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Items: 34

1.

Phylogeny Estimation by Integration over Isolation with Migration Models.

Hey J, Chung Y, Sethuraman A, Lachance J, Tishkoff S, Sousa VC, Wang Y.

Mol Biol Evol. 2018 Nov 1;35(11):2805-2818. doi: 10.1093/molbev/msy162.

2.

The Evolutionary History of Nebraska Deer Mice: Local Adaptation in the Face of Strong Gene Flow.

Pfeifer SP, Laurent S, Sousa VC, Linnen CR, Foll M, Excoffier L, Hoekstra HE, Jensen JD.

Mol Biol Evol. 2018 Apr 1;35(4):792-806. doi: 10.1093/molbev/msy004.

3.

Different genomic changes underlie adaptive evolution in populations of contrasting history.

Seabra SG, Fragata I, Antunes MA, Faria GS, Santos MA, Sousa VC, Simões P, Matos M.

Mol Biol Evol. 2017 Sep 18. doi: 10.1093/molbev/msx247. [Epub ahead of print]

PMID:
29029198
4.

Ancient genomes show social and reproductive behavior of early Upper Paleolithic foragers.

Sikora M, Seguin-Orlando A, Sousa VC, Albrechtsen A, Korneliussen T, Ko A, Rasmussen S, Dupanloup I, Nigst PR, Bosch MD, Renaud G, Allentoft ME, Margaryan A, Vasilyev SV, Veselovskaya EV, Borutskaya SB, Deviese T, Comeskey D, Higham T, Manica A, Foley R, Meltzer DJ, Nielsen R, Excoffier L, Mirazon Lahr M, Orlando L, Willerslev E.

Science. 2017 Nov 3;358(6363):659-662. doi: 10.1126/science.aao1807. Epub 2017 Oct 5.

PMID:
28982795
5.

And next… Adnexa: Subungual lipoma.

Cunha N, Sousa VC, Pinheiro R, Lencastre A.

Eur J Dermatol. 2017 Aug 1;27(4):448-449. doi: 10.1684/ejd.2017.3109. Review. No abstract available.

PMID:
28862139
6.

Dermoscopic and reflectance confocal microscopic presentation of Hailey-Hailey disease: A case series.

Oliveira A, Arzberger E, Pimentel B, de Sousa VC, Leal-Filipe P.

Skin Res Technol. 2018 Feb;24(1):85-92. doi: 10.1111/srt.12394. Epub 2017 Aug 7.

PMID:
28782140
7.

History, geography and host use shape genomewide patterns of genetic variation in the redheaded pine sawfly (Neodiprion lecontei).

Bagley RK, Sousa VC, Niemiller ML, Linnen CR.

Mol Ecol. 2017 Feb;26(4):1022-1044. doi: 10.1111/mec.13972. Epub 2017 Jan 27.

PMID:
28028850
8.

Chimpanzee genomic diversity reveals ancient admixture with bonobos.

de Manuel M, Kuhlwilm M, Frandsen P, Sousa VC, Desai T, Prado-Martinez J, Hernandez-Rodriguez J, Dupanloup I, Lao O, Hallast P, Schmidt JM, Heredia-Genestar JM, Benazzo A, Barbujani G, Peter BM, Kuderna LF, Casals F, Angedakin S, Arandjelovic M, Boesch C, Kühl H, Vigilant L, Langergraber K, Novembre J, Gut M, Gut I, Navarro A, Carlsen F, Andrés AM, Siegismund HR, Scally A, Excoffier L, Tyler-Smith C, Castellano S, Xue Y, Hvilsom C, Marques-Bonet T.

Science. 2016 Oct 28;354(6311):477-481. Epub 2016 Oct 27.

9.

A genomic history of Aboriginal Australia.

Malaspinas AS, Westaway MC, Muller C, Sousa VC, Lao O, Alves I, Bergström A, Athanasiadis G, Cheng JY, Crawford JE, Heupink TH, Macholdt E, Peischl S, Rasmussen S, Schiffels S, Subramanian S, Wright JL, Albrechtsen A, Barbieri C, Dupanloup I, Eriksson A, Margaryan A, Moltke I, Pugach I, Korneliussen TS, Levkivskyi IP, Moreno-Mayar JV, Ni S, Racimo F, Sikora M, Xue Y, Aghakhanian FA, Brucato N, Brunak S, Campos PF, Clark W, Ellingvåg S, Fourmile G, Gerbault P, Injie D, Koki G, Leavesley M, Logan B, Lynch A, Matisoo-Smith EA, McAllister PJ, Mentzer AJ, Metspalu M, Migliano AB, Murgha L, Phipps ME, Pomat W, Reynolds D, Ricaut FX, Siba P, Thomas MG, Wales T, Wall CM, Oppenheimer SJ, Tyler-Smith C, Durbin R, Dortch J, Manica A, Schierup MH, Foley RA, Lahr MM, Bowern C, Wall JD, Mailund T, Stoneking M, Nielsen R, Sandhu MS, Excoffier L, Lambert DM, Willerslev E.

Nature. 2016 Oct 13;538(7624):207-214. doi: 10.1038/nature18299. Epub 2016 Sep 21.

PMID:
27654914
10.

Demographic modelling with whole-genome data reveals parallel origin of similar Pundamilia cichlid species after hybridization.

Meier JI, Sousa VC, Marques DA, Selz OM, Wagner CE, Excoffier L, Seehausen O.

Mol Ecol. 2017 Jan;26(1):123-141. doi: 10.1111/mec.13838. Epub 2016 Oct 7.

11.

Epigenetics and energetics in ventral hippocampus mediate rapid antidepressant action: Implications for treatment resistance.

Bigio B, Mathé AA, Sousa VC, Zelli D, Svenningsson P, McEwen BS, Nasca C.

Proc Natl Acad Sci U S A. 2016 Jul 12;113(28):7906-11. doi: 10.1073/pnas.1603111113. Epub 2016 Jun 27.

12.

Genome-culture coevolution promotes rapid divergence of killer whale ecotypes.

Foote AD, Vijay N, Ávila-Arcos MC, Baird RW, Durban JW, Fumagalli M, Gibbs RA, Hanson MB, Korneliussen TS, Martin MD, Robertson KM, Sousa VC, Vieira FG, Vinař T, Wade P, Worley KC, Excoffier L, Morin PA, Gilbert MT, Wolf JB.

Nat Commun. 2016 May 31;7:11693. doi: 10.1038/ncomms11693.

13.

Association of Catalase and Glutathione Peroxidase 1 Polymorphisms with Chronic Hepatitis C Outcome.

Sousa VC, Carmo RF, Vasconcelos LR, Aroucha DC, Pereira LM, Moura P, Cavalcanti MS.

Ann Hum Genet. 2016 May;80(3):145-53. doi: 10.1111/ahg.12152. Epub 2016 Mar 18.

14.

A pigmented flat lesion on the leg of a 72-year-old man.

de Sousa VC, Oliveira A.

Dermatol Pract Concept. 2015 Oct 31;5(4):5-6. doi: 10.5826/dpc.0504a02. eCollection 2015 Oct. No abstract available.

15.

Long-Distance Dispersal Shaped Patterns of Human Genetic Diversity in Eurasia.

Alves I, Arenas M, Currat M, Sramkova Hanulova A, Sousa VC, Ray N, Excoffier L.

Mol Biol Evol. 2016 Apr;33(4):946-58. doi: 10.1093/molbev/msv332. Epub 2015 Dec 4.

16.

[Postpartum Takotsubo cardiomyopathy: case report].

de Sousa VC, Pinto AP, Lopes AP, Gomes FM, Pinho Mde L, Marques MI.

Rev Bras Ginecol Obstet. 2015 Nov;37(11):526-32. doi: 10.1590/SO100-720320150005391. Portuguese.

17.

Adaptation to Resistance Training Is Associated with Higher Phagocytic (but Not Oxidative) Activity in Neutrophils of Older Women.

Bartholomeu-Neto J, Brito CJ, Nóbrega OT, Sousa VC, Oliveira Toledo J, Silva Paula R, Alves DJ, Ferreira AP, Franco Moraes C, Córdova C.

J Immunol Res. 2015;2015:724982. doi: 10.1155/2015/724982. Epub 2015 Oct 7.

18.

The population genomics of rapid adaptation: disentangling signatures of selection and demography in white sands lizards.

Laurent S, Pfeifer SP, Settles ML, Hunter SS, Hardwick KM, Ormond L, Sousa VC, Jensen JD, Rosenblum EB.

Mol Ecol. 2016 Jan;25(1):306-23. doi: 10.1111/mec.13385. Epub 2015 Oct 30.

PMID:
26363411
19.

Lurasidone and fluoxetine reduce novelty-induced hypophagia and NMDA receptor subunit and PSD-95 expression in mouse brain.

Stan TL, Sousa VC, Zhang X, Ono M, Svenningsson P.

Eur Neuropsychopharmacol. 2015 Oct;25(10):1714-22. doi: 10.1016/j.euroneuro.2015.07.007. Epub 2015 Jul 20.

PMID:
26256011
20.

NMDA receptor antagonists ketamine and Ro25-6981 inhibit evoked release of glutamate in vivo in the subiculum.

Stan TL, Alvarsson A, Branzell N, Sousa VC, Svenningsson P.

Transl Psychiatry. 2014 Jun 3;4:e395. doi: 10.1038/tp.2014.39.

21.

Maternal separation impairs long term-potentiation in CA1-CA3 synapses and hippocampal-dependent memory in old rats.

Sousa VC, Vital J, Costenla AR, Batalha VL, Sebastião AM, Ribeiro JA, Lopes LV.

Neurobiol Aging. 2014 Jul;35(7):1680-5. doi: 10.1016/j.neurobiolaging.2014.01.024. Epub 2014 Jan 25.

PMID:
24559649
22.

Serotonin 1A receptors and sexual behavior in a genetic model of depression.

Schijven D, Sousa VC, Roelofs J, Olivier B, Olivier JD.

Pharmacol Biochem Behav. 2014 Jun;121:82-7. doi: 10.1016/j.pbb.2013.12.012. Epub 2013 Dec 15.

PMID:
24345571
23.

Regulation of TrkB receptor translocation to lipid rafts by adenosine A(2A) receptors and its functional implications for BDNF-induced regulation of synaptic plasticity.

Assaife-Lopes N, Sousa VC, Pereira DB, Ribeiro JA, Sebastião AM.

Purinergic Signal. 2014;10(2):251-67. doi: 10.1007/s11302-013-9389-9. Epub 2013 Nov 23.

24.

Robust demographic inference from genomic and SNP data.

Excoffier L, Dupanloup I, Huerta-Sánchez E, Sousa VC, Foll M.

PLoS Genet. 2013 Oct;9(10):e1003905. doi: 10.1371/journal.pgen.1003905. Epub 2013 Oct 24.

25.

Identifying loci under selection against gene flow in isolation-with-migration models.

Sousa VC, Carneiro M, Ferrand N, Hey J.

Genetics. 2013 May;194(1):211-33. doi: 10.1534/genetics.113.149211. Epub 2013 Mar 2.

26.

Investigating sex-biased migration during the Neolithic transition in Europe, using an explicit spatial simulation framework.

Rasteiro R, Bouttier PA, Sousa VC, Chikhi L.

Proc Biol Sci. 2012 Jun 22;279(1737):2409-16. doi: 10.1098/rspb.2011.2323. Epub 2012 Feb 1.

27.

Population divergence with or without admixture: selecting models using an ABC approach.

Sousa VC, Beaumont MA, Fernandes P, Coelho MM, Chikhi L.

Heredity (Edinb). 2012 May;108(5):521-30. doi: 10.1038/hdy.2011.116. Epub 2011 Dec 7.

28.

On the nonidentifiability of migration time estimates in isolation with migration models.

Sousa VC, Grelaud A, Hey J.

Mol Ecol. 2011 Oct;20(19):3956-62. No abstract available.

29.

2BAD: an application to estimate the parental contributions during two independent admixture events.

Bray TC, Sousa VC, Parreira B, Bruford MW, Chikhi L.

Mol Ecol Resour. 2010 May;10(3):538-41. doi: 10.1111/j.1755-0998.2009.02766.x. Epub 2009 Oct 16.

PMID:
21565053
30.

Enhancement of LTP in aged rats is dependent on endogenous BDNF.

Diógenes MJ, Costenla AR, Lopes LV, Jerónimo-Santos A, Sousa VC, Fontinha BM, Ribeiro JA, Sebastião AM.

Neuropsychopharmacology. 2011 Aug;36(9):1823-36. doi: 10.1038/npp.2011.64. Epub 2011 Apr 27.

31.

Regulation of hippocampal cannabinoid CB1 receptor actions by adenosine A1 receptors and chronic caffeine administration: implications for the effects of Δ9-tetrahydrocannabinol on spatial memory.

Sousa VC, Assaife-Lopes N, Ribeiro JA, Pratt JA, Brett RR, Sebastião AM.

Neuropsychopharmacology. 2011 Jan;36(2):472-87. doi: 10.1038/npp.2010.179. Epub 2010 Oct 6.

32.

The confounding effects of population structure, genetic diversity and the sampling scheme on the detection and quantification of population size changes.

Chikhi L, Sousa VC, Luisi P, Goossens B, Beaumont MA.

Genetics. 2010 Nov;186(3):983-95. doi: 10.1534/genetics.110.118661. Epub 2010 Aug 25.

33.

Activation of adenosine A2A receptors induces TrkB translocation and increases BDNF-mediated phospho-TrkB localization in lipid rafts: implications for neuromodulation.

Assaife-Lopes N, Sousa VC, Pereira DB, Ribeiro JA, Chao MV, Sebastião AM.

J Neurosci. 2010 Jun 23;30(25):8468-80. doi: 10.1523/JNEUROSCI.5695-09.2010. Retraction in: J Neurosci. 2013 Jan 16;33(3):1292.

34.

Approximate bayesian computation without summary statistics: the case of admixture.

Sousa VC, Fritz M, Beaumont MA, Chikhi L.

Genetics. 2009 Apr;181(4):1507-19. doi: 10.1534/genetics.108.098129. Epub 2009 Feb 2.

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