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Items: 1 to 50 of 63

1.

Lassa virus circulating in Liberia: a retrospective genomic characterisation.

Wiley MR, Fakoli L, Letizia AG, Welch SR, Ladner JT, Prieto K, Reyes D, Espy N, Chitty JA, Pratt CB, Di Paola N, Taweh F, Williams D, Saindon J, Davis WG, Patel K, Holland M, Negrón D, Ströher U, Nichol ST, Sozhamannan S, Rollin PE, Dogba J, Nyenswah T, Bolay F, Albariño CG, Fallah M, Palacios G.

Lancet Infect Dis. 2019 Oct 3. pii: S1473-3099(19)30486-4. doi: 10.1016/S1473-3099(19)30486-4. [Epub ahead of print]

PMID:
31588039
2.

2018 Ebola virus disease outbreak in Équateur Province, Democratic Republic of the Congo: a retrospective genomic characterisation.

Mbala-Kingebeni P, Pratt CB, Wiley MR, Diagne MM, Makiala-Mandanda S, Aziza A, Di Paola N, Chitty JA, Diop M, Ayouba A, Vidal N, Faye O, Faye O, Karhemere S, Aruna A, Nsio J, Mulangu F, Mukadi D, Mukadi P, Kombe J, Mulumba A, Duraffour S, Likofata J, Pukuta E, Caviness K, Bartlett ML, Gonzalez J, Minogue T, Sozhamannan S, Gross SM, Schroth GP, Kuhn JH, Donaldson EF, Delaporte E, Sanchez-Lockhart M, Peeters M, Muyembe-Tamfum JJ, Alpha Sall A, Palacios G, Ahuka-Mundeke S.

Lancet Infect Dis. 2019 Jun;19(6):641-647. doi: 10.1016/S1473-3099(19)30124-0. Epub 2019 Apr 15.

PMID:
31000465
3.

Medical countermeasures during the 2018 Ebola virus disease outbreak in the North Kivu and Ituri Provinces of the Democratic Republic of the Congo: a rapid genomic assessment.

Mbala-Kingebeni P, Aziza A, Di Paola N, Wiley MR, Makiala-Mandanda S, Caviness K, Pratt CB, Ladner JT, Kugelman JR, Prieto K, Chitty JA, Larson PA, Beitzel B, Ayouba A, Vidal N, Karhemere S, Diop M, Diagne MM, Faye M, Faye O, Aruna A, Nsio J, Mulangu F, Mukadi D, Mukadi P, Kombe J, Mulumba A, Villabona-Arenas CJ, Pukuta E, Gonzalez J, Bartlett ML, Sozhamannan S, Gross SM, Schroth GP, Tim R, Zhao JJ, Kuhn JH, Diallo B, Yao M, Fall IS, Ndjoloko B, Mossoko M, Lacroix A, Delaporte E, Sanchez-Lockhart M, Sall AA, Muyembe-Tamfum JJ, Peeters M, Palacios G, Ahuka-Mundeke S.

Lancet Infect Dis. 2019 Jun;19(6):648-657. doi: 10.1016/S1473-3099(19)30118-5. Epub 2019 Apr 15.

PMID:
31000464
4.

Functionality of Two Origins of Replication in Vibrio cholerae Strains With a Single Chromosome.

Bruhn M, Schindler D, Kemter FS, Wiley MR, Chase K, Koroleva GI, Palacios G, Sozhamannan S, Waldminghaus T.

Front Microbiol. 2018 Nov 30;9:2932. doi: 10.3389/fmicb.2018.02932. eCollection 2018.

5.

Sensitive detection of live Escherichia coli by bacteriophage amplification-coupled immunoassay on the Luminex® MAGPIX instrument.

Mido T, Schaffer EM, Dorsey RW, Sozhamannan S, Hofmann ER.

J Microbiol Methods. 2018 Sep;152:143-147. doi: 10.1016/j.mimet.2018.07.022. Epub 2018 Aug 2.

PMID:
30077693
6.

Avirulent Bacillus anthracis Strain with Molecular Assay Targets as Surrogate for Irradiation-Inactivated Virulent Spores.

Plaut RD, Staab AB, Munson MA, Gebhardt JS, Klimko CP, Quirk AV, Cote CK, Buhr TL, Rossmaier RD, Bernhards RC, Love CE, Berk KL, Abshire TG, Rozak DA, Beck LC, Stibitz S, Goodwin BG, Smith MA, Sozhamannan S.

Emerg Infect Dis. 2018 Apr;24(4). doi: 10.3201/eid2404.171646.

7.

Whole-Genome Sequences of Variants of Bacillus anthracis Sterne and Their Toxin Gene Deletion Mutants.

Staab A, Plaut RD, Pratt C, Lovett SP, Wiley MR, Biggs TD, Bernhards RC, Beck LC, Palacios GF, Stibitz S, Jones KL, Goodwin BG, Smith MA, Sozhamannan S.

Genome Announc. 2017 Nov 9;5(45). pii: e01231-17. doi: 10.1128/genomeA.01231-17.

8.

Exception to the Rule: Genomic Characterization of Naturally Occurring Unusual Vibrio cholerae Strains with a Single Chromosome.

Xie G, Johnson SL, Davenport KW, Rajavel M, Waldminghaus T, Detter JC, Chain PS, Sozhamannan S.

Int J Genomics. 2017;2017:8724304. doi: 10.1155/2017/8724304. Epub 2017 Aug 29.

9.

AOAC SMPR 2016.012.

Olson V, Arce J, Beck LC, Blyn L, Cahall R, Clark AJ, Damer K, Ibrahim MS, Jackson PJ, Kiss K, Meyer H, Naraghi-Arani P, Pettit D, Schaefer F, Scheckelhoff M, Sozhamannan S, Vitalis E, Coates SG.

J AOAC Int. 2017 Jan 1;100(1):270-275. doi: 10.5740/jaoacint.SMPR2016.012. No abstract available.

PMID:
28825555
10.

AOAC SMPR 2016.011.

Sharma S, Arce J, Beck LC, Cahall R, Damer K, Jackson PJ, Lesho M, Ozanich R, Poli M, Rozak D, Shah S, Smith T, Sozhamannan S, Thirunavukkarasu N, Coates SG.

J AOAC Int. 2017 Jan 1;100(1):266-269. doi: 10.5740/jaoacint.SMPR2016.011. No abstract available.

PMID:
28825554
11.

AOAC SMPR 2016.010.

Gee J, Arce J, Beck LC, Blank TR, Blyn L, Cahall R, Clark AJ, Currie B, Damer K, Davenport M, DeShazer D, Johns M, Keim PS, Kiss K, Lesho M, Lin N, Morse SA, Naraghi-Arani P, Ozanich R, Roberto F, Rozak D, Sahl J, Schaefer F, Schutzer S, Schweizer HP, Sozhamannan S, Tuanyok A, Coates S.

J AOAC Int. 2017 Jan 1;100(1):261-265. doi: 10.5740/jaoacint.SMPR2016.010. No abstract available.

PMID:
28825553
12.

AOAC SMPR 2016.009.

Roberto F, Arce J, Beck LC, Blank TR, Cahall R, Damer K, Ficht T, Foster J, Kiss K, Nikolich M, Olsen S, Ozanich R, Rozak D, Schaefer F, Sozhamannan S, Tiller R, Coates SG.

J AOAC Int. 2017 Jan 1;100(1):255-260. doi: 10.5740/jaoacint.SMPR2016.009. No abstract available.

PMID:
28825552
13.

AOAC SMPR(®) 2016.008.

Lindler L, Appler J, Ballin J, Bauer T, Beck L, Boylan J, Bull R, Cahall R, Damer K, Davenport M, Egan C, Gage K, Gibbons J, Hadfield TL, Johns M, Lesho M, Maple L, Pals T, Perry R, Retford M, Scheckelhoff M, Shah S, Sozhamannan S, Wagner D, Watson D, Worsham P, Coates SG.

J AOAC Int. 2016 Jul;99(4):1095-1100. doi: 10.5740/jaoacint.SMPR2016.008. No abstract available.

PMID:
27455938
14.

AOAC SMPR(®) 2016.007.

Keim PS, Wagner D, Appler J, Bauer T, Beck L, Boylan J, Cahall R, Damer K, Davenport M, Forsman M, Hinrichs SH, Kiss K, Maple L, Morse SA, Naraghi-Arani P, Petersen J, Pettit D, Retford M, Scheckelhoff M, Shah S, Sozhamannan S, Coates SG.

J AOAC Int. 2016 Jul;99(4):1090-1094. doi: 10.5740/jaoacint.SMPR2016.007. No abstract available.

PMID:
27455937
15.

AOAC SMPR(®) 2016.006.

Hadfield TL, Jackson PJ, Appler J, Baillie L, Bailor E, Ballin J, Beck L, Blanke SR, Cahall R, Damer K, Dragon D, Forsman M, Jaing C, Johns M, Lin N, Maple L, Morse SA, New D, Retford M, Shah S, Sozhamannan S, Trudil D, Welkos S, Coates SG.

J AOAC Int. 2016 Jul;99(4):1084-1089. doi: 10.5740/jaoacint.SMPR2016.006. No abstract available.

PMID:
27455936
16.

Evaluation of Signature Erosion in Ebola Virus Due to Genomic Drift and Its Impact on the Performance of Diagnostic Assays.

Sozhamannan S, Holland MY, Hall AT, Negrón DA, Ivancich M, Koehler JW, Minogue TD, Campbell CE, Berger WJ, Christopher GW, Goodwin BG, Smith MA.

Viruses. 2015 Jun 17;7(6):3130-54. doi: 10.3390/v7062763.

17.

Complete Genome Assemblies for Two Single-Chromosome Vibrio cholerae Isolates, Strains 1154-74 (Serogroup O49) and 10432-62 (Serogroup O27).

Johnson SL, Khiani A, Bishop-Lilly KA, Chapman C, Patel M, Verratti K, Teshima H, Munk AC, Bruce DC, Han CS, Xie G, Davenport KW, Chain P, Sozhamannan S.

Genome Announc. 2015 May 14;3(3). pii: e00462-15. doi: 10.1128/genomeA.00462-15.

18.

Scanning the landscape of genome architecture of non-O1 and non-O139 Vibrio cholerae by whole genome mapping reveals extensive population genetic diversity.

Chapman C, Henry M, Bishop-Lilly KA, Awosika J, Briska A, Ptashkin RN, Wagner T, Rajanna C, Tsang H, Johnson SL, Mokashi VP, Chain PS, Sozhamannan S.

PLoS One. 2015 Mar 20;10(3):e0120311. doi: 10.1371/journal.pone.0120311. eCollection 2015.

19.

Genome sequencing of 15 clinical Vibrio isolates, including 13 non-o1/non-o139 serogroup strains.

Bishop-Lilly KA, Johnson SL, Verratti K, Luu T, Khiani A, Awosika J, Mokashi VP, Chain PS, Sozhamannan S.

Genome Announc. 2014 Sep 11;2(5). pii: e00893-14. doi: 10.1128/genomeA.00893-14.

20.

The odd one out: Bacillus ACT bacteriophage CP-51 exhibits unusual properties compared to related Spounavirinae W.Ph. and Bastille.

Klumpp J, Schmuki M, Sozhamannan S, Beyer W, Fouts DE, Bernbach V, Calendar R, Loessner MJ.

Virology. 2014 Aug;462-463:299-308. doi: 10.1016/j.virol.2014.06.012. Epub 2014 Jul 8.

21.

Beyond the chromosome: the prevalence of unique extra-chromosomal bacteriophages with integrated virulence genes in pathogenic Staphylococcus aureus.

Utter B, Deutsch DR, Schuch R, Winer BY, Verratti K, Bishop-Lilly K, Sozhamannan S, Fischetti VA.

PLoS One. 2014 Jun 25;9(6):e100502. doi: 10.1371/journal.pone.0100502. eCollection 2014.

22.

Standards for sequencing viral genomes in the era of high-throughput sequencing.

Ladner JT, Beitzel B, Chain PS, Davenport MG, Donaldson EF, Frieman M, Kugelman JR, Kuhn JH, O'Rear J, Sabeti PC, Wentworth DE, Wiley MR, Yu GY; Threat Characterization Consortium, Sozhamannan S, Bradburne C, Palacios G.

MBio. 2014 Jun 17;5(3):e01360-14. doi: 10.1128/mBio.01360-14.

23.

Genetic evidence for the involvement of the S-layer protein gene sap and the sporulation genes spo0A, spo0B, and spo0F in Phage AP50c infection of Bacillus anthracis.

Plaut RD, Beaber JW, Zemansky J, Kaur AP, George M, Biswas B, Henry M, Bishop-Lilly KA, Mokashi V, Hannah RM, Pope RK, Read TD, Stibitz S, Calendar R, Sozhamannan S.

J Bacteriol. 2014 Mar;196(6):1143-54. doi: 10.1128/JB.00739-13. Epub 2013 Dec 20.

24.

Whole genome sequencing and comparative genomic analyses of two Vibrio cholerae O139 Bengal-specific Podoviruses to other N4-like phages reveal extensive genetic diversity.

Fouts DE, Klumpp J, Bishop-Lilly KA, Rajavel M, Willner KM, Butani A, Henry M, Biswas B, Li M, Albert MJ, Loessner MJ, Calendar R, Sozhamannan S.

Virol J. 2013 May 28;10:165. doi: 10.1186/1743-422X-10-165.

25.

Bacteriophage functional genomics and its role in bacterial pathogen detection.

Klumpp J, Fouts DE, Sozhamannan S.

Brief Funct Genomics. 2013 Jul;12(4):354-65. doi: 10.1093/bfgp/elt009. Epub 2013 Mar 21.

PMID:
23520178
26.

Next generation sequencing technologies and the changing landscape of phage genomics.

Klumpp J, Fouts DE, Sozhamannan S.

Bacteriophage. 2012 Jul 1;2(3):190-199.

27.

A Yersinia pestis-specific, lytic phage preparation significantly reduces viable Y. pestis on various hard surfaces experimentally contaminated with the bacterium.

Rashid MH, Revazishvili T, Dean T, Butani A, Verratti K, Bishop-Lilly KA, Sozhamannan S, Sulakvelidze A, Rajanna C.

Bacteriophage. 2012 Jul 1;2(3):168-177.

28.

Development of a high throughput assay for indirectly measuring phage growth using the OmniLog(TM) system.

Henry M, Biswas B, Vincent L, Mokashi V, Schuch R, Bishop-Lilly KA, Sozhamannan S.

Bacteriophage. 2012 Jul 1;2(3):159-167.

29.

Genomic comparison of Escherichia coli O104:H4 isolates from 2009 and 2011 reveals plasmid, and prophage heterogeneity, including shiga toxin encoding phage stx2.

Ahmed SA, Awosika J, Baldwin C, Bishop-Lilly KA, Biswas B, Broomall S, Chain PS, Chertkov O, Chokoshvili O, Coyne S, Davenport K, Detter JC, Dorman W, Erkkila TH, Folster JP, Frey KG, George M, Gleasner C, Henry M, Hill KK, Hubbard K, Insalaco J, Johnson S, Kitzmiller A, Krepps M, Lo CC, Luu T, McNew LA, Minogue T, Munk CA, Osborne B, Patel M, Reitenga KG, Rosenzweig CN, Shea A, Shen X, Strockbine N, Tarr C, Teshima H, van Gieson E, Verratti K, Wolcott M, Xie G, Sozhamannan S, Gibbons HS; Threat Characterization Consortium.

PLoS One. 2012;7(11):e48228. doi: 10.1371/journal.pone.0048228. Epub 2012 Nov 1.

30.

Whole genome sequencing of phage resistant Bacillus anthracis mutants reveals an essential role for cell surface anchoring protein CsaB in phage AP50c adsorption.

Bishop-Lilly KA, Plaut RD, Chen PE, Akmal A, Willner KM, Butani A, Dorsey S, Mokashi V, Mateczun AJ, Chapman C, George M, Luu T, Read TD, Calendar R, Stibitz S, Sozhamannan S.

Virol J. 2012 Oct 26;9:246. doi: 10.1186/1743-422X-9-246.

31.

Novel high-molecular-weight, R-type bacteriocins of Clostridium difficile.

Gebhart D, Williams SR, Bishop-Lilly KA, Govoni GR, Willner KM, Butani A, Sozhamannan S, Martin D, Fortier LC, Scholl D.

J Bacteriol. 2012 Nov;194(22):6240-7. doi: 10.1128/JB.01272-12. Epub 2012 Sep 14.

32.

Genomic characterization of the Bacillus cereus sensu lato species: backdrop to the evolution of Bacillus anthracis.

Zwick ME, Joseph SJ, Didelot X, Chen PE, Bishop-Lilly KA, Stewart AC, Willner K, Nolan N, Lentz S, Thomason MK, Sozhamannan S, Mateczun AJ, Du L, Read TD.

Genome Res. 2012 Aug;22(8):1512-24. doi: 10.1101/gr.134437.111. Epub 2012 May 29.

33.

Genetic variation and linkage disequilibrium in Bacillus anthracis.

Zwick ME, Thomason MK, Chen PE, Johnson HR, Sozhamannan S, Mateczun A, Read TD.

Sci Rep. 2011;1:169. doi: 10.1038/srep00169. Epub 2011 Nov 24.

34.

PheMaDB: a solution for storage, retrieval, and analysis of high throughput phenotype data.

Chang WE, Sarver K, Higgs BW, Read TD, Nolan NM, Chapman CE, Bishop-Lilly KA, Sozhamannan S.

BMC Bioinformatics. 2011 Apr 20;12:109. doi: 10.1186/1471-2105-12-109.

35.

Genomic signatures of strain selection and enhancement in Bacillus atrophaeus var. globigii, a historical biowarfare simulant.

Gibbons HS, Broomall SM, McNew LA, Daligault H, Chapman C, Bruce D, Karavis M, Krepps M, McGregor PA, Hong C, Park KH, Akmal A, Feldman A, Lin JS, Chang WE, Higgs BW, Demirev P, Lindquist J, Liem A, Fochler E, Read TD, Tapia R, Johnson S, Bishop-Lilly KA, Detter C, Han C, Sozhamannan S, Rosenzweig CN, Skowronski EW.

PLoS One. 2011 Mar 25;6(3):e17836. doi: 10.1371/journal.pone.0017836.

36.

Characterization of pPCP1 Plasmids in Yersinia pestis Strains Isolated from the Former Soviet Union.

Rajanna C, Revazishvili T, Rashid MH, Chubinidze S, Bakanidze L, Tsanava S, Imnadze P, Bishop-Lilly KA, Sozhamannan S, Gibbons HS, Morris JG, Sulakvelidze A.

Int J Microbiol. 2010;2010:760819. doi: 10.1155/2010/760819. Epub 2010 Dec 20.

37.

Arbovirus detection in insect vectors by rapid, high-throughput pyrosequencing.

Bishop-Lilly KA, Turell MJ, Willner KM, Butani A, Nolan NM, Lentz SM, Akmal A, Mateczun A, Brahmbhatt TN, Sozhamannan S, Whitehouse CA, Read TD.

PLoS Negl Trop Dis. 2010 Nov 9;4(11):e878. doi: 10.1371/journal.pntd.0000878.

38.

High-redundancy draft sequencing of 15 clinical and environmental Burkholderia strains.

Mukhopadhyay S, Thomason MK, Lentz S, Nolan N, Willner K, Gee JE, Glass MB, Inglis TJ, Merritt A, Levy A, Sozhamannan S, Mateczun A, Read TD.

J Bacteriol. 2010 Dec;192(23):6313-4. doi: 10.1128/JB.00991-10. Epub 2010 Sep 24.

39.

Rapid identification of genetic modifications in Bacillus anthracis using whole genome draft sequences generated by 454 pyrosequencing.

Chen PE, Willner KM, Butani A, Dorsey S, George M, Stewart A, Lentz SM, Cook CE, Akmal A, Price LB, Keim PS, Mateczun A, Brahmbhatt TN, Bishop-Lilly KA, Zwick ME, Read TD, Sozhamannan S.

PLoS One. 2010 Aug 25;5(8):e12397. doi: 10.1371/journal.pone.0012397.

40.

Genomic characterization of the Yersinia genus.

Chen PE, Cook C, Stewart AC, Nagarajan N, Sommer DD, Pop M, Thomason B, Thomason MP, Lentz S, Nolan N, Sozhamannan S, Sulakvelidze A, Mateczun A, Du L, Zwick ME, Read TD.

Genome Biol. 2010 Jan 4;11(1):R1. doi: 10.1186/gb-2010-11-1-r1.

41.

Genomics. Genome project standards in a new era of sequencing.

Chain PS, Grafham DV, Fulton RS, Fitzgerald MG, Hostetler J, Muzny D, Ali J, Birren B, Bruce DC, Buhay C, Cole JR, Ding Y, Dugan S, Field D, Garrity GM, Gibbs R, Graves T, Han CS, Harrison SH, Highlander S, Hugenholtz P, Khouri HM, Kodira CD, Kolker E, Kyrpides NC, Lang D, Lapidus A, Malfatti SA, Markowitz V, Metha T, Nelson KE, Parkhill J, Pitluck S, Qin X, Read TD, Schmutz J, Sozhamannan S, Sterk P, Strausberg RL, Sutton G, Thomson NR, Tiedje JM, Weinstock G, Wollam A; Genomic Standards Consortium Human Microbiome Project Jumpstart Consortium, Detter JC.

Science. 2009 Oct 9;326(5950):236-7. doi: 10.1126/science.1180614. No abstract available.

42.

Quantitative characterization of quantum dot-labeled lambda phage for Escherichia coli detection.

Yim PB, Clarke ML, McKinstry M, De Paoli Lacerda SH, Pease LF 3rd, Dobrovolskaia MA, Kang H, Read TD, Sozhamannan S, Hwang J.

Biotechnol Bioeng. 2009 Dec 15;104(6):1059-67. doi: 10.1002/bit.22488.

PMID:
19634184
43.

Molecular characterization of a variant of Bacillus anthracis-specific phage AP50 with improved bacteriolytic activity.

Sozhamannan S, McKinstry M, Lentz SM, Jalasvuori M, McAfee F, Smith A, Dabbs J, Ackermann HW, Bamford JK, Mateczun A, Read TD.

Appl Environ Microbiol. 2008 Nov;74(21):6792-6. doi: 10.1128/AEM.01124-08. Epub 2008 Sep 12.

44.

RTX toxin actin cross-linking activity in clinical and environmental isolates of Vibrio cholerae.

Cordero CL, Sozhamannan S, Satchell KJ.

J Clin Microbiol. 2007 Jul;45(7):2289-92. Epub 2007 May 23.

45.

The Bacillus anthracis chromosome contains four conserved, excision-proficient, putative prophages.

Sozhamannan S, Chute MD, McAfee FD, Fouts DE, Akmal A, Galloway DR, Mateczun A, Baillie LW, Read TD.

BMC Microbiol. 2006 Apr 6;6:34.

46.

Multilocus sequence typing has better discriminatory ability for typing Vibrio cholerae than does pulsed-field gel electrophoresis and provides a measure of phylogenetic relatedness.

Kotetishvili M, Stine OC, Chen Y, Kreger A, Sulakvelidze A, Sozhamannan S, Morris JG Jr.

J Clin Microbiol. 2003 May;41(5):2191-6.

47.

Conformation of the hexasaccharide repeating subunit from the Vibrio cholerae O139 capsular polysaccharide.

Adeyeye J, Azurmendi HF, Stroop CJ, Sozhamannan S, Williams AL, Adetumbi AM, Johnson JA, Bush CA.

Biochemistry. 2003 Apr 8;42(13):3979-88.

PMID:
12667089
48.
49.

Evidence for the emergence of non-O1 and non-O139 Vibrio cholerae strains with pathogenic potential by exchange of O-antigen biosynthesis regions.

Li M, Shimada T, Morris JG Jr, Sulakvelidze A, Sozhamannan S.

Infect Immun. 2002 May;70(5):2441-53. Erratum in: Infect Immun 2003 Jan;71(1):588.

50.

Phylogeny of Vibrio cholerae based on recA sequence.

Stine OC, Sozhamannan S, Gou Q, Zheng S, Morris JG Jr, Johnson JA.

Infect Immun. 2000 Dec;68(12):7180-5.

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