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Items: 13

1.

Patterns of microsatellite distribution across eukaryotic genomes.

Srivastava S, Avvaru AK, Sowpati DT, Mishra RK.

BMC Genomics. 2019 Feb 22;20(1):153. doi: 10.1186/s12864-019-5516-5.

2.

The putative Neuronatin imprint control region is an enhancer that also regulates the Blcap gene.

Thamban T, Sowpati DT, Pai V, Nithianandam V, Abe T, Shioi G, Mishra RK, Khosla S.

Epigenomics. 2019 Feb;11(3):251-266. doi: 10.2217/epi-2018-0060. Epub 2019 Jan 23.

PMID:
30672333
3.

Epigenomic and genomic landscape of Drosophila melanogaster heterochromatic genes.

Saha P, Sowpati DT, Mishra RK.

Genomics. 2019 Mar;111(2):177-185. doi: 10.1016/j.ygeno.2018.02.001. Epub 2018 Feb 10.

PMID:
29432976
4.

PERF: an exhaustive algorithm for ultra-fast and efficient identification of microsatellites from large DNA sequences.

Avvaru AK, Sowpati DT, Mishra RK.

Bioinformatics. 2018 Mar 15;34(6):943-948. doi: 10.1093/bioinformatics/btx721.

PMID:
29121165
5.

C-State: an interactive web app for simultaneous multi-gene visualization and comparative epigenetic pattern search.

Sowpati DT, Srivastava S, Dhawan J, Mishra RK.

BMC Bioinformatics. 2017 Sep 13;18(Suppl 10):392. doi: 10.1186/s12859-017-1786-6.

6.

MSDB: A Comprehensive Database of Simple Sequence Repeats.

Avvaru AK, Saxena S, Sowpati DT, Mishra RK.

Genome Biol Evol. 2017 Jun 1;9(6):1797-1802. doi: 10.1093/gbe/evx132.

7.

Single Amino Acid Repeats in the Proteome World: Structural, Functional, and Evolutionary Insights.

Kumar AS, Sowpati DT, Mishra RK.

PLoS One. 2016 Nov 28;11(11):e0166854. doi: 10.1371/journal.pone.0166854. eCollection 2016.

8.

Genome-wide non-CpG methylation of the host genome during M. tuberculosis infection.

Sharma G, Sowpati DT, Singh P, Khan MZ, Ganji R, Upadhyay S, Banerjee S, Nandicoori VK, Khosla S.

Sci Rep. 2016 Apr 26;6:25006. doi: 10.1038/srep25006.

9.

A ChIP-on-chip tiling array approach detects functional histone-free regions associated with boundaries at vertebrate HOX genes.

Srivastava S, Sowpati DT, Garapati HS, Puri D, Dhawan J, Mishra RK.

Genom Data. 2014 May 10;2:78-81. doi: 10.1016/j.gdata.2014.05.001. eCollection 2014 Dec.

10.

Expansion of the polycomb system and evolution of complexity.

Sowpati DT, Ramamoorthy S, Mishra RK.

Mech Dev. 2015 Nov;138 Pt 2:97-112. doi: 10.1016/j.mod.2015.07.013. Epub 2015 Aug 7.

11.

Human mesenchymal stem cells: New sojourn of bacterial pathogens.

Kohli S, Singh Y, Sowpati DT, Ehtesham NZ, Dobrindt U, Hacker J, Hasnain SE.

Int J Med Microbiol. 2015 May;305(3):322-6. doi: 10.1016/j.ijmm.2015.01.001. Epub 2015 Jan 13. Review.

PMID:
25648374
12.

Gene cooption in mycobacteria and search for virulence attributes: comparative proteomic analyses of Mycobacterium tuberculosis, Mycobacterium indicus pranii and other mycobacteria.

Singh Y, Kohli S, Sowpati DT, Rahman SA, Tyagi AK, Hasnain SE.

Int J Med Microbiol. 2014 Jul;304(5-6):742-8. doi: 10.1016/j.ijmm.2014.05.006. Epub 2014 May 29.

PMID:
24951307
13.

An intronic DNA sequence within the mouse Neuronatin gene exhibits biochemical characteristics of an ICR and acts as a transcriptional activator in Drosophila.

Sowpati DT, Thiagarajan D, Sharma S, Sultana H, John R, Surani A, Mishra RK, Khosla S.

Mech Dev. 2008 Nov-Dec;125(11-12):963-73. doi: 10.1016/j.mod.2008.08.002. Epub 2008 Aug 28.

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