD, Bodenmiller DM, Partridge JD, Nishino SF, Spain JC, Spiro S.

J Bacteriol. 2008 Sep;190(18):6170-7. doi: 10.1128/JB.00508-08. Epub 2008 Jul 25.

44.

Three-dimensional immobilization of beta-galactosidase on a silicon surface.

Betancor L, Luckarift HR, Seo JH, Brand O, Spain JC.

Biotechnol Bioeng. 2008 Feb 1;99(2):261-7.

PMID:
17626303
45.

Biosensor system for continuous monitoring of organophosphate aerosols.

Luckarift HR, Greenwald R, Bergin MH, Spain JC, Johnson GR.

Biosens Bioelectron. 2007 Oct 31;23(3):400-6. Epub 2007 May 6.

PMID:
17582755
46.

Silica-immobilized enzymes for multi-step synthesis in microfluidic devices.

Luckarift HR, Ku BS, Dordick JS, Spain JC.

Biotechnol Bioeng. 2007 Oct 15;98(3):701-5.

PMID:
17415802
47.

Mechanism controlling the extended lag period associated with vinyl chloride starvation in Nocardioides sp. strain JS614.

Mattes TE, Coleman NV, Chuang AS, Rogers AJ, Spain JC, Gossett JM.

Arch Microbiol. 2007 Mar;187(3):217-26. Epub 2006 Nov 25.

PMID:
17308936
48.

Rapid, room-temperature synthesis of antibacterial bionanocomposites of lysozyme with amorphous silica or titania.

Luckarift HR, Dickerson MB, Sandhage KH, Spain JC.

Small. 2006 May;2(5):640-3. No abstract available.

PMID:
17193101
49.

Coimmobilization of a redox enzyme and a cofactor regeneration system.

Betancor L, Berne C, Luckarift HR, Spain JC.

Chem Commun (Camb). 2006 Sep 14;(34):3640-2. Epub 2006 Jul 28.

PMID:
17047791
50.

Application of a microfluidic reactor for screening cancer prodrug activation using silica-immobilized nitrobenzene nitroreductase.

Berne C, Betancor L, Luckarift HR, Spain JC.

Biomacromolecules. 2006 Sep;7(9):2631-6.

PMID:
16961327

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